|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051471 ID=TCONS_00051471|Name=TCONS_00051471|organism=Clytia hemisphaerica|type=transcript|length=1062bp
TCAGGCTAATCGGACGGTAGTTTTCCgctatatttttgtttccttttttg
taAACAGGTGATACATTAGCATGCTTCCAGTCATTTGGGAGACAACTTTC
ATTGAGAGATTTTGTCATTATAAGGAAAAGCGGTTCTGCAATATATTCAG
CGAGCTCCTTTAGCATCCTCGGGTGAAGTTCATCTGGCCCCATGGATTTG
TTTGGATTTAACGCCTTGAGTTCCTTTTTTATAGTTTCAGTTAGTATATT
TATCTCTACTTCTTTATCCGTCCTGGAATGGAATTCAGGGAGTTGTTTGA
GTGGTTCACGTGTAAAGACACTACAGAATTGTCTCTGGAGTATGTTGGCT
TTACTTTTGTCATCATATTTGATCGAATTTTCATTATTAGGGTTTTCGAG
GAGAGGATGTATTCCCGTTCTTGCTTTGAGGTTGCTGCGTACATATTTCC
AGAatctttttggatttgtttttgattgttcgCTGATCTTTTTTTCAAAC
TCTCTCTTGGAGCGAGTCAGGGCTCTATCAGCGGCGTTGCGCCATCTTAC
GTACTCCCTTCTACGTCTCTCAGTGTCGTCGTTTTGAAGTGAGATGATCC
ATTTTCTATGCGCCTTACGTTTCTCTTTAATTatctgacaaatttttgga
TCTAAGGGATGCTTCCCTTTCCTCCTTTTATTTGACAGGTCGTTCTTATT
GTGGGTAAGTGGCACATAGAGGTTTCGGAGCTCGATCATTTGTTTTAGAA
ATAGTTCCAAACTCTCATTCACATTTAATTCAATTGACTTTTGGATGAAT
TCGATAGACCAATTGATATGGCTTAGATGAGATCTCATAAACTGGTAGTT
GGCTTTGCTGTATTGATATCTATCAAGCTCATTTTTAATTGTGAAATAGC
CATAAATTTAAAGGAGAGGACACTGTGATCACTGAGATGGAGTGGGGCAA
GGTATTTTATCtcggaaatttgattttcttccccTGTAAGGATGAGATTG
AGTATTGATGGTTTGTCGGTGCCTCGTCGCCGTGTCGGTTCAAGGACATG
TTGGTATAAAAA Run BLAST on NCBI protein sequence of TCONS_00051471-protein >TCONS_00051471-protein ID=TCONS_00051471-protein|Name=TCONS_00051471-protein|organism=Clytia hemisphaerica|type=polypeptide|length=279bp
MRSHLSHINWSIEFIQKSIELNVNESLELFLKQMIELRNLYVPLTHNKND
LSNKRRKGKHPLDPKICQIIKEKRKAHRKWIISLQNDDTERRRREYVRWR
NAADRALTRSKREFEKKISEQSKTNPKRFWKYVRSNLKARTGIHPLLENP
NNENSIKYDDKSKANILQRQFCSVFTREPLKQLPEFHSRTDKEVEINILT
ETIKKELKALNPNKSMGPDELHPRMLKELAEYIAEPLFLIMTKSLNESCL
PNDWKHANVSPVYKKGNKNIAENYRPISL Run BLAST on NCBI transcript from alignment at scaffold_201:621279..622340 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051471 ID=TCONS_00051471|Name=TCONS_00051471|organism=Clytia hemisphaerica|type=transcript|length=1062bp|location=Sequence derived from alignment at scaffold_201:621279..622340 (Clytia hemisphaerica)
TTTTTATACCAACATGTCCTTGAACCGACACGGCGACGAGGCACCGACAA
ACCATCAATACTCAATCTCATCCTTACAggggaagaaaatcaaatttccg
aGATAAAATACCTTGCCCCACTCCATCTCAGTGATCACAGTGTCCTCTCC
TTTAAATTTATGGCTATTTCACAATTAAAAATGAGCTTGATAGATATCAA
TACAGCAAAGCCAACTACCAGTTTATGAGATCTCATCTAAGCCATATCAA
TTGGTCTATCGAATTCATCCAAAAGTCAATTGAATTAAATGTGAATGAGA
GTTTGGAACTATTTCTAAAACAAATGATCGAGCTCCGAAACCTCTATGTG
CCACTTACCCACAATAAGAACGACCTGTCAAATAAAAGGAGGAAAGGGAA
