TCONS_00051396 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051396
Unique NameTCONS_00051396
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051396 ID=TCONS_00051396|Name=TCONS_00051396|organism=Clytia hemisphaerica|type=transcript|length=547bp
AGTGTGATGAATCCTGTGAAAGTGCTTCCAGTAGCACAACTCTCAATCTC
AAACAATTCCAAGCAGCCAAAACTAAACAACGCACAGAACTGATTtcaaa
aaagaacaataacaAACAATCTAAACAATCTACTTCAACAAAATCAATAA
AGGAGACAACTGATAAAGTGACCATTAAAGTTGGGCTAATGATCAGAGAC
AAAGGTGTCCTCAAAAAACAAAGAGGGAATTGGGCCAATTTATCcGCAAG
GCTTCAGATTCAGATGATGAGAATATTGAGAATATCACGATTGTTCCCAA
AAGAATTGAAGTTAAAGATGATGTGGTTGTCATAAATGCTGATGCAGAGG
CGAAAACAAAcctcactgaaaaaaattatccatGTCCTACTTGTAGAACA
NGCTGATGCATAGGCGAAAACAGAcctcactgaaaaaaattatccatGTC
CTACTTGTAGAACACTATTTTCATTAATGGATATAGAAACACATGCTGAT
GAGTGTGCCAATAATGCCCCACACATGCCCATAATAATTGATGATGA
Run BLAST on NCBI

protein sequence of TCONS_00051396-protein

>TCONS_00051396-protein ID=TCONS_00051396-protein|Name=TCONS_00051396-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
CDESCESASSSTTLNLKQFQAAKTKQRTELISKKNNNKQSKQSTSTKSIK
ETTDKVTIKVGLMIRDKGVLKKQRGNWANLSARLQIQMMRILRISRLFPK
ELKLKMMWLS
Run BLAST on NCBI

