TCONS_00051382 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051382
Unique NameTCONS_00051382
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1807

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051382 ID=TCONS_00051382|Name=TCONS_00051382|organism=Clytia hemisphaerica|type=transcript|length=1807bp
TCATGCTGTAAGGAAAATTACCTTCCTGTTATTACTCAAGGAAAAtgata
ttatatttttcaaggaaaatgatttaaatttaaattcctCAAGTAATTTT
TTGATTGATACACTCTGAATTGTTTGACATCaacagtttaaaaaaagatt
cctcCCCCTCCTAGTAAATTTTTATAACCACTAATGAAATCATTCCATTT
TTAAGGAACTCAAAAAAAACTATATGATGACAACACACGTTTGTAATAAG
AATGACAGTTCAAAGCAAAGGTTTGGTGTGGTTCGTATCAAACCTTTAGG
TGCTGGTGGAGGAGGGGTGGAAACAAGTTCCGCCACAGGAAAGTCAATCA
TAGACTTCTCAAaggACCATGTTTCAGTTCGAGACCGCAAGAAATACAGT
TATCCAAGCATGATTATCCCTCCTCGTATGAAACAAGATGAATTATTTGA
TAACTTCATGCCAAAATGTATTGATGACTTCTTTCAAGGGTACAACGTGA
ACGTGATTGCATACGGACAGACAGGGACGGGAAAAACACACACTATGTTT
GGACCACCTGGTTGCATGAAACGTGCTGCCCGcGGAGAGTACAGTTACGA
AACCCATCAAACTTATGGATTGTTCCCTCGTGGAATTTTGGAGATCTTTC
GAAAAGTACATGAATGCAATACAACTGAATCACAATCATCATCATCGAAT
ATTTACGCGTTGACGTGCTCAGCTGTGGAACTTTGCCATATGGGAAATGA
GGATATGTTTAATAAGTCTGAGAAGAGAGATTATTCGTTTGCGAACGGCT
CTGGTTCCCTTGGCATCATCTTGAACAGAGACGAGAAACCACCAAGGTTG
TATGGACAGAATGAATATGAAATCAAAACCTATGATGATATCTTAAGAGT
ATTTGCTGCAATCGCGTCACGAAACACGGAAGGCACGTTACTAAATGATA
CGTCATCACGCTCACACTGTTTGGTCGCGCTGAAGTTGTGGCGATATGAC
GTCAGTACTAAAATGGTGTTCAAAACACGATTTCAATTTTGTGATTTGGC
AGGATCTGAAAAACTTGACAAGGCACATTCAGACACCTCCATGAAGCTGC
CCAACGGTGAATGGAACCATCTAGCAATCATGGGGATGTCTACAAACTTC
AGTTACACAGAACTCCAACGTTGTCTCAATGATATTGCAATACAAAAGAA
ACAGAACAGGAAATTCAACTTTCGGGCATACGTCACAGATCTCTTATTCT
TGCTTTCTGGAAGCCTCGTCGGAAATGCGATCACAGCGCTCTTCGTTTGT
GTGTCTCAAGCAGAATCTAATAAAGCTGAATCGAATTACGCGTTAGATTT
CGGTGAAAAGTTCTCTAAACTGGATATGAATTGCCAGAAAGTAAAAGGAC
GTCTTTTAGAGGATCTCCAAAAAGAGTTATTGAAATCAATCGATGATAAT
TGTCGACAGATAGATAGTGCTTCGACTTGGAAAAACCGGTATACTATGAT
GAGAAAAGCTCAAGTTCGTGATTGTGAAcaaatattgaatgttttgaagA
ACTTTAGTGAAGAAAAAATGGGTAGTGTGAAATCAATGAACTGAAGCTCA
TGAATTGACCTACAACgtttgctgacgtgtggaattTCAATTTGGTAGGT
AATAGAAATTGACAGTCAAAAAAATAATGACTTTAGAAAATAGAACTTTT
CATagattacgttacgaacatcattcgcctcgttttgaaattattgccat
ggtaattaactcccagcggattttattaaaacatttcctattcataaaaa
atcaatt
Run BLAST on NCBI

protein sequence of TCONS_00051382-protein

>TCONS_00051382-protein ID=TCONS_00051382-protein|Name=TCONS_00051382-protein|organism=Clytia hemisphaerica|type=polypeptide|length=456bp
MMTTHVCNKNDSSKQRFGVVRIKPLGAGGGGVETSSATGKSIIDFSKDHV
SVRDRKKYSYPSMIIPPRMKQDELFDNFMPKCIDDFFQGYNVNVIAYGQT
GTGKTHTMFGPPGCMKRAARGEYSYETHQTYGLFPRGILEIFRKVHECNT
TESQSSSSNIYALTCSAVELCHMGNEDMFNKSEKRDYSFANGSGSLGIIL
NRDEKPPRLYGQNEYEIKTYDDILRVFAAIASRNTEGTLLNDTSSRSHCL
VALKLWRYDVSTKMVFKTRFQFCDLAGSEKLDKAHSDTSMKLPNGEWNHL
AIMGMSTNFSYTELQRCLNDIAIQKKQNRKFNFRAYVTDLLFLLSGSLVG
NAITALFVCVSQAESNKAESNYALDFGEKFSKLDMNCQKVKGRLLEDLQK
ELLKSIDDNCRQIDSASTWKNRYTMMRKAQVRDCEQILNVLKNFSEEKMG
SVKSMN
Run BLAST on NCBI

