|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051426 ID=TCONS_00051426|Name=TCONS_00051426|organism=Clytia hemisphaerica|type=transcript|length=527bp
CCGCAATCAAACAAATAGAGTTGATCAACAATATGATCAAAGAATTTGAT
TGTTTGGTGGATAGAAAAAAGGCTCTTAAAGAAGAGTTAGCCGaagctga
aaataaaaataaaatccttAAATTGAAACTTGGCATCAGTGAAAAGCAAC
CATCTCGCTACAAAGTCATCGTTCAACAAGATCTAGACGAAAAGATACCG
ACCACTGCCCAAGAAGCTAGCGacgaaatggccaaaatgaTGAACAATCT
CGCCCATAATATCAAGAGAGCAAATATCTtattaaaaagacaaaaagcgG
ATTTGAAAAAACTGAACGACAAAAATGTACTTCtcgaacaaaattttttt
gagaagatACTGAGAAACAACGCCGCTTCAAATCCTCAATTCCCAAATGG
GCATCATTTTCCATCCACGGAATTATGGGAATGAAAACctccaaaaaata
ttcaaatttgtaaatagttttttttaaatctatattaattttgtaaatag
ttttattttatctttacTTATGGTGGc Run BLAST on NCBI transcript from alignment at scaffold_201:572788..578867- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051426 ID=TCONS_00051426|Name=TCONS_00051426|organism=Clytia hemisphaerica|type=transcript|length=6080bp|location=Sequence derived from alignment at scaffold_201:572788..578867- (Clytia hemisphaerica)
CCGCAATCAAACAAATAGAGTTGATCAACAATATGATCAAAGAATTTGAT
TGTTTGGTGGATAGAAAAAAGGCTCTTAAAGAAGAGTTAGCCGAAGCTGA
AAATAAAAATAAAATCCTTAAATTGAAACTTGGCATCAGTGAAAAGGTGA
GAAAATGTCATTTTTTTCGCGATATCTCAGTCTGTTAAAATGAACGAGAG
CAAAAAAATACAAAAAGGTTTTTCCCAGATTCCCATATACTTTTAGTCCA
AGTGTCTTTTATAGTATGTTGTTACAGTAGCGTAGACAGGAGGGGCGCAA
AATTTGTGTAGGAGAGCAAACTTTCATGACACTGTGATTATCTATTCATA
ATGTAAAAAGATAATTAGAGTGTCATTAAAATCTGCTCTCCTACATAAAT
TTTGCGCCCCTCCTGTCTACGCTACTGTTTGTAAGCCCTCGTATTATTTC
AAAGCGATTTACGCTAGACATAATCGAATAATTTACGCCAGATTAAGTTT
CACATTTTCGAAAACGAAAATAAATTCACGCGAGATTTTCGAAATTGTGC
TTTCCGACGCAAAGCTTATAATTTATTTCTAACAATGTTCTAGCAACCAT
CTCGCTACAAAGTCATCGTTCAACAAGATCTAGACAAAAAGGTGAGTTTA
CTTTCTTAAATGTTAGCACTTTTCGCTTTTCAGGAGGAATTAAGTTTTTA
GTGTAATTTCCTGAGAAACTGCCGTATTTTTTTCCTACAGTAAAAACAAC
TGATAATTTATTTTCTCATAGATGCCGGCCACTGCCAAAGAAGCTAGCGA
CGAAATGGCCAAAATGATGAACAATCTCGCCCATAATATCAAGAGAGCAA
ATATCTTATTAAAAAGACAAAAAGCAGATTTGCAGAAAATCAACAGCGAA
AATGTTCTTCTCGGACACAAATTTTTTGAGAAGATACTAAGAAACAACGC
CGCTTCAAATCCTCAATTCCCAAATGGGCATCATTTTCCATCCACGGAAT
TATGGGAATGAAAACCTCCAAAAAATATTCAAATTTGTAAATAGTTTTTT
TTAAATCTATATTAATTTTGTAAATTGTTTTATTTTATCTTTACTTATTA
TGGTGTCACTTCAAAAAAATATAAATCCCCACAAAAACTCTTCAATACGC