transcript from alignment at scaffold_201:30140..34527-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051396 ID=TCONS_00051396|Name=TCONS_00051396|organism=Clytia hemisphaerica|type=transcript|length=4388bp|location=Sequence derived from alignment at scaffold_201:30140..34527- (Clytia hemisphaerica)
AGTGTGATGAATCCTGTGAAAGTGCTTCCAGTAGCACAACTCTCAATCTC
AAACAATTCCAAGCAGCCAAAACTAAACAACGCACAGAACTGATTTCAAA
AAAGAACAATAACAAACAATCTAAACAATCTACTTCAACAAAATCAATAA
AGGAGACAACTGATAAAGTGACCATTAAAGTTGGGCTAATGATCAGAGAC
AAAGGTGTCCTCAAAAAACAAAGAGGGAATTGGGCCAATTTATCCGCTCG
GGTAAGTTATGGCATGTCTTAAAATTACCATAATTTTTAGATCGCATTAG
CCGGCAGAAAACGACCAAACAAATGACTGAACATAAAGGGTACTATGATG
TAGTTTCTAACCTGATGTTTTTCGCTGATTTTCGTGAAAAACCGTAAAAA
CTGATTATAACGTCATAATCGATGACGTCATAAAAACTAAAAATTGAATT
TCTCAAGGGTTTTTTATCCAATCGTCTTCAAACTTTAACCAAAGATGTAT
CTGACTAAAGTCGATCATTTGAAAAAAAATTTTTTTCGAAATTCTGATTA
CGTCAGCAAAAAATAGGATTTTTCCTTTTTTCCTAATTTCTGCTGACGTC
ATTAAAAATTTTGAAAAATTTCTTTTTCCAAATGATCGACTTTAATGAGA
TACATCTTTGGTGAAAGTTTGAAGACAATTGGATAAAAAAAATAAAAATC
CTTGAGAAATTCAATTTTTAGTTTTTATGACGTCATCGATTATGACGTTA
TAATCAGTTTTTACGGTTTTTCACGAAAATCAGCGAAAAAACAATTAGGT
TACACATCAGGTTAGAAACTACATCATAGTACCCTTCATGTTCAGTCATT
TGTTTGGTCATTTTCTGTCGACTAATGCGATCTAAAAATTATGGTAATTT
TCAGTTTTTTAGACATGCCATAACTTACCCGAGCGGTTTTATCCGTAAGT
TATGGAAGCCGAGAAAGGTCATCTGGCGATTTCTTTCAAAATATGTCGAG
ATTTCTTTCAAACTGTCGAGAATTCTTTCAAACTGTCGAGAATTCTTTCA
AACTGTCGAGAATTCTTTCAAACTATCGAGAATTCTTTCAAACTATCGAG
ATTTCTTTCAAACTGTCGAGAATTCTTTCAAACTGTCGAGATCTCCTTTG
AACTGTCGAGCTTCCAATAAGTGTCCCGTTCCCAAAAGAATCGCGATTTC
ATTTTTTTCCAGAAAAAAATGTAGAGATTCCTTCATCAAAACCGCGGGAA
CATAAACTAAACGCAGGACATGGGTATCACCTCCACACGCGAAAAAGAAA
AATAGGGAGCACCAATCCAGTCGGAGTTAACTGTAAACTACTCCGAAGAT
AATGGCTTTATTATCGGACCTGACTGCTGATCAAAAATTTCCAAATCATA
TCGTTTTTGGTTGGAAAGATATCTAAGTTTGTAGATTTAAAAATATTTAA
CCTTTTCTTCTTTACAACTTGGGGTCCCTTTTTAAAAATACTGACGTCAT
CAAATTTAGAAGGACTGTCGAAAAATTTTGGAAAATGAAATTAAGTAAAA
GTTTTCAAAGTAGTAGCATAAATTGGAAAACTTCCAGAAAAAAAATGTTT
TAGGGGTGATGCATCGTTAAAGAAAAGCTTGGCACGTGGACTTTTCACAA
GTGGATAATAATAGGGTGATTCCCCCAGCGTAATGCTCGACGCTTTTTTG
GAAGCTCGACAGTTTGAAAGAATTCTCGACAGTTTGAAAAAAATCTGGAC
ACTTTTTGGAAGCTCGACAGTTTGAAAGAAATCTCGACAGTTTGAAAGAA
ATCTCGACAGTTTGAAAGAATTCTCGACAGTTTAAAAGAATTCTTGACAG
TTTGAAAGAATTCTCGACAGTTTGAAAGAAATCTCGACAACTTGAAAGAA
ATCTCGACATATTTTGAAAGAATTCGCCAGATGACCTTTCTCGGCTTCCA
TAGTAAGTCGTTCAGATTCAGCTGATATTGTTTTCAAACTAGCTCTATTT
CTAGTTCTATTAAGTGATCACATAATACGCTAACGTACATTATCATGATA
TTGAAAATAAAAAGTTATTAAAAATACCTAATAAAATGAAAACAACTANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTATTCATCCAAAAAAAATCTTATA
AAAGTCGCTAAAGCATTTTTTTACCCAGGGTCGGCTTTTTATTGTATTTT
GGTCGAGGGTCGGCTTTTTTCCAAGGTCGAGGTCAGCCTTTTTCAAGGGT
CAGGGTCGAGGTCGAGGTCGGGTTAATGGAGATTGCCGGTTAGGGCATTG
GTTTCGAAACCTATAGGTTCCCGGTTCGAGACCCCCTTTGGTCACTATTC
AACTTGAAAAAAATTCTAAGTCCAGCCGGATGCATCTGAAGCTTTTAGCC
AAATGTGAAAGAGATGAAGTGTAAGCAGTGTCAGTCAATGGTGCCTGACA
AGCGCTTTTGTGGTTCTTGTGGACATGGATTGTTGAAGTATTGTATGGAT
TGTGGGAATAAAGGAAAGTGTGATGAATCCTGTGAAAGTGCTTCCAGTAG
CACAACTCTCAATCTCAAACAATTCCAAGCAGCCAAAACTAAACCACGCA
CAGAACTGATTTCAAAAAAGAACAATAACAAACAATCCAAACAATCTACT
TCAACAAAATCAATAAAGGAGACAACTGATAAAGTGACCATTAAAGTTGG
GCTAATGATCAGAGACAAAGGTGTCCTCAAAAAACAAAGAGGGAATTGGG
CCAATTTATCCGGTTTTATCCGTAAGTCGTTCAGATTCAGCTGATATTGT
TTTCAAACTAGCTCTATTTCTAGTTCTATTAAGTGATCACATAATACGCT
AACGTACATTATCATGATATAAAAAGTTATTAAAAATACCTAATAAAATG
AAAACAACTAAAGCTAAAAGTGGCTGCAAGAAGAAGTAGTGAGATAGCGA
AGTAGCGAGATATGACTGAAGCTGAAAGACACCACCACAAGGGTTTAGAA
TAGTATGTAGTAAGCGAGAGGCTAAGATGTTATAATGTAGACCTGAAAGA
CTTGTGATTTGATGAAGTTAATAAGATATAAAATATACATTTAAATTTTT
ATATAATATATAAATATGATTACTTAAAATTAAATATTATGATTAGTATA
TGTTTAATATAAGCTAAAAAGAAAGTAGAAACATTAATAGTGAATAAATA
CTATAGCTAATAAATAAATAGCTATAGAGAAGCACTCATCTCTAGACCAA
TACTTCTGTGGAAGTGATGACTACCTTCTTTTGTATCCTGACGAAAAAAT
TGTTGACAAAATACCATCATCTGAAGAAACTTTTACTCTCAAAAAGTATA
AAGAATTTTTCAAGGAACCGTCGTATGAAAGGGTAAAACTATACTTATGC
CTTGAGGTAGACTTCATGAGTGATAACGTATCTTGAAAAACAAGAAGACA
AGAAAATAGATGATTATTTTAATTCCAACGCTGCAGGCAAGGCTTCAGAT
TCAGATGATGAGAATATTGAGAATATCACGATTGTTCCCAAAAGAATTGA
AGTTAAAGATGATGTGGTTGTCATAAATGCTGATGCAGAGGCGAAAACAA
ACCTCACTGAAAAAAATTATCCATGTCCTACTTGTAGAACANGCTGATGC
ATAGGCGAAAACAGACCTCACTGAAAAAAATTATCCATGTCCTACTTGTA
GAACACTATTTTCATTAATGGATATAGAAACACATGCTGATGAGTGTGCC
AATAATGCCCCACACATGCCCATAATAATTGATGATGA