transcript from alignment at scaffold_201:332236..343922+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051382 ID=TCONS_00051382|Name=TCONS_00051382|organism=Clytia hemisphaerica|type=transcript|length=11687bp|location=Sequence derived from alignment at scaffold_201:332236..343922+ (Clytia hemisphaerica)
TCATGCTGTAAGGAAAATTACCTTCCTGTTATTACTCAAGGAAAAtgata
ttatatttttcaaggaaaatgatttaaatttaaattcctCAAGTAATTTT
TTGATTGATACACTCTGAATTGTTTGACATCaacagtttaaaaaaagatt
cctcCCCCTCCTAGTAAATTTTTATAACCACTAATGAAATCATTCCATTT
TTAAGGAACTCAAAAAAAACTATATGATGACAACACACGTTTGTAATAAG
AATGACAGTTCAAAGCAAAGGTTTGGTGTGGTTCGTATCAAACCTTTAGG
TGCTGGTGGAGGAGGGGTGGAAACAAGTTCCGCCACAGGAAAGTCAATCA
TAGACTTCTCAAaggttttttgtgtttttattttgttccaGTATTGGTTT
TTCAGGAAAATGATTCCCAGTTGCAGAGGAAGTGATCTTCATTATATTTC
TGGGAATATAACCCCTGTGTGTAAGATACATCTTACACAagggaatttat
ttttcaataaaaaacatatCTTTATAATTCTAAAGGAAAATCACTTTCCT
GATATCTCAAGAAATAAATGTTTTTTGCAAGACAAATTATGTTTTTGTTC
TCATAGAAACTGATAGAAATGATGTTCTGAATgctctttatatttttttt
ccaggaaATTTTAACATAACGTCAGACTGGGTTTAGGTCGCAGAAATTAG
GTTCCctctgagttttaagtcccccaaaagattcataaatttttttggta
GCCCCCAGGGCTTTCTACCCTCAacacttttaaaagtttttcaatttcaa
tttcacttTGAAAACTACTTATGTagtatttttcaagaaaattaccgttg
tatttctcaaggaaaattgCCTATGTTATTCTcaaagaaaatcttttggt
aTTCTCAAGtaaaattacttttttgtatttctcaaggaaaattactcttc
tatttctaaaggaaaattatttttgtatttctcaaggaaaaccagggggg
cacgcagttactacaagacatgatgtgtagtaagtgctttttcaacactt
tttttcaggaccaccaccctttgcagttactacNtaagcacttactacac
caaaagtgctagcgttagtgtttggcaccacccccaaacagcagttacta
cactgtgtagtaactgttttcataatacagtaccaccacggtagtaagtg
tcatactgtcttgtagtaactgcgtgcccccccccccacctgGGAAAACT
AcctttgtatttctcaaggagaATTACCTTTGCATTTTCTCAaggaaagc
ttttttttttactgGCATATTTAAAAAGTCTTACAGACCTACTTTTCCGG
GACAGTTAATTGTCTTGTTGTCTGGTaggtttatttttttcattttttaa
taatttattaCTGTATCCCTTTCATAACCTTcagtcttctttttttaata
ggACCATGTTTCAGTTCGAGACCGCAAGAAATACAGTTATCCAAGCATGA
TTATCCCTCCTCGTATGAAACAAGATGAATTATTTGATAACTTCATGCCA
AAATGTATTGATGACTTCTTTCAAGGTATCCAAAAAAATACTGCTAAATA
TCAATAGATTATAACTACCAAGAAATGACATCAATGGGTCTTGATGAATG
ATTGTCTATCATATTACATCGTGCTGTGTCGTGTTGTGATTGTCTTTTGA
TTTTCCATTTAGTGTAAAAGTTTTCTAATTTGTTTGTTAGGGTACAACGT
GAACGTGATTGCATACGGACAGACAGGGACGGGAAAAACACACACTATGT
TTGGACCACCTGGTTGCATGAAACGTGCTGCCCGGTAAGTTTGATTCTGG
TTTTGTTTAAACAAATTAATTTTATGGGATAGTGTTAAAATGAAAGTATT
TTTAATAGAGTACAGAAATTATGATTTTATCCAATGGGAGGGACTGATTT
ATATATCATGATAAGATTTTGCCATCGCTTCACTATCATTGATACACTTT
CCATTTCTGAAGTTTGCTGTTAGATTGACTTGATTAATCAAAACATGCAT
CCCGAAGTTGAATATTATATAGAATGGTTGCGCTAAATTCAGTTTTATAA
ACAATCTTCAACCAAAACCAAAACCTGTTAACCGTTTCTAATCAACATAA
TCAATTTCAACCACAGAAAAAAAAGGGACAAAACTGTGCGACAAAgggga
aatatttttaaaatgtttgtgCTAAGGAGGAAGGGCTAGATCACCTGTAC
ATACTCTCTTTCTGCCATTTCTAGAAAAAATGGCTGATTGTCGGTAAGAA
TTACAGTTGTTTACAGTCTGTTTGTGTAATTGGAAAATTTCCTGGATCAA
GCAAAAGTTTTAATTGATCTTTATTTTCAGCGGAGAGTACAGTTTACGAA
ACCCATCAAACTTATGGATTGTTCCCTCGTGGAATTTTGGAGATCTTTCA
AAAAGTACATGAATGCAATAAAAATTACAGTTGTTTACAGTCTGTTTGtg
taattgataaattttctgGATCAAGCAAAAGTTttaattattcattattt
