TCONS_00051388 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051388
Unique NameTCONS_00051388
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2543

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051388 ID=TCONS_00051388|Name=TCONS_00051388|organism=Clytia hemisphaerica|type=transcript|length=2543bp
ggccaaaacttttaaaaacgttAATCTATTTTCAAGCAATATCATTGATA
CTATTCGatactatactatactatactCTCCAGTTTAAATGGAAGACTTA
AAAAAAGGTATGGCGGATTTCCTTAGTTGACTCTAAATAACTTTGGACCA
AAATTCAGCCGAAAGGCAAACTTGTGCCTGAGAGTAAGGATTGCAATGGA
AGAAAAACTTAAGAGATACATTCAATCCTATGTTGACGAATGCAAACCTT
CGCAAAATGAGATCAGTCAAGGCAAAAAAGTGATGAACAATATTTTCAGA
CTTCTTCAAGCTTCAAGAAAATATTCCATTGACCGAGAAAGATTGGCAGG
GAGTACAGCTAAAAAGACAGCCATTTCTGGTCACATAGATTTTGATTGTG
TTGTGTTTGTGAATCCTCAAGACAAACAAGGCTTCAATGTTAAAATTCCT
GAAGTTCTGGATAATTTTGAAGAGATTCTGATATctaatgaaaaatttga
tctggaagaaaaagatttcaggaaaaCACCAAGACGGAATCCAAGCACAT
TACAGGTCACAATTGATGATATTGGTTTTGATATCTGCGTTGGTTTGAAC
CAAACATACCACAGTAACCATAGAGATAAAAAAGGGCAGAGCGTTGCATT
TGTTGAAAGAAGTATTGAGTTTACCAAACAAAAGAGTGCATTTGCCCATG
AAGTTGCTCGCTTGGCAAAATTTTGGAACAAGACAATTGTCTTAGAGTTG
CTGACACCTAATTCCTATGTTTCTGGAAGATCCACAATCATGGAGTTGAT
TGCTTTTGCAGCAGCAGCTGAAGCggctgaagaagaaaaacatgCAAGAC
ATAGGTTGTCCCATCTGAATGCCTTCAGAAAATTCCTTGTAATGTTGAGA
GATATTGAGGAGCTCAAGATATCACACAGAAATTTCTGGAGTAGCAACGG
AATTCCTAATGTTTGTAANAGATATCACACAGAAATTTCTGGAGTAGCAA
CGGAATTCCTAATGTTTGTAACCATATGGCCCCCTATCTTATTGACCCAT
CTGACCCAGAAAATGATTTGCTGGAGACAATTAAGCctgaaataagaaca
attttctcTCAATGTGCAAGCACAACACTAGAGCGTTTGGGATTGTATGA
AATGGGAGGGATCAATGACATTTTTGAAATGTATCCATCATGGCATGGAA
ACAAATTTGCTCGATGGGAACCAAAAAATTGGCTGGTAGGGACAGTAACA
ACAAACAGTGCATTTGTGGATTTGAAATACAACAAAGGAATGGTTAACAA
CAACCAACATAATGGTCGTGTAAAGTggcttgaaaaatatttgatccCTC
TTGTGAAGCGAGCGGTGATTGAGAGCGTACacaaagaaaaggaaaagaTT
AACTCTACCGTTTCCAGCACAAGTACAAGCCTAAAtaaaaaagttgtcaa
agaaaaagttgaaagttCAATCGATGAAGAGATTTTGAAAACAGATACCA
AATGGAGTCCGTCAAGTGAAGGAGATGAAAGTCGAATGGTGACCATCACC
ATTCCATACAATGATGCAGGAAAAAATGCAATAAGAATCAGCTTTGACTG
AACCCTTTATAGAATGCTTTGGGCAATAAAACATACTGGAACAGAAACAT
TTGATTAGATTGGGAACAAACTCGTATTTAAGGAAATGATaaacataaat
aaataaaaacaaatgaaaaagcaCTGAGatttgcacaaacaattttgaaa
aaatgaaaagaaaaatattctgGTTTgtaaactaaaaatttagaaattca
aaaaacttcatttatttttatgttaattGTATTATGTCATAATTATCATA
ATTACATATAGGAATTAGCTTGCTTTGCATGACATTATGATTAGAATGAT
TATGATAAATTGTATGGTTGTAGTATAGTATTGcacaaatatcttaaaat
ttagTAGATAACCCAATTTGTTGTTTGATTCCATGCTTTGACCACTCTCT
AAATGAATAGCCAATGTTGTGTATTGAGCACAGCAATGTAATAGCAAATT
CATTTTACTCTAATTATTTTGCACAGATATGTTATTGATCTCCTCTGCAG
ATATGTAAAATCTACTCTAATCAGTGGTTGATCAAGATACATTTCTtgaa
atttacatttttcaaaaagaacatGCAACAAGTggtacttttatggacct
acatggttatcaaaactaatcaatgaacattgaaacaatctgaaacaatg
aaacacataagacataacgggacaaaatacaaaaaaatataatgaaagca
tatctattgggagaaactattaacactattgaaaaagacttttgaaaaat