TAAACAAAATAATTTTTTAATTTCATTCGTTCCGCATTTAAGCTGGTTGA
TGTTTAATTTAGAAAGAAATGACTCAGTATTAAAATTCTTAGAACCAAGA
AACTGTAATAGACCCGGTGGGACAAAGTCAAAGTTTCTTCCCCGGTGGAA
AGAAATACCCTAAAATTTCAGCCCAACCCAGAAACTGACTTTCATTTAAT
CCCAATTTTAAATTCAATGGAGAAAATTGTCTTCCAAATCCATCCAACTG
GATTTTTTTAGCTGGGAACAATATACAGTTTATATTTCCTTTTTGATAAA
AGTTTTCAACACCAATCTTGGAAAAAAGTTCCACCGGGCGGCCTGTGAGA
AAGGGGTGTCTTAGAGGTCGTAATTTCTCTGTTCATTGTCCTCTCCATCT
CGCCCTCCATAAGATACACCCCTGTGTTATAGACCCGCTGGAACCCCCAC
CCACTGGAAAATTTAGTCTCGGGTTGGAAAAAAACCTGTAATTTCAACCC
CACTGGGAAATCCACTTTTAGTTCATCCCTGCTCGAAATTCAATGTTGGA
ATCCAAAACCATCTGCACTGGATTTTTTAAACATTTGAACGATAAAATTT
CTATTCCCACTGAAGAAAAAAGTTCCACCGGGGCTGTGAGACAAGGGTGT
TAAGATAAATTTTTTCTCTCGAGGGTTTTAAGGCAGGCTCACACTTTCAC
AAAAATGCCATTTTTTCCTTCAAGGAACACATTAAGTTTACGTTGAATTT
GGATCCGACCTTGAGAATACTTTAAGAATATCAATTAAGATTGGAATTGC
CGATCTTATAAAAAAGCTAGCGAGGGATATTTGCGACTAAGATAAAGAGC
AAAAACATTTGAATATCAGAATGCCGAACGAGAAATGAAAGAAAGGCGTC
ACTTTTTTCAATATGTTAAAAATTGACGTCAGTTGAAAAATTTATTTGAC
GTCAAATAAAAAAATTCTTAATAGAAAGAAAACTGCCAAGAAAAATTATC
GTACTTCAACCCACCTTCGAGAATAGACGTTCGAAGGATTTTTCTCGCTT
TTTCGTGAGAAATAGTAGTATCGATTTGTTCATATCAATCTTTAACGATT
GATATTAATTGTTATAATAATGAGTGGTATAGCACACGAGTGTTTACAGC
ATGGTTTTGTTCTGGGACGGAGTCTAGGCGAGGGAGGATACGGGCAAGTC
AAACAAGCGTCGTACGTGAACTTTAACTGCCCCAATGATACTCTCGCCAA
GAGGCTCCGCTCCTTTGGACACAGTGACCAAGTAAGTTATTAATTGCTCA
ACTTTCATTGCTTTATATTCAATACGTTCGTTGCTTTTCTTTCTTTCCCT
AATATTTTTAGCTAGACTATAATAGACGCTAGATTCTACTGCCCAGACAA
TCATCAAGCCAAAAAGCTGAGATTATAGTATAAGTTTTGAATAGTAAAAC
AAAGATTGTTGATAACGTCTTTAAATAAACGGGTTATTGATTATTCGTTG
GTTTTGCAAGTGCAATGTGTTTCTTCTTAATAATTTCATAATTTTTTTTC
CCATTTAAAGGTTGCTATCAAAATAATGAAGAAAGCAAGCTGCTCTCAAA
CCTTCGAAAGGGAAGTGAGTTGCATGCTAAAACTGACTGGCTGTCGGAAC
GTTGTCCAGTTATTCAGATACTTCACCGGAGAAAACCATGTTTACTTGGT
GATCGAACTTTGTACTGGAGGTGACTTGATCACACATTTCACCAACAGCC
AGAAAATTAACGTAAAGAAAATTTTTCAACAGATTGCTGATGGCGTGCAG
CAAATGCACGTAAAGGGCATCGCCCACCGGTAAGTTTAAGAACCTATTGA
TGGTGATGTCTGCCTATTTGTCTTTCGATGTGGTGACACTCAAATCAAGT
CATATTTTTGCACTTGGTCATAGCACCCTTAGGTTTCAATACGATGACAC
GGAGCCGATTTGAACAGTTTTGGGGTTTTTCAAAATGTTCATGGAGCATT
GTTAAAAAGAAGAATTTTATACAAATTAAACCTATTCATTTCATGTTTTT
CAGAGACTTGAAACCAGAAAACGTCTTGATTGACCGAAATGGTATCGCTA
AGATCTCAGGTATGTTTTCCATTCATTTTAAAGCAATTCAGGATCGTCTC