tcagcGGAGAGTACAGTTACGAAACCCATCAAACTTATGGATTGTTCCCT
CGTGGAATTTTGGAGATCTTTCGAAAAGTACATGAATGCAATACAACTGA
ATCACAATCATCATCATCGAATATTTACGCGTTGACGTGCTCAGCTGTGG
AACTTTGCCATATGGGAAATGAGGATATGTTTAATAAGGTTTNTCACAAT
CATCATCATCGAATATTTACGCGTTGACGTGCTCAGCTGTGGAACTTTGC
CATATGGGAAATGAGGATATGTTTAATAAGGTTTTtaaatctacaatcag
tgacaaaatacttgacacaaaagggaaatccaacgggaagttttgaaacc
acaatcgatttgttagtgctctaaagtaggttcgaagggtagagttttaa
ctctgagttttaacgctagacttaagacctttgtgcactaactccaaaca
aaagaaaagtgtcaatattgcaattaaaattttttcccgctcaaaaaaga
TTCTTCGAAAAAATAAATGAGTGTGGATTTGNgaaaagtgtcaatattgc
aattaaaattttttcccgctcaaaaaagattcttcgaaaaaataaatgag
tgtggatttgtttgttaaaaattcttcatttgagttgattttgttttaag
agtttgttgttgcttgataaattgttttctcgctacgcaagtttctgctt
ACCTAGCCCCAGTATCTATAAGgccggaacaccggattcttccaggcgtt
tatacaaactaaaacCTGtgacaataatcgtattatcatataacgcctat
actactgatTTTAAACACATTATAAATGACTCCAGTCTATAAGGTTTGTA
TTTATTTGGATTTCATCGAATTTGCTTATTGGATGTTGAAAAGTTTAAAC
ATTCATTGTATAaactggtctggaagcttatgtttcaactttttgttagt
ttttttttcttttgttattgatcacgttaccaagtactcttcttgggatt
ggtttaatatttaatcacgtgatcaaaaagtgagcaaaacaagcaaattt
ttcaactcaagttcaagtaagaaacaatggaaagaaacaaaaggcttcca
gaccggggttttttatacggactatcgGGGTGGAAAAATGGTGGAAAAAT
CTCCGTAGACACTCTGACTATGTCGTTACGTTTGAACATGATCTGACTAT
CAGGATCTTTGGAAACATATTCCCTCTTCTTTTTGACAGTCTGAGAAGAG
AGATTATTCGTTTGCGAACGGCTCTGGTTCCCTTGGCATCATCTTGAACA
GAGACGAGAAACCACCAAGGTTGTATGGACAGAATGAATATGAAATCAAA
ACCTATGATGATATCTTAAGGTACCAATTCCATGTCTTCTTTGTTAATCA
GGGGTAGCAAAAACATCACTAAtctctaactacttgactggatcggtCTT
TCTATGTATAAgaagtgtgtccagttttaCAGCTGACTAATCTGCCATCT
TGATTTCAATTCTGCTCGTCAACAGttagattcgaatgttttgaaatttg
aacgtTTGAAAATCTCGGGTAAAATAGAAGACAAATTAGAGGACTAATCG
ACTTAAAAGCTGGACATAATTTCACAAAGAATCTGTAAGCACAGTTAGCC
TATCTAgtgtgtaaaagaatatgatatcTGTGAAAACGAGGCGAAACCAA
AGTTGGCGCAGGCgggagaaaatttcgattttgcctCAAAAATGAAGCTA
CAGTGATTATTTAataaaagaactttttatttgaaaaaaagtgaggCCTT
GTCAAGTATGTTATGTGTTAAAAATGATCAACTTTGTGCTTAAAGACGTA
TATGTGAAGGGGTGTATGCATGATGATAATAAGATTGGAAAAGTTTCGCA
TGAATGTAAACCACAAGCCATCAATTGAAGTGATAATGATTTGTTTGTCT
CTTAGAATGAAGATAATTCTCTTCTTTTGATTTCGTCACCAGAGTATTTG
CTGCAATCGCGTCACGAAACACGGAAGGCACGTTACTAAATGATACGTCA
TCACGCTCACACTGTTTGGTCGCGCTGAAGTTGTGGCGATATGACGTCAG
TACTAAAATGGTGTTCAAAACACGATTTCAATTTTGTGATTTGGCAGGAT
CTGAAAAACTTGACAAGGTATAAAAACTATTATTAACTTATTCGCAAACG
GATTTGTATTGTATGataaaaggaaatattttgatttttaggggcttggt
cacgagttttagcctcaaaacgaggctaaaaactttggaaaactttgata
ttttgcacacttgttccttggctATATATctggtttttggacctacctcc
gggtgccccggtggaggtcctatgaattaacctgtgtatgttcgttcgtt
cgttcgtccgtccgttcgtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CCAGAGCATGCTCAGAACTGCTTGTTTGgtgtatattcttttatatattc
atggttcttgcagaaaatgtttttgagaaagccatagataaaagagcaaa
tactgtaaatggttttgaagaaaagtttgaagaaaaaataagacaattta
taatattaaatactttacacacttcagtttcatttcgtgaatatttaaaa
catagtaaaaaagttcgataatttattcttataaccatttttttatgaaa
tttctttgtagcgaattaattggctgacaatcaagcaaaaacttttcatg
ttgagtatgtttacattataaaaccaaaaatggattatattttgaaaaca
gtgatcaagttaaaaaataaaggagattatttatataatacatacaaggg