aaataaacaagtgatacttttatggacctacctggttatgcatttaacac
ataccaggtgcaccaaaaaaagatTACAGGTTTgttgagatattgtgagc
ttcaggattcaaattttttgttcattcttttttaatcgtatATAGGATGC
TCTAACTTGAATTTTGAGCTATCATACATTAGGTTTGAAAAGG
Run BLAST on NCBI

transcript from alignment at scaffold_201:456506..460645+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051388 ID=TCONS_00051388|Name=TCONS_00051388|organism=Clytia hemisphaerica|type=transcript|length=4140bp|location=Sequence derived from alignment at scaffold_201:456506..460645+ (Clytia hemisphaerica)
ggccaaaacttttaaaaacgttAATCTATTTTCAAGCAATATCATTGATA
CTATTCGatactatactatactatactCTCCAGTTTAAATGGAAGACTTA
AAAAAAGGTATGGCGGATTTCCTTAGTTGACTCTAAATAACTTTGGACCA
AAATTCAGCCGAAAGGCAAACTTGTGCCTGAGAGTAAGGTAAGAAAACTG
ACTATACCTGTCTTGACTTCTATATAATTATATATAGTTTGTGGAGAGCC
TCATAAAAACATTGACCTTTAGGGTTTGCCTTAGgagaaacaagcaacat
gctgaatggacctacctaatgattaacatcagatgaaaataagaaaaaag
tgacaataattgtacaaaaattcagaatggaaaaataaNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNcacgttctgggcattgccattttgcatcattgtgcaa
aaaatcagaaaaaactaatgagccaatcctgagaaaagctggtaacagac
ggacggacggatgaacgaacgaacggacatgggttaatttatagaacctc
cagcCCGGCCCGGAGGTAGGTctgggtaggtccaaaaaatgctGTGACAA
CAAAAGTGAAGCAGTGTGCTATTTCAAAAAACCTGAGCAAAAGGTGTGCT
CAAAATAAAGGTTACGCTACATAATGATTCCTTGGGACTCCCCAAAATAC
ATCAGATAAAAATGGCCACTATAGTCACAACATTTTTTTACTGATATAAA
GGTGCCCTGATGTCACCAGaataatataaaaagaaatgaaattttgaaaa
cttgaatGATCTTATtaaaatgatgaatttcttgcaTTGCTCTAGACTTT
GTGAGTTAGGTAAAAAGTTCTATTCTTTTTTTCAGGATTGCAATGGAAGA
AAAACTTAAGAGATACATTCAATCCTATGTTGACGAATGCAAACCTTCGC
AAAATGAGATCAGTCAAGGCAAAAAAGTGATGAACAATATTTTCAGACTT
CTTCAAGCTTCAAGAAAATATTCCATTGACCGAGAAAGATTGGCAGGGAG
TACAGCTAAAAAGACAGCCATTTCTGGTCACATAGATTTTGATTGTGTTG
TGTTTGTGAATCCTCAAGACAAACAAGGCTTCAATGTTAAAATTCCTGAA
GTTCTGGATAATTTTGAAGAGATTCTGATATctaatgaaaaatttgatct
ggaagaaaaagatttcaggaaaaCACCAAGACGGAATCCAAGCACATTAC
AGGTCACAATTGATGATATTGGTTTTGATATCTGCGTTGGTTTGAACCAA
ACATACCACAGTAACCATAGAGATAAAAAAGGGCAGAGCGTTGCATTTGT
TGAAAGAAGTATTGAGTTTACCAAACAAAAGAGTGCATTTGCCCATGAAG
TTGCTCGCTTGGCAAAATTTTGGAACAAGACAATTGTCTTAGAGTTGCTG
ACACCTAATTCCTATGTTTCTGGAAGATCCACAATCATGGAGTTGATTGC
TTTTGCAGCAGCAGCTGAAGCggctgaagaagaaaaacatgCAAGACATA
GGTTGTCCCATCTGAATGCCTTCAGAAAATTCCTTGTAATGTTGAGAGAT
ATTGAGGAGCTCAAGATATCACACAGAAATTTCTGGAGTAGCAACGGAAT
TCCTAATGTTTGTAANAGATATCACACAGAAATTTCTGGAGTAGCAACGG
AATTCCTAATGTTTGTAACCATATGGCCCCCTATCTTATTGACCCATCTG
ACCCAGAAAATGATTTGCTGGAGACAATTAAGCctgaaataagaacaatt
ttctcTCAATGTGCAAGCACAACACTAGAGCGTTTGGGATTGTATGAAAT
GGGAGGGATCAATGACATTTTTGAAATGTATCCATCATGGCATGGAAACA
AATTTGCTCGATGGGAACCAAAAAATTGGCTGGTAGGGACAGTAACAACA
AACAGTGCATTTGTGGATTTGAAATACAACAAAGGAATGGTTAACAACAA
CCAACATAATGGTCGTGTAAAGTggcttgaaaaatatttgatccCTCTTG
