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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051387 ID=TCONS_00051387|Name=TCONS_00051387|organism=Clytia hemisphaerica|type=transcript|length=2411bp
GAAGAATATAAAGAACTAGAAAAAGTGGACAAACTCAATTTTTCATAAGG
AAAGAGGATTGCAATGGAAGAAAAACTTAAGAGATACATTCAATCCTATG
TTGACGAATGCAAACCTTCGCAAAATGAGATCAGTCAAGGCAAAAAAGTG
ATGAACAATATTTTCAGACTTCTTCAAGCTTCAAGAAAATATTCCATTGA
CCGAGAAAGATTGGCAGGGAGTACAGCTAAAAAGACAGCCATTTCTGGTC
ACATAGATTTTGATTGTGTTGTGTTTGTGAATCCTCAAGACAAACAAGGC
TTCAATGTTAAAATTCCTGAAGTTCTGGATAATTTTGAAGAGATTCTGAT
ATctaatgaaaaatttgatctggaagaaaaagatttcaggaaaaCACCAA
GACGGAATCCAAGCACATTACAGGTCACAATTGATGATATTGGTTTTGAT
ATCTGCGTTGGTTTGAACCAAACATACCACAGTAACCATAGAGATAAAAA
AGGGCAGAGCGTTGCATTTGTTGAAAGAAGTATTGAGTTTACCAAACAAA
AGAGTGCATTTGCCCATGAAGTTGCTCGCTTGGCAAAATTTTGGAACAAG
ACAATTGTCTTAGAGTTGCTGACACCTAATTCCTATGTTTCTGGAAGATC
CACAATCATGGAGTTGATTGCTTTTGCAGCAGCAGCTGAAGCggctgaag
aagaaaaacatgCAAGACATAGGTTGTCCCATCTGAATGCCTTCAGAAAA
TTCCTTGTAATGTTGAGAGATATTGAGGAGCTCAAGATATCACACAGAAA
TTTCTGGAGTAGCAACGGAATTCCTAATGTTTGTAANAGATATCACACAG
AAATTTCTGGAGTAGCAACGGAATTCCTAATGTTTGTAACCATATGGCCC
CCTATCTTATTGACCCATCTGACCCAGAAAATGATTTGCTGGAGACAATT
AAGCctgaaataagaacaattttctcTCAATGTGCAAGCACAACACTAGA
GCGTTTGGGATTGTATGAAATGGGAGGGATCAATGACATTTTTGAAATGT
ATCCATCATGGCATGGAAACAAATTTGCTCGATGGGAACCAAAAAATTGG
CTGGTAGGGACAGTAACAACAAACAGTGCATTTGTGGATTTGAAATACAA
CAAAGGAATGGTTAACAACAACCAACATAATGGTCGTGTAAAGTggcttg
aaaaatatttgatccCTCTTGTGAAGCGAGCGGTGATTGAGAGCGTACac
aaagaaaaggaaaagaTTAACTCTACCGTTTCCAGCACAAGTACAAGCCT
AAAtaaaaaagttgtcaaagaaaaagttgaaagttCAATCGATGAAGAGA
TTTTGAAAACAGATACCAAATGGAGTCCGTCAAGTGAAGGAGATGAAAGT
CGAATGGTGACCATCACCATTCCATACAATGATGCAGGAAAAAATGCAAT
AAGAATCAGCTTTGACTGAACCCTTTATAGAATGCTTTGGGCAATAAAAC
ATACTGGAACAGAAACATTTGATTAGATTGGGAACAAACTCGTATTTAAG
GAAATGATaaacataaataaataaaaacaaatgaaaaagcaCTGAGattt
gcacaaacaattttgaaaaaatgaaaagaaaaatattctgGTTTgtaaac
taaaaatttagaaattcaaaaaacttcatttatttttatgttaattGTAT
TATGTCATAATTATCATAATTACATATAGGAATTAGCTTGCTTTGCATGA
CATTATGATTAGAATGATTATGATAAATTGTATGGTTGTAGTATAGTATT
GcacaaatatcttaaaatttagTAGATAACCCAATTTGTTGTTTGATTCC
ATGCTTTGACCACTCTCTAAATGAATAGCCAATGTTGTGTATTGAGCACA
GCAATGTAATAGCAAATTCATTTTACTCTAATTATTTTGCACAGATATGT
TATTGATCTCCTCTGCAGATATGTAAAATCTACTCTAATCAGTGGTTGAT
CAAGATACATTTCTtgaaatttacatttttcaaaaagaacatGCAACAAG
Tggtacttttatggacctacatggttatcaaaactaatcaatgaacattg
aaacaatctgaaacaatgaaacacataagacataacgggacaaaatacaa
aaaaatataatgaaagcatatctattgggagaaactattaacactattga
aaaagacttttgaaaaataaataaacaagtgatacttttatggacctacc
tggttatgcatttaacacataccaggtgcaccaaaaaaagatTACAGGTT