aatacaatatattcttaagatggaaaaataaaagattgccaaaaagtggA
GTACACCATGAGTGGATATAATGTGTTTTATGCGCAAATTCTAGCTCTCA
AATTAGATGAATAATCtgataaaaaagtactttttacattcaaagtaaaa
agtttgatgttttaAGCATTATTAAAAGTACTAACAGAAATCATCAACAA
TCTAtaggaaagcactttttcaactttcacaattgtatggagtattgttt
ataattcttttggtagagattgttgttatatatcatttcaaaaattctgc
attcaatcgtactcttttatgcttacttgtagggggtggaagatgcaGGG
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNccccctcagatccgccgctgTAATAACCATAAT
TTCTGACGAGAAAGTTCagtatttttggtaaaaatactGATCGGTTCGTA
AAATACTAACCAGACAGGGTGACCAAACTGAAATGTTGGATTTGccggaa
aaatcttttcattttctcttattTAACTCCAATATTTTGCCTTTTATATT
AGGCACATTCAGACACCTCCATGAAGCTGCCCAACGGTGAATGGAACCAT
CTAGCAATCATGGGGATGTCTACAAACTTCAGTTACACAGAACTCCAACG
TTGTCTCAATGATATTGCAATACAAAAGAAACAGAACAGGAAATTCAACT
TTCGGGCATACGTCACAGATCTCTTATTCTTGCTTTCTGGAAGCCTCGTC
GGAAATGCGATCACAGCGCTCTTCGTTTGTGTGTCTCAAGCAGAATCTAA
TAAAGCTGAATCGAATTACGCGTTAGATTTCGGTGAAAAGTTCTCTAAAC
TGGATATGAATTGCCAGAAAGTAAAAGGACGTCTTTTAGAGGATCTCCAA
AAAGAGTTATTGAAATCAATCGATGATAATTGTCGACAGATAGATAGTGC
TTCGACTTGGAAAAACCGGTATACTATGATGAGAAAAGCTCAAGTTCGTG
ATTGTGAAcaaatattgaatgttttgaagAACTTTAGTGAAGAAAAAATG
GGTAGTGTGAAATCAATGAACTGAAGCTCATGAATTGACCTACAACgttt
gctgacgtgtggaattTCAATTTGGTAGGTAATAGAAATTGACAGTCAAA
AAAATAATGACTTTAGAAAATAGAACTTTTCATagattacgttacgaaca
tcattcgcctcgttttgaaattattgccatggtaattaactcccagcgga
ttttattaaaacatttcctattcataaaaaatcaatt

Coding sequence (CDS) from alignment at scaffold_201:332236..343922+

>TCONS_00051382 ID=TCONS_00051382|Name=TCONS_00051382|organism=Clytia hemisphaerica|type=CDS|length=9597bp|location=Sequence derived from alignment at scaffold_201:332236..343922+ (Clytia hemisphaerica)
ATGATGACAACACACGTTTGTAATAAGAATGACAGTTCAAAGCAAAGGTT
TGGTGTGGTTCGTATCAAACCTTTAGGTGCTGGTGGAGGAGGGGTGGAAA
CAAGTTCCGCCACAGGAAAGTCAATCATAGACTTCTCAAaggACCATGTT
TCAGTTCGAGACCGCAAGAAATACAGTTATCCAAGCATGATTATCCCTCC
TCGTATGAAACAAGATGAATTATTTGATAACTTCATGCCAAAATGTATTG
ATGACTTCTTTCAAGGGTACAACGTGAACGTGATTGCATACGGACAGACA
GGGACGGGAAAAACACACACTATGTTTGGACCACCTGGTTGCATGAAACG
TGCTGCCCGcGGAGAGTACAGTTACGAAACCCATCAAACTTATGGATTGT
TCCCTCGTGGAATTTTGGAGATCTTTCGAAAAGTACATGAATGCAATACA
ACTGAATCACAATCATCATCATCGAATATTTACGCGTTGACGTGCTCAGC
TGTGGAACTTTGCCATATGGGAAATGAGGATATGTTTAATAAGTCTGAGA
AGAGAGATTATTCGTTTGCGAACGGCTCTGGTTCCCTTGGCATCATCTTG
AACAGAGACGAGAAACCACCAAGGTTGTATGGACAGAATGAATATGAAAT
CAAAACCTATGATGATATCTTAAGAGTATTTGCTGCAATCGCGTCACGAA
ACACGGAAGGCACGTTACTAAATGATACGTCATCACGCTCACACTGTTTG
GTCGCGCTGAAGTTGTGGCGATATGACGTCAGTACTAAAATGGTGTTCAA
AACACGATTTCAATTTTGTGATTTGGCAGGATCTGAAAAACTTGACAAGG
CACATTCAGACACCTCCATGAAGCTGCCCAACGGTGAATGGAACCATCTA
GCAATCATGGGGATGTCTACAAACTTCAGTTACACAGAACTCCAACGTTG
TCTCAATGATATTGCAATACAAAAGAAACAGAACAGGAAATTCAACTTTC
GGGCATACGTCACAGATCTCTTATTCTTGCTTTCTGGAAGCCTCGTCGGA
AATGCGATCACAGCGCTCTTCGTTTGTGTGTCTCAAGCAGAATCTAATAA
AGCTGAATCGAATTACGCGTTAGATTTCGGTGAAAAGTTCTCTAAACTGG
ATATGAATTGCCAGAAAGTAAAAGGACGTCTTTTAGAGGATCTCCAAAAA
