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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051400 ID=TCONS_00051400|Name=TCONS_00051400|organism=Clytia hemisphaerica|type=transcript|length=5876bpRun BLAST on NCBI protein sequence of TCONS_00051400-protein >TCONS_00051400-protein ID=TCONS_00051400-protein|Name=TCONS_00051400-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1918bp CLLNCFEKLNPEEPLKMKSECSNCNGLTKTFYRWRLYKRDNTTDNDLGSERun BLAST on NCBI transcript from alignment at scaffold_201:136561..173315- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051400 ID=TCONS_00051400|Name=TCONS_00051400|organism=Clytia hemisphaerica|type=transcript|length=36755bp|location=Sequence derived from alignment at scaffold_201:136561..173315- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_201:136561..173315- >TCONS_00051400 ID=TCONS_00051400|Name=TCONS_00051400|organism=Clytia hemisphaerica|type=CDS|length=149682bp|location=Sequence derived from alignment at scaffold_201:136561..173315- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00051400 vs. Swiss-Prot (Human)
Match: PKDRE (Polycystic kidney disease and receptor for egg jelly-related protein OS=Homo sapiens GN=PKDREJ PE=2 SV=2) HSP 1 Score: 332.413 bits (851), Expect = 1.472e-91 Identity = 276/1105 (24.98%), Postives = 486/1105 (43.98%), Query Frame = 2
Query: 2156 PNPIDFSTVFQGFTNLDENPLVFSVVLSIFGVYLMLMFWARREDRKDVAKAG-VTALVENDPFDRQFYEITVYTGFPANAGTTANVFIELSGDESQTEARQLRDNSRKLFQSRAENVFLASYPKHIGDLQYVRIWHDNTGKSPAWNLSRVVIHDLNADRKYLFINDDVIAVEAGDGSLERTIPIAGPDEVKSFNHLFYSTTQRNITDKHIWFSIFIRPAKSRFTRVQRLSCCLTLLYFTMLSSMMFFEVGGAE--ASAQTTYHLGPFAFAPSQIGIGVMTTLIIFPINILIVGVFRSIGPKPAPADMAK---------RKARSFW-----VWHEFK--ELFTCCVSKP--------PETLIDIMAQPDSGRESRLSTMTSGSAESTTTLRECVSLDTEIGFKLDTPXXXXXXXXXXXXXXXXXXXXPWWMKYFAWMLNILASFTAAFFVVLYGFQFGKEKSSQWFSTFFLSFIQDVFIAQPMKVLGLALFIALILXXXXXXXXXXXXXXXXMGYENRIQNDEEFLSNTS-SLRRKPSENKEPKKNDIIRFQPPSKEKVQALRD--YRLKEIKMWNVLRE---------------LILYLMYVVVLCQVSYSHLDPKSFQLRQSSF--DTFVKASYGGVNFEKTNKLSDVWQWLETTVVEGLFKESVYTGQQAIPGYTQDYYSNVFGGARIRQIRIQPDS--CTVHEMFDQLIPR----CHDEYSWAEEDVSNYDPGWEKVKNHTHFPLHYKSWEYQTSTELDTYPFVGRMAAYAGGGYTADLVFDQKFSLETLNI--LKKDNWIDERTRALFVEITTYNAQVNLFTVMNLLVEVLPTGGLQHFSSIRIARLYTFG--GSTESFTLACQFFVILFMIVFIYKESKKIYRQKRAYFSGFWNLLEFVLIVLTLTSLAIFFRRMFMVDSAVKGIQDNPGKFVSFNKVVQWDTMFSVLSSIVVFMSCLKGLRLLQYNKTISILSSTLQGCARPLGAFSIIFLVFFMAFTIFAYIMFMPHLEKFSSFVTSMESVMGLLLGDFDFSKIESTKPILGRFWFCLLMLFGSMYMMNVFLAIIMDTYCVVTEDIALQ-NNEHEIVDFMVNKFLVVF 5296