TAAATGCCTTTGTACAATCCCCCCTGTAAATTAAATAAATATGAAATAGC
GTGTAACAGAGGCAGGCACCGATTCCTATGAAATAGGTCAATTGAACCAA
TTCCGTGTGTGATGATTAAAAACTTTTTAATCGTATTTTTTCAGACTTTG
GTACTACAATCATGCCATCATCTCCGGACAACCTTTGTAATTCCTATTGT
GGAACACCGGAATATATGGCACCAGAGGTCCTGCGTGGAGTTAAGCTCAT
CAGTTACAAACCGTACAATCCTTTCAAGGCCGATATGTGGAGTTTGTAAG
TCAATCTGTTTTAATACATTGTCAATTTTATTCGAAAAGCTAACAGTAGG
TCTCTCTGTGTCATTATGAATATGCCAACTTATTACGAGACTTGCCGCGG
TGAAATTTCATCATTTTTTAATTCCACCCTGAAAAGAAAAAAATTATAAA
GGAATGATCCAAAGTCAGAAAACGCGGGAAAGAGTTAGGGCGTCAGGGCT
GTTAACGGGAAGAATAGCGGTGGTAGAGTTTTGGAAGACTGTAAACATCT
CCGCCACTGCTTACTCCACCCGAATTTATCACGCCTCTCCTAAACTATTC
CCTTTTTTTAGTGATCTTGTGTAGACGATAGGATCGTCTACCCTAACATA
TTCATTTTTTCAAAAATTTAATGAATCTGCGGCCTTATCAGATATTTTCT
GAACCTGAAAAAAGAAGTCATNCATATTCATTTTTTCAAAAATTTAATGA
ATCTGCGGCCTTATCAGATATTTTCCGAACCTGAAAAAAGAAGTCATTTG
TAGCCTGAATGATGAGTCAAATTGGGGTCTATAGAATATATCTTAAATTG
GTTGTAGCAGGTCACTTTTTTTTAAAGATTTTTTCTCTGTAAAAAATTCA
TTTTTTTCTCTCAATTTTAGAGGTGCTATCCTGTATTCCTTTCTTACTGG
AGAGTTCCTTCCACAAGTTGGTTCTTGGAAAGAAAATTTGTCCGTCTCTA
ATGGTAAGTTTGAAGGTATCGTTCAAGTGGATGATTTCTACAATTCCTGG
AGAAATTTTGAGGCCCAGTACTGACGAACCCTGAACTAGGAGGAAGCTCT
GGCAGTATTAGCACTTTTCAACAAAATAAGAATTTTAGCAACTTTCTGTT
GTCGCTGACCCAAAAAAGGGTATTTTAGTGGCTCCTGCATGCCCTAACTC
ATTTGTACAGTAGTCGAAAAATTGTGACATTCTAAAGATTTTCCTGGGCC
ATTTTTTGCTTGCGATGAAAATGACCACTTGGATTGAACTTTATTCTTTA
TATTCATTGTTTAGAATGTCTTGATCTCTTGGCCAAGCTCTTGAGTATCA
AACCATCGTTGAGACCAACCATTGGTGACATTCAAAGACACCCCTGGCTT
TCGGCTTCTCATAAGGTGATTTTCTAAAGTGTGTCCGCAAAAAAGAATAA
GAATTTATTTTCATCAAAACATTTTGGAAATGACAAACTCTGCATTGCTG
ATCTTATAAAAAATTGTTCCAACCGGTTGATTTATTTATTTGTAAAAACA
CTTCATTCCACCCACGACTGGATAACAATTTTCGCCAAATACTCCTTTTT
TATCTGAATGATTTAACCATAACGTGAAATCATTAAATCATTAACATTGA
AACTTCTTTTCTAGGAACCCGCAATCAAACAAATAGAGTTGATCAACAAT
ATGATCAAAGAATTTGATTGTTTGGTGGATAGAAAAAAGGCTCTTAAAGA
AGAGTTAACCGAAGCTGAAAATAAAAATAAAATCCTTAAATTGAAACTTG
GCATCAGTGAAAAGGTGAGAAAATGTCATTTTTTTGGCGATATCTCAGTC
TGTTAAAATGAACGAGAATAAAAAAATACAAAAAGGTTTTTCCCAGATTC
CCATATATTTTTAGTCCAAGTGTCTTTTATAGTATGTTGTTACAGAAGCG
TAGGCAGAAGGGGCGCAAAATTTGTGTAGGAGAGCAAACTTTCATGACAC
TGTGATTATCTATTCATAATGTAAAAAGATAATCAGAGTGTCATAAAAAT
CTGCTCTCCCACATAAATTTTGCGCCCCTCCTGTCTACGCTACTGTTTGT
AAGCCCTCGTATTATTTCAAAGCGATTTGCGCTAGACATAATCGAATAAT