GAGTTATTGAAATCAATCGATGATAATTGTCGACAGATAGATAGTGCTTC
GACTTGGAAAAACCGGTATACTATGATGAGAAAAGCTCAAGTTCGTGATT
GTGAAcaaatattgaatgttttgaagAACTTTAGTGAAGAAAAAATGGGT
AGTGTGAAATCAATGAACTGAATGATGACAACACACGTTTGTAATAAGAA
TGACAGTTCAAAGCAAAGGTTTGGTGTGGTTCGTATCAAACCTTTAGGTG
CTGGTGGAGGAGGGGTGGAAACAAGTTCCGCCACAGGAAAGTCAATCATA
GACTTCTCAAaggACCATGTTTCAGTTCGAGACCGCAAGAAATACAGTTA
TCCAAGCATGATTATCCCTCCTCGTATGAAACAAGATGAATTATTTGATA
ACTTCATGCCAAAATGTATTGATGACTTCTTTCAAGGGTACAACGTGAAC
GTGATTGCATACGGACAGACAGGGACGGGAAAAACACACACTATGTTTGG
ACCACCTGGTTGCATGAAACGTGCTGCCCGcGGAGAGTACAGTTACGAAA
CCCATCAAACTTATGGATTGTTCCCTCGTGGAATTTTGGAGATCTTTCGA
AAAGTACATGAATGCAATACAACTGAATCACAATCATCATCATCGAATAT
TTACGCGTTGACGTGCTCAGCTGTGGAACTTTGCCATATGGGAAATGAGG
ATATGTTTAATAAGTCTGAGAAGAGAGATTATTCGTTTGCGAACGGCTCT
GGTTCCCTTGGCATCATCTTGAACAGAGACGAGAAACCACCAAGGTTGTA
TGGACAGAATGAATATGAAATCAAAACCTATGATGATATCTTAAGAGTAT
TTGCTGCAATCGCGTCACGAAACACGGAAGGCACGTTACTAAATGATACG
TCATCACGCTCACACTGTTTGGTCGCGCTGAAGTTGTGGCGATATGACGT
CAGTACTAAAATGGTGTTCAAAACACGATTTCAATTTTGTGATTTGGCAG
GATCTGAAAAACTTGACAAGGCACATTCAGACACCTCCATGAAGCTGCCC
AACGGTGAATGGAACCATCTAGCAATCATGGGGATGTCTACAAACTTCAG
TTACACAGAACTCCAACGTTGTCTCAATGATATTGCAATACAAAAGAAAC
AGAACAGGAAATTCAACTTTCGGGCATACGTCACAGATCTCTTATTCTTG
CTTTCTGGAAGCCTCGTCGGAAATGCGATCACAGCGCTCTTCGTTTGTGT
GTCTCAAGCAGAATCTAATAAAGCTGAATCGAATTACGCGTTAGATTTCG
GTGAAAAGTTCTCTAAACTGGATATGAATTGCCAGAAAGTAAAAGGACGT
CTTTTAGAGGATCTCCAAAAAGAGTTATTGAAATCAATCGATGATAATTG
TCGACAGATAGATAGTGCTTCGACTTGGAAAAACCGGTATACTATGATGA
GAAAAGCTCAAGTTCGTGATTGTGAAcaaatattgaatgttttgaagAAC
TTTAGTGAAGAAAAAATGGGTAGTGTGAAATCAATGAACTGAATGATGAC
AACACACGTTTGTAATAAGAATGACAGTTCAAAGCAAAGGTTTGGTGTGG
TTCGTATCAAACCTTTAGGTGCTGGTGGAGGAGGGGTGGAAACAAGTTCC
GCCACAGGAAAGTCAATCATAGACTTCTCAAaggACCATGTTTCAGTTCG
AGACCGCAAGAAATACAGTTATCCAAGCATGATTATCCCTCCTCGTATGA
AACAAGATGAATTATTTGATAACTTCATGCCAAAATGTATTGATGACTTC
TTTCAAGGGTACAACGTGAACGTGATTGCATACGGACAGACAGGGACGGG
AAAAACACACACTATGTTTGGACCACCTGGTTGCATGAAACGTGCTGCCC
GcGGAGAGTACAGTTACGAAACCCATCAAACTTATGGATTGTTCCCTCGT
GGAATTTTGGAGATCTTTCGAAAAGTACATGAATGCAATACAACTGAATC
ACAATCATCATCATCGAATATTTACGCGTTGACGTGCTCAGCTGTGGAAC
TTTGCCATATGGGAAATGAGGATATGTTTAATAAGTCTGAGAAGAGAGAT
TATTCGTTTGCGAACGGCTCTGGTTCCCTTGGCATCATCTTGAACAGAGA
CGAGAAACCACCAAGGTTGTATGGACAGAATGAATATGAAATCAAAACCT
ATGATGATATCTTAAGAGTATTTGCTGCAATCGCGTCACGAAACACGGAA
GGCACGTTACTAAATGATACGTCATCACGCTCACACTGTTTGGTCGCGCT
GAAGTTGTGGCGATATGACGTCAGTACTAAAATGGTGTTCAAAACACGAT
TTCAATTTTGTGATTTGGCAGGATCTGAAAAACTTGACAAGGCACATTCA
GACACCTCCATGAAGCTGCCCAACGGTGAATGGAACCATCTAGCAATCAT
GGGGATGTCTACAAACTTCAGTTACACAGAACTCCAACGTTGTCTCAATG
ATATTGCAATACAAAAGAAACAGAACAGGAAATTCAACTTTCGGGCATAC
GTCACAGATCTCTTATTCTTGCTTTCTGGAAGCCTCGTCGGAAATGCGAT
CACAGCGCTCTTCGTTTGTGTGTCTCAAGCAGAATCTAATAAAGCTGAAT
CGAATTACGCGTTAGATTTCGGTGAAAAGTTCTCTAAACTGGATATGAAT
TGCCAGAAAGTAAAAGGACGTCTTTTAGAGGATCTCCAAAAAGAGTTATT
GAAATCAATCGATGATAATTGTCGACAGATAGATAGTGCTTCGACTTGGA
AAAACCGGTATACTATGATGAGAAAAGCTCAAGTTCGTGATTGTGAAcaa