PNP+D +L +NP+ VL I +Y+ L FWA D D G V L +NDP+D Y +T++TG +GT ANVF++L G S ++ L + N FL + +GD+ +R+WH+N G+SP+W LSR+ + +L + +LFI ++V D +L+RT + PDE + F+ N+ H+WFSIF F R+QRLSCCL +L ++L ++MFF + E S + Y + IG+ + LI P+ +LI +F KP AD+ + +A W WH ++ ++ V+KP P+ ++P R + T + T + D ++ + Q ++ + K+K + LPWW Y AW L S ++FF+V YG +G +KS +W F SF Q V + QP K++ L+ F N ++ N S S + K +E + D +R P E++Q + D R++ +M+ L E +L+L Y++ L F + F++ + ++ KL D+++WL + ++ L + P + + S + G +RQ+R + C E F Q R CH +Y ED NY W +V + Y+ Y G + Y GGY +Q+ TL + L++ NW+DE+T A+ +E+TT+N +NLF ++++ EV G + S+ L F S E + +++F + ++ E I +++ +Y +NLL F L + + +F R+ F+ ++ NP F+ F+ V Q D + ++ ++F++ LK LR ++ + + +Q + + + V+F + F Y++F H +S+ + S ++V + F ++ + + ILG + ML ++N+F A+I+ Y + + + + ++E E + ++ K +F
Sbjct: 1167 PNPVDLR--LNIIKSLHQNPVTLFTVLFIILLYVGLAFWALYRDEMDQHLRGHVIVLPDNDPYDNLCYLVTIFTGSRWGSGTRANVFVQLRGTVSTSDVHCLSHPHFTTLYRGSINTFLLTTKSDLGDIHSIRVWHNNEGRSPSWYLSRIKVENLFSRHIWLFICQKWLSV---DTTLDRTFHVTHPDERLTRKDFFFIDVSSNLRKNHMWFSIFASVVAKTFNRLQRLSCCLAMLLSSLLCNIMFFNLNRQEQTESRERKYM--------RSMMIGIESVLITIPVQLLITFLFTCSQRKPQ-ADLKEVSPQKHPLMSEASEHWEEYLRKWHAYETAKVHPREVAKPASKGKPRLPKASPKATSKPKH-RHRKAQIKTPETLGPNTNSNNNIEDDQDVHSE-----QHPSQKDLQQLKKKPRIVLPWWCVYVAWFLVFATSSISSFFIVFYGLTYGYDKSIEWLFASFCSFCQSVLLVQPSKIILLSGFRT---------------------------NKPKYCKNLSWSTKYKYTEIRL----DGMRMHP---EEMQRIHDQIVRIRGTRMYQPLTEDEIRIFKRKKRIKRRALLFLSYILTHFIFLALLLILIVLLRHTDCFYYNQFIRDRF-SMDLATVTKLEDIYRWLNSVLLPLLHND-------LNPTFLPESSSKILGLPLMRQVRAKSSEKMCLPAEKFVQNSIRREIHCHPKYGIDPEDTKNYSGFWNEVDKQA-IDESTNGFTYKPQGTQWLYYSYGLLHTYGSGGYALYFFPEQQRFNSTLRLKELQESNWLDEKTWAVVLELTTFNPDINLFCSISVIFEVSQLGVVNTSISLHSFSLADFDRKASAEIYLYVA---ILIFFLAYVVDEGCIIMQERASYVRSVYNLLNFALKCIFTVLIVLFLRKHFLATGIIRFYLSNPEDFIPFHAVSQVDHIMRIILGFLLFLTILKTLRYSRFFYDVRLAQRAIQAALPGICHMAFVVSVYFFVYMAFGYLVFGQHEWNYSNLIHSTQTVFSYCVSAFQNTEFSNNR-ILGVLFLSSFMLVMICVLINLFQAVILSAYEEMKQPVYEEPSDEVEAMTYLCRKLRTMF 2204 The following BLAST results are available for this feature:
BLAST of TCONS_00051400 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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