GCATCCCTTAGAtccaaaaatttgtcagatAATTAAAGAGAAACGTAAGG
CGCATAGAAAATGGATCATCTCACTTCAAAACGACGACACTGAGAGACGT
AGAAGGGAGTACGTAAGATGGCGCAACGCCGCTGATAGAGCCCTGACTCG
CTCCAAGAGAGAGTTTGAAAAAAAGATCAGcgaacaatcaaaaacaaatc
caaaaagatTCTGGAAATATGTACGCAGCAACCTCAAAGCAAGAACGGGA
ATACATCCTCTCCTCGAAAACCCTAATAATGAAAATTCGATCAAATATGA
TGACAAAAGTAAAGCCAACATACTCCAGAGACAATTCTGTAGTGTCTTTA
CACGTGAACCACTCAAACAACTCCCTGAATTCCATTCCAGGACGGATAAA
GAAGTAGAGATAAATATACTAACTGAAACTATAAAAAAGGAACTCAAGGC
GTTAAATCCAAACAAATCCATGGGGCCAGATGAACTTCACCCGAGGATGC
TAAAGGAGCTCGCTGAATATATTGCAGAACCGCTTTTCCTTATAATGACA
AAATCTCTCAATGAAAGTTGTCTCCCAAATGACTGGAAGCATGCTAATGT
ATCACCTGTTtacaaaaaaggaaacaaaaatatagcGGAAAACTACCGTC
CGATTAGCCTGA Coding sequence (CDS) from alignment at scaffold_201:621279..622340 >TCONS_00051471 ID=TCONS_00051471|Name=TCONS_00051471|organism=Clytia hemisphaerica|type=CDS|length=837bp|location=Sequence derived from alignment at scaffold_201:621279..622340 (Clytia hemisphaerica)
ATGAGATCTCATCTAAGCCATATCAATTGGTCTATCGAATTCATCCAAAA
GTCAATTGAATTAAATGTGAATGAGAGTTTGGAACTATTTCTAAAACAAA
TGATCGAGCTCCGAAACCTCTATGTGCCACTTACCCACAATAAGAACGAC
CTGTCAAATAAAAGGAGGAAAGGGAAGCATCCCTTAGAtccaaaaatttg
tcagatAATTAAAGAGAAACGTAAGGCGCATAGAAAATGGATCATCTCAC
TTCAAAACGACGACACTGAGAGACGTAGAAGGGAGTACGTAAGATGGCGC
AACGCCGCTGATAGAGCCCTGACTCGCTCCAAGAGAGAGTTTGAAAAAAA
GATCAGcgaacaatcaaaaacaaatccaaaaagatTCTGGAAATATGTAC
GCAGCAACCTCAAAGCAAGAACGGGAATACATCCTCTCCTCGAAAACCCT
AATAATGAAAATTCGATCAAATATGATGACAAAAGTAAAGCCAACATACT
CCAGAGACAATTCTGTAGTGTCTTTACACGTGAACCACTCAAACAACTCC
CTGAATTCCATTCCAGGACGGATAAAGAAGTAGAGATAAATATACTAACT
GAAACTATAAAAAAGGAACTCAAGGCGTTAAATCCAAACAAATCCATGGG
GCCAGATGAACTTCACCCGAGGATGCTAAAGGAGCTCGCTGAATATATTG
CAGAACCGCTTTTCCTTATAATGACAAAATCTCTCAATGAAAGTTGTCTC
CCAAATGACTGGAAGCATGCTAATGTATCACCTGTTtacaaaaaaggaaa
caaaaatatagcGGAAAACTACCGTCCGATTAGCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051471-exon-scaffold_201-1491911889:621279..622340 | TCONS_00051471-exon-scaffold_201-1491911889:621279..622340 | Clytia hemisphaerica | exon |
| TCONS_00051471-exon-scaffold_201-1510915933:621279..622340 | TCONS_00051471-exon-scaffold_201-1510915933:621279..622340 | Clytia hemisphaerica | exon |
| TCONS_00051471-exon-scaffold_201-1575043694:621279..622340 | TCONS_00051471-exon-scaffold_201-1575043694:621279..622340 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_201 | supercontig | scaffold_201:621279..622340 . |
Blast
The following BLAST results are available for this feature:
|