atattgaatgttttgaagAACTTTAGTGAAGAAAAAATGGGTAGTGTGAA
ATCAATGAACTGAATGATGACAACACACGTTTGTAATAAGAATGACAGTT
CAAAGCAAAGGTTTGGTGTGGTTCGTATCAAACCTTTAGGTGCTGGTGGA
GGAGGGGTGGAAACAAGTTCCGCCACAGGAAAGTCAATCATAGACTTCTC
AAaggACCATGTTTCAGTTCGAGACCGCAAGAAATACAGTTATCCAAGCA
TGATTATCCCTCCTCGTATGAAACAAGATGAATTATTTGATAACTTCATG
CCAAAATGTATTGATGACTTCTTTCAAGGGTACAACGTGAACGTGATTGC
ATACGGACAGACAGGGACGGGAAAAACACACACTATGTTTGGACCACCTG
GTTGCATGAAACGTGCTGCCCGcGGAGAGTACAGTTACGAAACCCATCAA
ACTTATGGATTGTTCCCTCGTGGAATTTTGGAGATCTTTCGAAAAGTACA
TGAATGCAATACAACTGAATCACAATCATCATCATCGAATATTTACGCGT
TGACGTGCTCAGCTGTGGAACTTTGCCATATGGGAAATGAGGATATGTTT
AATAAGTCTGAGAAGAGAGATTATTCGTTTGCGAACGGCTCTGGTTCCCT
TGGCATCATCTTGAACAGAGACGAGAAACCACCAAGGTTGTATGGACAGA
ATGAATATGAAATCAAAACCTATGATGATATCTTAAGAGTATTTGCTGCA
ATCGCGTCACGAAACACGGAAGGCACGTTACTAAATGATACGTCATCACG
CTCACACTGTTTGGTCGCGCTGAAGTTGTGGCGATATGACGTCAGTACTA
AAATGGTGTTCAAAACACGATTTCAATTTTGTGATTTGGCAGGATCTGAA
AAACTTGACAAGGCACATTCAGACACCTCCATGAAGCTGCCCAACGGTGA
ATGGAACCATCTAGCAATCATGGGGATGTCTACAAACTTCAGTTACACAG
AACTCCAACGTTGTCTCAATGATATTGCAATACAAAAGAAACAGAACAGG
AAATTCAACTTTCGGGCATACGTCACAGATCTCTTATTCTTGCTTTCTGG
AAGCCTCGTCGGAAATGCGATCACAGCGCTCTTCGTTTGTGTGTCTCAAG
CAGAATCTAATAAAGCTGAATCGAATTACGCGTTAGATTTCGGTGAAAAG
TTCTCTAAACTGGATATGAATTGCCAGAAAGTAAAAGGACGTCTTTTAGA
GGATCTCCAAAAAGAGTTATTGAAATCAATCGATGATAATTGTCGACAGA
TAGATAGTGCTTCGACTTGGAAAAACCGGTATACTATGATGAGAAAAGCT
CAAGTTCGTGATTGTGAAcaaatattgaatgttttgaagAACTTTAGTGA
AGAAAAAATGGGTAGTGTGAAATCAATGAACTGAATGATGACAACACACG
TTTGTAATAAGAATGACAGTTCAAAGCAAAGGTTTGGTGTGGTTCGTATC
AAACCTTTAGGTGCTGGTGGAGGAGGGGTGGAAACAAGTTCCGCCACAGG
AAAGTCAATCATAGACTTCTCAAaggACCATGTTTCAGTTCGAGACCGCA
AGAAATACAGTTATCCAAGCATGATTATCCCTCCTCGTATGAAACAAGAT
GAATTATTTGATAACTTCATGCCAAAATGTATTGATGACTTCTTTCAAGG
GTACAACGTGAACGTGATTGCATACGGACAGACAGGGACGGGAAAAACAC
ACACTATGTTTGGACCACCTGGTTGCATGAAACGTGCTGCCCGcGGAGAG
TACAGTTACGAAACCCATCAAACTTATGGATTGTTCCCTCGTGGAATTTT
GGAGATCTTTCGAAAAGTACATGAATGCAATACAACTGAATCACAATCAT
CATCATCGAATATTTACGCGTTGACGTGCTCAGCTGTGGAACTTTGCCAT
ATGGGAAATGAGGATATGTTTAATAAGTCTGAGAAGAGAGATTATTCGTT
TGCGAACGGCTCTGGTTCCCTTGGCATCATCTTGAACAGAGACGAGAAAC
CACCAAGGTTGTATGGACAGAATGAATATGAAATCAAAACCTATGATGAT
ATCTTAAGAGTATTTGCTGCAATCGCGTCACGAAACACGGAAGGCACGTT
ACTAAATGATACGTCATCACGCTCACACTGTTTGGTCGCGCTGAAGTTGT
GGCGATATGACGTCAGTACTAAAATGGTGTTCAAAACACGATTTCAATTT
TGTGATTTGGCAGGATCTGAAAAACTTGACAAGGCACATTCAGACACCTC
CATGAAGCTGCCCAACGGTGAATGGAACCATCTAGCAATCATGGGGATGT
CTACAAACTTCAGTTACACAGAACTCCAACGTTGTCTCAATGATATTGCA
ATACAAAAGAAACAGAACAGGAAATTCAACTTTCGGGCATACGTCACAGA
TCTCTTATTCTTGCTTTCTGGAAGCCTCGTCGGAAATGCGATCACAGCGC
TCTTCGTTTGTGTGTCTCAAGCAGAATCTAATAAAGCTGAATCGAATTAC
GCGTTAGATTTCGGTGAAAAGTTCTCTAAACTGGATATGAATTGCCAGAA
AGTAAAAGGACGTCTTTTAGAGGATCTCCAAAAAGAGTTATTGAAATCAA
TCGATGATAATTGTCGACAGATAGATAGTGCTTCGACTTGGAAAAACCGG
TATACTATGATGAGAAAAGCTCAAGTTCGTGATTGTGAAcaaatattgaa
tgttttgaagAACTTTAGTGAAGAAAAAATGGGTAGTGTGAAATCAATGA
ACTGAATGATGACAACACACGTTTGTAATAAGAATGACAGTTCAAAGCAA