TGAAGCGAGCGGTGATTGAGAGCGTACacaaagaaaaggaaaagaTTAAC
TCTACCGTTTCCAGCACAAGTACAAGCCTAAAtaaaaaagttgtcaaaga
aaaagttgaaagttCAATCGATGAAGAGATTTTGAAAACAGATACCAAAT
GGAGTCCGTCAAGTGAAGGAGATGAAAGTCGAATGGTGACCATCACCATT
CCATACAATGATGCAGGAAAAAATGCAATAAGAATCAGCTTTGACTGAAC
CCTTTATAGAATGCTTTGGGCAATAAAACATACTGGAACAGAAACATTTG
ATTAGATTGGGAACAAACTCGTATTTAAGGAAATGATaaacataaataaa
taaaaacaaatgaaaaagcaCTGAGatttgcacaaacaattttgaaaaaa
tgaaaagaaaaatattctgGTTTgtaaactaaaaatttagaaattcaaaa
aacttcatttatttttatgttaattGTATTATGTCATAATTATCATAATT
ACATATAGGAATTAGCTTGCTTTGCATGACATTATGATTAGAATGATTAT
GATAAATTGTATGGTTGTAGTATAGTATTGcacaaatatcttaaaattta
gTAGATAACCCAATTTGTTGTTTGATTCCATGCTTTGACCACTCTCTAAA
TGAATAGCCAATGTTGTGTATTGAGCACAGCAATGTAATAGCAAATTCAT
TTTACTCTAATTATTTTGCACAGATATGTTATTGATCTCCTCTGCAGATA
TGTAAAATCTACTCTAATCAGTGGTTGATCAAGATACATTTCTtgaaatt
tacatttttcaaaaagaacatGCAACAAGTggtacttttatggacctaca
tggttatcaaaactaatcaatgaacattgaaacaatctgaaacaatgaaa
cacataagacataacgggacaaaatacaaaaaaatataatgaaagcatat
ctattgggagaaactattaacactattgaaaaagacttttgaaaaataaa
taaacaagtgatacttttatggacctacctggttatgcatttaacacata
ccaggtgcaccaaaaaaagatTACAGGTTTgttgagatattgtgagcttc
aggattcaaattttttgttcattcttttttaatcgtatATAGGATGCTCT
AACTTGAATTTTGAGCTATCATACATTAGGTTTGAAAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032563XLOC_032563Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051388-exon-scaffold_201-1491911889:456506..456693TCONS_00051388-exon-scaffold_201-1491911889:456506..456693Clytia hemisphaericaexon
TCONS_00051388-exon-scaffold_201-1510915933:456506..456693TCONS_00051388-exon-scaffold_201-1510915933:456506..456693Clytia hemisphaericaexon
TCONS_00051388-exon-scaffold_201-1575043694:456506..456693TCONS_00051388-exon-scaffold_201-1575043694:456506..456693Clytia hemisphaericaexon
TCONS_00051388-exon-scaffold_201-1491911889:458291..460645TCONS_00051388-exon-scaffold_201-1491911889:458291..460645Clytia hemisphaericaexon
TCONS_00051388-exon-scaffold_201-1510915933:458291..460645TCONS_00051388-exon-scaffold_201-1510915933:458291..460645Clytia hemisphaericaexon
TCONS_00051388-exon-scaffold_201-1575043694:458291..460645TCONS_00051388-exon-scaffold_201-1575043694:458291..460645Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_201supercontigscaffold_201:456506..460645 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.135278	0.182304	0.146475	0.152972	0.410342	0.670562	1.39998	1.43748	1.56458	3.19338	0.816902	0.755586	2.46019	1.42562	1.43174	0.466645	0.844773	0.902015	3.15536	4.70637	1.37399	1.67612	1.66409	2.01113	8.88226	7.96379	1.81812	1.59324	1.7585	0.916515
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051388 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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