Tgttgagatattgtgagcttcaggattcaaattttttgttcattcttttt
taatcgtatATAGGATGCTCTAACTTGAATTTTGAGCTATCATACATTAG
GTTTGAAAAGG Run BLAST on NCBI protein sequence of TCONS_00051387-protein >TCONS_00051387-protein ID=TCONS_00051387-protein|Name=TCONS_00051387-protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
MEEKLKRYIQSYVDECKPSQNEISQGKKVMNNIFRLLQASRKYSIDRERL
AGSTAKKTAISGHIDFDCVVFVNPQDKQGFNVKIPEVLDNFEEILISNEK
FDLEEKDFRKTPRRNPSTLQVTIDDIGFDICVGLNQTYHSNHRDKKGQSV
AFVERSIEFTKQKSAFAHEVARLAKFWNKTIVLELLTPNSYVSGRSTIME
LIAFAAAAEAAEEEKHARHRLSHLNAFRKFLVMLRDIEELKISHRNFWSS
NGIPNVCXRYHTEISGVATEFLMFVTIWPPILLTHLTQKMICWRQLSLK Run BLAST on NCBI transcript from alignment at scaffold_201:455473..460645+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051387 ID=TCONS_00051387|Name=TCONS_00051387|organism=Clytia hemisphaerica|type=transcript|length=5173bp|location=Sequence derived from alignment at scaffold_201:455473..460645+ (Clytia hemisphaerica)
GAAGAATATAAAGAACTAGAAAAAGTGGACAAACTCAATTTTTCATAAGG
AAAGAGGTAAGATTAAAATCAATTAAGTGATTTTAAAATCGAGAAGGAAA
AAGAGAAACAATGTTTTGTttggaaaatttaattttaaatttatatgCAG
AGCTCAAAGAATCCTATAATTTATATATTCAGATAACAGTTTGTTAATCA
GTTTGTTAAAGTATAATCACATAAACAAAAGTATTGCACATCAAGGGGCA
TTCTAAAATTAAAACACCTAGATATAAAAAGTGTAGTTGAGAAAATAGAC
CAGACATTTCTTTTATAATATGCAACCTTTGAAGTAGtaaaataacaaac
aaaataatattGGTGTCACTTTGAAACAATCAATTTCTTAGAACTATGTA
TGTAACAAAGAAAAATACTGTAAGTGCTATCATTTTTTGATGAGCtgtga
attttgtttttttatagaagGATAAATAAAATGGAATGAGTTGGCTGATG
TGCAGAAATTTTGTTCAGCTTGTCACTTATCAAAATTAACAGGTtaccag
aaagtcaaaaaaatacTGAGAATGTGAAAGGCTAACATCTGCAACAAAGT
AAGGCCATATGTAatgtagtttttttaatatAGTTAAATGATGAATGGAT
TCATTGGTAAATAATTTGACGCGCAGCAATAAATGATTTTACTTTTGAAA
CCACTTTTTTTAAAggaaacattcaaaaaaaagtgttttcaaaGCTAATC
TAAAGTTTAACacgcaaaatttaaatttaacacTTTCCACTCTATATTCT
AACAGTTTCTCAAAGTTTAAATTCTAGCATTTTCGAAACACTAGTACAAC
TCAGCTTAATCTGGTTAGATTgttaaaaaattgtaaaattagaGTAGATT
ATATATTATTACATGTAGTGTGGTTATCAAGGATAATTGcaggaaaactt
tttatttttccttgTAGAAAAAACCACTTTGTTGAACATCCCTTTTTGGG
GCAGTTTCTCTCTTCCCAAGGCAAAACAATAAaggccaaaacttttaaaa
acgttAATCTATTTTCAAGCAATATCATTGATACTATTCGatactatact
atactatactCTCCAGTTTAAATGGAAGACTTAAAAAAAGGTATGGCGGA
TTTCCTTAGTTGACTCTAAATAACTTTGGACCAAAATTCAGCCGAAAGGC
AAACTTGTGCCTGAGAGTAAGGTAAGAAAACTGACTATACCTGTCTTGAC
TTCTATATAATTATATATAGTTTGTGGAGAGCCTCATAAAAACATTGACC
TTTAGGGTTTGCCTTAGgagaaacaagcaacatgctgaatggacctacct
aatgattaacatcagatgaaaataagaaaaaagtgacaataattgtacaa
aaattcagaatggaaaaataaNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcacg
ttctgggcattgccattttgcatcattgtgcaaaaaatcagaaaaaacta
atgagccaatcctgagaaaagctggtaacagacggacggacggatgaacg