Coding sequence (CDS) from alignment at scaffold_201:30140..34527-

>TCONS_00051396 ID=TCONS_00051396|Name=TCONS_00051396|organism=Clytia hemisphaerica|type=CDS|length=666bp|location=Sequence derived from alignment at scaffold_201:30140..34527- (Clytia hemisphaerica)
GCAAGGCTTCAGATTCAGATGATGAGAATATTGAGAATATCACGATTGTT
CCCAAAAGAATTGAAGTTAAAGATGATGTGGTTGTCATAATGTGATGAAT
CCTGTGAAAGTGCTTCCAGTAGCACAACTCTCAATCTCAAACAATTCCAA
GCAGCCAAAACTAAACAACGCACAGAACTGATTTCAAAAAAGAACAATAA
CAAACAATCTAAACAATCTACTTCAACAAAATCAATAAAGGAGACAACTG
ATAAAGTGACCATTAAAGTTGGGCTAATGATCAGAGACAAAGGTGTCCTC
AAAAAACAAAGAGGGAATTGGGCCAATTTATCCGCAAGGCTTCAGATTCA
GATGATGAGAATATTGAGAATATCACGATTGTTCCCAAAAGAATTGAAGT
TAAAGATGATGTGGTTGTCATAATGTGATGAATCCTGTGAAAGTGCTTCC
AGTAGCACAACTCTCAATCTCAAACAATTCCAAGCAGCCAAAACTAAACA
ACGCACAGAACTGATTTCAAAAAAGAACAATAACAAACAATCTAAACAAT
CTACTTCAACAAAATCAATAAAGGAGACAACTGATAAAGTGACCATTAAA
GTTGGGCTAATGATCAGAGACAAAGGTGTCCTCAAAAAACAAAGAGGGAA
TTGGGCCAATTTATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032570XLOC_032570Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051396-proteinTCONS_00051396-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051396-exon-scaffold_201-1575043694:34283..34527TCONS_00051396-exon-scaffold_201-1575043694:34283..34527Clytia hemisphaericaexon
TCONS_00051396-exon-scaffold_201-1575043694:30140..30441TCONS_00051396-exon-scaffold_201-1575043694:30140..30441Clytia hemisphaericaexon
TCONS_00051396-exon-scaffold_201-1510915933:34283..34527TCONS_00051396-exon-scaffold_201-1510915933:34283..34527Clytia hemisphaericaexon
TCONS_00051396-exon-scaffold_201-1510915933:30140..30441TCONS_00051396-exon-scaffold_201-1510915933:30140..30441Clytia hemisphaericaexon
TCONS_00051396-exon-scaffold_201-1491911889:34283..34527TCONS_00051396-exon-scaffold_201-1491911889:34283..34527Clytia hemisphaericaexon
TCONS_00051396-exon-scaffold_201-1491911889:30140..30441TCONS_00051396-exon-scaffold_201-1491911889:30140..30441Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_201supercontigscaffold_201:30140..34527 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.56338	2.43747	2.03502	0.503762	4.92684	2.70906	3.24601	4.42307	2.76763	2.5493	0	0	0	0	0	0	0	0	0	0	0.312771	2.18056	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051396 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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