AGGTTTGGTGTGGTTCGTATCAAACCTTTAGGTGCTGGTGGAGGAGGGGT
GGAAACAAGTTCCGCCACAGGAAAGTCAATCATAGACTTCTCAAaggACC
ATGTTTCAGTTCGAGACCGCAAGAAATACAGTTATCCAAGCATGATTATC
CCTCCTCGTATGAAACAAGATGAATTATTTGATAACTTCATGCCAAAATG
TATTGATGACTTCTTTCAAGGGTACAACGTGAACGTGATTGCATACGGAC
AGACAGGGACGGGAAAAACACACACTATGTTTGGACCACCTGGTTGCATG
AAACGTGCTGCCCGcGGAGAGTACAGTTACGAAACCCATCAAACTTATGG
ATTGTTCCCTCGTGGAATTTTGGAGATCTTTCGAAAAGTACATGAATGCA
ATACAACTGAATCACAATCATCATCATCGAATATTTACGCGTTGACGTGC
TCAGCTGTGGAACTTTGCCATATGGGAAATGAGGATATGTTTAATAAGTC
TGAGAAGAGAGATTATTCGTTTGCGAACGGCTCTGGTTCCCTTGGCATCA
TCTTGAACAGAGACGAGAAACCACCAAGGTTGTATGGACAGAATGAATAT
GAAATCAAAACCTATGATGATATCTTAAGAGTATTTGCTGCAATCGCGTC
ACGAAACACGGAAGGCACGTTACTAAATGATACGTCATCACGCTCACACT
GTTTGGTCGCGCTGAAGTTGTGGCGATATGACGTCAGTACTAAAATGGTG
TTCAAAACACGATTTCAATTTTGTGATTTGGCAGGATCTGAAAAACTTGA
CAAGGCACATTCAGACACCTCCATGAAGCTGCCCAACGGTGAATGGAACC
ATCTAGCAATCATGGGGATGTCTACAAACTTCAGTTACACAGAACTCCAA
CGTTGTCTCAATGATATTGCAATACAAAAGAAACAGAACAGGAAATTCAA
CTTTCGGGCATACGTCACAGATCTCTTATTCTTGCTTTCTGGAAGCCTCG
TCGGAAATGCGATCACAGCGCTCTTCGTTTGTGTGTCTCAAGCAGAATCT
AATAAAGCTGAATCGAATTACGCGTTAGATTTCGGTGAAAAGTTCTCTAA
ACTGGATATGAATTGCCAGAAAGTAAAAGGACGTCTTTTAGAGGATCTCC
AAAAAGAGTTATTGAAATCAATCGATGATAATTGTCGACAGATAGATAGT
GCTTCGACTTGGAAAAACCGGTATACTATGATGAGAAAAGCTCAAGTTCG
TGATTGTGAAcaaatattgaatgttttgaagAACTTTAGTGAAGAAAAAA
TGGGTAGTGTGAAATCAATGAACTGAATGATGACAACACACGTTTGTAAT
AAGAATGACAGTTCAAAGCAAAGGTTTGGTGTGGTTCGTATCAAACCTTT
AGGTGCTGGTGGAGGAGGGGTGGAAACAAGTTCCGCCACAGGAAAGTCAA
TCATAGACTTCTCAAaggACCATGTTTCAGTTCGAGACCGCAAGAAATAC
AGTTATCCAAGCATGATTATCCCTCCTCGTATGAAACAAGATGAATTATT
TGATAACTTCATGCCAAAATGTATTGATGACTTCTTTCAAGGGTACAACG
TGAACGTGATTGCATACGGACAGACAGGGACGGGAAAAACACACACTATG
TTTGGACCACCTGGTTGCATGAAACGTGCTGCCCGcGGAGAGTACAGTTA
CGAAACCCATCAAACTTATGGATTGTTCCCTCGTGGAATTTTGGAGATCT
TTCGAAAAGTACATGAATGCAATACAACTGAATCACAATCATCATCATCG
AATATTTACGCGTTGACGTGCTCAGCTGTGGAACTTTGCCATATGGGAAA
TGAGGATATGTTTAATAAGTCTGAGAAGAGAGATTATTCGTTTGCGAACG
GCTCTGGTTCCCTTGGCATCATCTTGAACAGAGACGAGAAACCACCAAGG
TTGTATGGACAGAATGAATATGAAATCAAAACCTATGATGATATCTTAAG
AGTATTTGCTGCAATCGCGTCACGAAACACGGAAGGCACGTTACTAAATG
ATACGTCATCACGCTCACACTGTTTGGTCGCGCTGAAGTTGTGGCGATAT
GACGTCAGTACTAAAATGGTGTTCAAAACACGATTTCAATTTTGTGATTT
GGCAGGATCTGAAAAACTTGACAAGGCACATTCAGACACCTCCATGAAGC
TGCCCAACGGTGAATGGAACCATCTAGCAATCATGGGGATGTCTACAAAC
TTCAGTTACACAGAACTCCAACGTTGTCTCAATGATATTGCAATACAAAA
GAAACAGAACAGGAAATTCAACTTTCGGGCATACGTCACAGATCTCTTAT
TCTTGCTTTCTGGAAGCCTCGTCGGAAATGCGATCACAGCGCTCTTCGTT
TGTGTGTCTCAAGCAGAATCTAATAAAGCTGAATCGAATTACGCGTTAGA
TTTCGGTGAAAAGTTCTCTAAACTGGATATGAATTGCCAGAAAGTAAAAG
GACGTCTTTTAGAGGATCTCCAAAAAGAGTTATTGAAATCAATCGATGAT
AATTGTCGACAGATAGATAGTGCTTCGACTTGGAAAAACCGGTATACTAT
GATGAGAAAAGCTCAAGTTCGTGATTGTGAAcaaatattgaatgttttga
