TCONS_00051465 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051465
Unique NameTCONS_00051465
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051465 ID=TCONS_00051465|Name=TCONS_00051465|organism=Clytia hemisphaerica|type=transcript|length=323bp
atcaaatgtcgttatttacgcgcgtcggataataacttaaaatataatac
tttgattttcttttagaTTACTTCAAAATGTACTCATTgattattatata
tattttttaacaatACAAAAATGCCAGGTGAAAACTGCTGTATAACTGGC
TGCCCAGTCTCAAGGAGATACaaaaaagtgagtcttttccaGATTCCTGC
CAAGTGCAAATACATTGACACTATGAAATGGAGACGTAACCTTATAAGGG
AACTTAAAAAGTATAGAGTTTTTGATGATGCTTTCAAAAATCGTCTAGCG
AGAAATAAAGTCCACATTTGTGA
Run BLAST on NCBI

transcript from alignment at scaffold_201:556178..556500

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051465 ID=TCONS_00051465|Name=TCONS_00051465|organism=Clytia hemisphaerica|type=transcript|length=323bp|location=Sequence derived from alignment at scaffold_201:556178..556500 (Clytia hemisphaerica)
TCACAAATGTGGACTTTATTTCTCGCTAGACGATTTTTGAAAGCATCATC
AAAAACTCTATACTTTTTAAGTTCCCTTATAAGGTTACGTCTCCATTTCA
TAGTGTCAATGTATTTGCACTTGGCAGGAATCtggaaaagactcactttt
ttGTATCTCCTTGAGACTGGGCAGCCAGTTATACAGCAGTTTTCACCTGG
CATTTTTGTattgttaaaaaatatatataataatcAATGAGTACATTTTG
AAGTAAtctaaaagaaaatcaaagtattatattttaagttattatccgac
gcgcgtaaataacgacatttgat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032619XLOC_032619Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051465-exon-scaffold_201-1491911889:556178..556500TCONS_00051465-exon-scaffold_201-1491911889:556178..556500Clytia hemisphaericaexon
TCONS_00051465-exon-scaffold_201-1510915933:556178..556500TCONS_00051465-exon-scaffold_201-1510915933:556178..556500Clytia hemisphaericaexon
TCONS_00051465-exon-scaffold_201-1575043694:556178..556500TCONS_00051465-exon-scaffold_201-1575043694:556178..556500Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_201supercontigscaffold_201:556178..556500 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.622366	0.303452	0.704674	0	1.67859	0.663222	0.800149	1.49818	1.04891	1.29925	0.94581	0.207246	0.827832	0.644784	0.883499	0.94813	0	0.239436	0	2.76922	0.601738	0.44026	0	0.324379	0	1.19272	0.426693	0	0.345389	0.703793
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051465 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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