TTTCGCCAGATGAAGTTCACATTTTCGCCTGAGTAAACGAAAATAAATTC
ACGCGAGATTTTCGAAATTGTGCTTTCCGACGCAAAGCTTATAATTTAAT
TCTAACTATGTTCTAGCAACCATCTCGCTACAAAGTCATCGTTCAACAAG
ATCTAGACGAAAAGGTGAGTTTACTTTCTTAAATGTTAGCACTTTTCGCT
TTTCAGTAGGAATTGAAGTTTTTAGTGTAATTTCCTAAAAAATTACCGTA
CTTTTTTTTTCTACAGTAAAAACAACTGATAATTTATTTTCTCATAGATA
CCGACCACTGCCCAAGAAGCTAGCGACGAAATGGCCAAAATGATGAACAA
TCTCGCCCATAATATCAAGAGAGCAAATATCTTATTAAAAAGACAAAAAG
CGGATTTGAAAAAACTGAACGACAAAAATGTACTTCTCGAACAAAATTTT
TTTGAGAAGATACTGAGAAACAACGCCGCTTCAAATCCTCAATTCCCAAA
TGGGCATCATTTTCCATCCACGGAATTATGGGAATGAAAACCTCCAAAAA
ATATTCAAATTTGTAAATAGTTTTTTTTAAATCTATATTAATTTTGTAAA
TAGTTTTATTTTATCTTTACTTATGGTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051426-exon-scaffold_201-1575043694:578722..578867 | TCONS_00051426-exon-scaffold_201-1575043694:578722..578867 | Clytia hemisphaerica | exon |
| TCONS_00051426-exon-scaffold_201-1575043694:573254..573301 | TCONS_00051426-exon-scaffold_201-1575043694:573254..573301 | Clytia hemisphaerica | exon |
| TCONS_00051426-exon-scaffold_201-1575043694:572788..573120 | TCONS_00051426-exon-scaffold_201-1575043694:572788..573120 | Clytia hemisphaerica | exon |
| TCONS_00051426-exon-scaffold_201-1510915933:578722..578867 | TCONS_00051426-exon-scaffold_201-1510915933:578722..578867 | Clytia hemisphaerica | exon |
| TCONS_00051426-exon-scaffold_201-1510915933:573254..573301 | TCONS_00051426-exon-scaffold_201-1510915933:573254..573301 | Clytia hemisphaerica | exon |
| TCONS_00051426-exon-scaffold_201-1510915933:572788..573120 | TCONS_00051426-exon-scaffold_201-1510915933:572788..573120 | Clytia hemisphaerica | exon |
| TCONS_00051426-exon-scaffold_201-1491911889:578722..578867 | TCONS_00051426-exon-scaffold_201-1491911889:578722..578867 | Clytia hemisphaerica | exon |
| TCONS_00051426-exon-scaffold_201-1491911889:573254..573301 | TCONS_00051426-exon-scaffold_201-1491911889:573254..573301 | Clytia hemisphaerica | exon |
| TCONS_00051426-exon-scaffold_201-1491911889:572788..573120 | TCONS_00051426-exon-scaffold_201-1491911889:572788..573120 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_201 | supercontig | scaffold_201:572788..578867 - |
Blast
The following BLAST results are available for this feature:
|