aacgaacggacatgggttaatttatagaacctccagcCCGGCCCGGAGGT
AGGTctgggtaggtccaaaaaatgctGTGACAACAAAAGTGAAGCAGTGT
GCTATTTCAAAAAACCTGAGCAAAAGGTGTGCTCAAAATAAAGGTTACGC
TACATAATGATTCCTTGGGACTCCCCAAAATACATCAGATAAAAATGGCC
ACTATAGTCACAACATTTTTTTACTGATATAAAGGTGCCCTGATGTCACC
AGaataatataaaaagaaatgaaattttgaaaacttgaatGATCTTATta
aaatgatgaatttcttgcaTTGCTCTAGACTTTGTGAGTTAGGTAAAAAG
TTCTATTCTTTTTTTCAGGATTGCAATGGAAGAAAAACTTAAGAGATACA
TTCAATCCTATGTTGACGAATGCAAACCTTCGCAAAATGAGATCAGTCAA
GGCAAAAAAGTGATGAACAATATTTTCAGACTTCTTCAAGCTTCAAGAAA
ATATTCCATTGACCGAGAAAGATTGGCAGGGAGTACAGCTAAAAAGACAG
CCATTTCTGGTCACATAGATTTTGATTGTGTTGTGTTTGTGAATCCTCAA
GACAAACAAGGCTTCAATGTTAAAATTCCTGAAGTTCTGGATAATTTTGA
AGAGATTCTGATATctaatgaaaaatttgatctggaagaaaaagatttca
ggaaaaCACCAAGACGGAATCCAAGCACATTACAGGTCACAATTGATGAT
ATTGGTTTTGATATCTGCGTTGGTTTGAACCAAACATACCACAGTAACCA
TAGAGATAAAAAAGGGCAGAGCGTTGCATTTGTTGAAAGAAGTATTGAGT
TTACCAAACAAAAGAGTGCATTTGCCCATGAAGTTGCTCGCTTGGCAAAA
TTTTGGAACAAGACAATTGTCTTAGAGTTGCTGACACCTAATTCCTATGT
TTCTGGAAGATCCACAATCATGGAGTTGATTGCTTTTGCAGCAGCAGCTG
AAGCggctgaagaagaaaaacatgCAAGACATAGGTTGTCCCATCTGAAT
GCCTTCAGAAAATTCCTTGTAATGTTGAGAGATATTGAGGAGCTCAAGAT
ATCACACAGAAATTTCTGGAGTAGCAACGGAATTCCTAATGTTTGTAANA
GATATCACACAGAAATTTCTGGAGTAGCAACGGAATTCCTAATGTTTGTA
ACCATATGGCCCCCTATCTTATTGACCCATCTGACCCAGAAAATGATTTG
CTGGAGACAATTAAGCctgaaataagaacaattttctcTCAATGTGCAAG
CACAACACTAGAGCGTTTGGGATTGTATGAAATGGGAGGGATCAATGACA
TTTTTGAAATGTATCCATCATGGCATGGAAACAAATTTGCTCGATGGGAA
CCAAAAAATTGGCTGGTAGGGACAGTAACAACAAACAGTGCATTTGTGGA
TTTGAAATACAACAAAGGAATGGTTAACAACAACCAACATAATGGTCGTG
TAAAGTggcttgaaaaatatttgatccCTCTTGTGAAGCGAGCGGTGATT
GAGAGCGTACacaaagaaaaggaaaagaTTAACTCTACCGTTTCCAGCAC
AAGTACAAGCCTAAAtaaaaaagttgtcaaagaaaaagttgaaagttCAA
TCGATGAAGAGATTTTGAAAACAGATACCAAATGGAGTCCGTCAAGTGAA
GGAGATGAAAGTCGAATGGTGACCATCACCATTCCATACAATGATGCAGG
AAAAAATGCAATAAGAATCAGCTTTGACTGAACCCTTTATAGAATGCTTT
GGGCAATAAAACATACTGGAACAGAAACATTTGATTAGATTGGGAACAAA
CTCGTATTTAAGGAAATGATaaacataaataaataaaaacaaatgaaaaa
gcaCTGAGatttgcacaaacaattttgaaaaaatgaaaagaaaaatattc
tgGTTTgtaaactaaaaatttagaaattcaaaaaacttcatttattttta
tgttaattGTATTATGTCATAATTATCATAATTACATATAGGAATTAGCT
TGCTTTGCATGACATTATGATTAGAATGATTATGATAAATTGTATGGTTG
TAGTATAGTATTGcacaaatatcttaaaatttagTAGATAACCCAATTTG
TTGTTTGATTCCATGCTTTGACCACTCTCTAAATGAATAGCCAATGTTGT
GTATTGAGCACAGCAATGTAATAGCAAATTCATTTTACTCTAATTATTTT
GCACAGATATGTTATTGATCTCCTCTGCAGATATGTAAAATCTACTCTAA
TCAGTGGTTGATCAAGATACATTTCTtgaaatttacatttttcaaaaaga
acatGCAACAAGTggtacttttatggacctacatggttatcaaaactaat
caatgaacattgaaacaatctgaaacaatgaaacacataagacataacgg
gacaaaatacaaaaaaatataatgaaagcatatctattgggagaaactat
