TCONS_00051397 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051397
Unique NameTCONS_00051397
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length546

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051397 ID=TCONS_00051397|Name=TCONS_00051397|organism=Clytia hemisphaerica|type=transcript|length=546bp
TAAATAGCTATAGAGAAGCACTCATCTCTAGACCAATACTTCTGTGGAAG
TGATGACTACCTTCTTTTGTATCCTGACGAAAAAATTGTTGACAAAATAC
CATCATCTGAAGAAACTTTTACTCTCAAAAAGtataaagaatttttcaag
GAACCGTCGTATGAAAGGGTAAAACTATACTTATGCCTTGAGGTAGACTT
CATGAGTGATAACGTATCTTGAAAAACAAGAAGACAAGAAAATAGATGAT
TATTTTAATTCCAACGCTGCAGGCAAGGCTTCAGATTCAGATGATGAGAA
TATTGAGAATATCACGATTGTTCCCAAAAGAATTGAAGTTAAAGATGATG
TGGTTGTCATAAATGCTGATGCAGAGGCGAAAACAAAcctcactgaaaaa
aattatccatGTCCTACTTGTAGAACANGCTGATGCATAGGCGAAAACAG
AcctcactgaaaaaaattatccatGTCCTACTTGTAGAACACTATTTTCA
TTAATGGATATAGAAACACATGCTGATGAGTGTGCCAATAATGCCC
Run BLAST on NCBI

transcript from alignment at scaffold_201:30168..30713-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051397 ID=TCONS_00051397|Name=TCONS_00051397|organism=Clytia hemisphaerica|type=transcript|length=546bp|location=Sequence derived from alignment at scaffold_201:30168..30713- (Clytia hemisphaerica)
TAAATAGCTATAGAGAAGCACTCATCTCTAGACCAATACTTCTGTGGAAG
TGATGACTACCTTCTTTTGTATCCTGACGAAAAAATTGTTGACAAAATAC
CATCATCTGAAGAAACTTTTACTCTCAAAAAGTATAAAGAATTTTTCAAG
GAACCGTCGTATGAAAGGGTAAAACTATACTTATGCCTTGAGGTAGACTT
CATGAGTGATAACGTATCTTGAAAAACAAGAAGACAAGAAAATAGATGAT
TATTTTAATTCCAACGCTGCAGGCAAGGCTTCAGATTCAGATGATGAGAA
TATTGAGAATATCACGATTGTTCCCAAAAGAATTGAAGTTAAAGATGATG
TGGTTGTCATAAATGCTGATGCAGAGGCGAAAACAAACCTCACTGAAAAA
AATTATCCATGTCCTACTTGTAGAACANGCTGATGCATAGGCGAAAACAG
ACCTCACTGAAAAAAATTATCCATGTCCTACTTGTAGAACACTATTTTCA
TTAATGGATATAGAAACACATGCTGATGAGTGTGCCAATAATGCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032570XLOC_032570Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051397-exon-scaffold_201-1575043694:30168..30713TCONS_00051397-exon-scaffold_201-1575043694:30168..30713Clytia hemisphaericaexon
TCONS_00051397-exon-scaffold_201-1510915933:30168..30713TCONS_00051397-exon-scaffold_201-1510915933:30168..30713Clytia hemisphaericaexon
TCONS_00051397-exon-scaffold_201-1491911889:30168..30713TCONS_00051397-exon-scaffold_201-1491911889:30168..30713Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_201supercontigscaffold_201:30168..30713 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.355262	0.265996	0	0	0.903667	0.148159	1.30007	0.288166	0.385905	1.48627	0	0	0	0	0	0	0	0	0	0	0.17653	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051397 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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