taacactattgaaaaagacttttgaaaaataaataaacaagtgatacttt
tatggacctacctggttatgcatttaacacataccaggtgcaccaaaaaa
agatTACAGGTTTgttgagatattgtgagcttcaggattcaaattttttg
ttcattcttttttaatcgtatATAGGATGCTCTAACTTGAATTTTGAGCT
ATCATACATTAGGTTTGAAAAGG Coding sequence (CDS) from alignment at scaffold_201:455473..460645+ >TCONS_00051387 ID=TCONS_00051387|Name=TCONS_00051387|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at scaffold_201:455473..460645+ (Clytia hemisphaerica)
ATGGAAGAAAAACTTAAGAGATACATTCAATCCTATGTTGACGAATGCAA
ACCTTCGCAAAATGAGATCAGTCAAGGCAAAAAAGTGATGAACAATATTT
TCAGACTTCTTCAAGCTTCAAGAAAATATTCCATTGACCGAGAAAGATTG
GCAGGGAGTACAGCTAAAAAGACAGCCATTTCTGGTCACATAGATTTTGA
TTGTGTTGTGTTTGTGAATCCTCAAGACAAACAAGGCTTCAATGTTAAAA
TTCCTGAAGTTCTGGATAATTTTGAAGAGATTCTGATATctaatgaaaaa
tttgatctggaagaaaaagatttcaggaaaaCACCAAGACGGAATCCAAG
CACATTACAGGTCACAATTGATGATATTGGTTTTGATATCTGCGTTGGTT
TGAACCAAACATACCACAGTAACCATAGAGATAAAAAAGGGCAGAGCGTT
GCATTTGTTGAAAGAAGTATTGAGTTTACCAAACAAAAGAGTGCATTTGC
CCATGAAGTTGCTCGCTTGGCAAAATTTTGGAACAAGACAATTGTCTTAG
AGTTGCTGACACCTAATTCCTATGTTTCTGGAAGATCCACAATCATGGAG
TTGATTGCTTTTGCAGCAGCAGCTGAAGCggctgaagaagaaaaacatgC
AAGACATAGGTTGTCCCATCTGAATGCCTTCAGAAAATTCCTTGTAATGT
TGAGAGATATTGAGGAGCTCAAGATATCACACAGAAATTTCTGGAGTAGC
AACGGAATTCCTAATGTTTGTAANAGATATCACACAGAAATTTCTGGAGT
AGCAACGGAATTCCTAATGTTTGTAACCATATGGCCCCCTATCTTATTGA
CCCATCTGACCCAGAAAATGATTTGCTGGAGACAATTAAGCctgaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051387-exon-scaffold_201-1491911889:455473..455528 | TCONS_00051387-exon-scaffold_201-1491911889:455473..455528 | Clytia hemisphaerica | exon |
| TCONS_00051387-exon-scaffold_201-1510915933:455473..455528 | TCONS_00051387-exon-scaffold_201-1510915933:455473..455528 | Clytia hemisphaerica | exon |
| TCONS_00051387-exon-scaffold_201-1575043694:455473..455528 | TCONS_00051387-exon-scaffold_201-1575043694:455473..455528 | Clytia hemisphaerica | exon |
| TCONS_00051387-exon-scaffold_201-1491911889:458291..460645 | TCONS_00051387-exon-scaffold_201-1491911889:458291..460645 | Clytia hemisphaerica | exon |
| TCONS_00051387-exon-scaffold_201-1510915933:458291..460645 | TCONS_00051387-exon-scaffold_201-1510915933:458291..460645 | Clytia hemisphaerica | exon |
| TCONS_00051387-exon-scaffold_201-1575043694:458291..460645 | TCONS_00051387-exon-scaffold_201-1575043694:458291..460645 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_201 | supercontig | scaffold_201:455473..460645 + |
Blast
The following BLAST results are available for this feature:
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