agAACTTTAGTGAAGAAAAAATGGGTAGTGTGAAATCAATGAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032560XLOC_032560Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051382-proteinTCONS_00051382-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051382-exon-scaffold_201-1491911889:332236..332599TCONS_00051382-exon-scaffold_201-1491911889:332236..332599Clytia hemisphaericaexon
TCONS_00051382-exon-scaffold_201-1510915933:332236..332599TCONS_00051382-exon-scaffold_201-1510915933:332236..332599Clytia hemisphaericaexon
TCONS_00051382-exon-scaffold_201-1575043694:332236..332599TCONS_00051382-exon-scaffold_201-1575043694:332236..332599Clytia hemisphaericaexon
TCONS_00051382-exon-scaffold_201-1491911889:333687..333810TCONS_00051382-exon-scaffold_201-1491911889:333687..333810Clytia hemisphaericaexon
TCONS_00051382-exon-scaffold_201-1510915933:333687..333810TCONS_00051382-exon-scaffold_201-1510915933:333687..333810Clytia hemisphaericaexon
TCONS_00051382-exon-scaffold_201-1575043694:333687..333810TCONS_00051382-exon-scaffold_201-1575043694:333687..333810Clytia hemisphaericaexon
TCONS_00051382-exon-scaffold_201-1491911889:333976..334069TCONS_00051382-exon-scaffold_201-1491911889:333976..334069Clytia hemisphaericaexon
TCONS_00051382-exon-scaffold_201-1510915933:333976..334069TCONS_00051382-exon-scaffold_201-1510915933:333976..334069Clytia hemisphaericaexon
TCONS_00051382-exon-scaffold_201-1575043694:333976..334069TCONS_00051382-exon-scaffold_201-1575043694:333976..334069Clytia hemisphaericaexon
TCONS_00051382-exon-scaffold_201-1491911889:334790..334973TCONS_00051382-exon-scaffold_201-1491911889:334790..334973Clytia hemisphaericaexon
TCONS_00051382-exon-scaffold_201-1510915933:334790..334973TCONS_00051382-exon-scaffold_201-1510915933:334790..334973Clytia hemisphaericaexon
TCONS_00051382-exon-scaffold_201-1575043694:334790..334973TCONS_00051382-exon-scaffold_201-1575043694:334790..334973Clytia hemisphaericaexon
TCONS_00051382-exon-scaffold_201-1491911889:336025..336155TCONS_00051382-exon-scaffold_201-1491911889:336025..336155Clytia hemisphaericaexon
TCONS_00051382-exon-scaffold_201-1510915933:336025..336155TCONS_00051382-exon-scaffold_201-1510915933:336025..336155Clytia hemisphaericaexon
TCONS_00051382-exon-scaffold_201-1575043694:336025..336155TCONS_00051382-exon-scaffold_201-1575043694:336025..336155Clytia hemisphaericaexon
TCONS_00051382-exon-scaffold_201-1491911889:336778..336952TCONS_00051382-exon-scaffold_201-1491911889:336778..336952Clytia hemisphaericaexon
TCONS_00051382-exon-scaffold_201-1510915933:336778..336952TCONS_00051382-exon-scaffold_201-1510915933:336778..336952Clytia hemisphaericaexon
TCONS_00051382-exon-scaffold_201-1575043694:336778..336952TCONS_00051382-exon-scaffold_201-1575043694:336778..336952Clytia hemisphaericaexon
TCONS_00051382-exon-scaffold_201-1491911889:343188..343922TCONS_00051382-exon-scaffold_201-1491911889:343188..343922Clytia hemisphaericaexon
TCONS_00051382-exon-scaffold_201-1510915933:343188..343922TCONS_00051382-exon-scaffold_201-1510915933:343188..343922Clytia hemisphaericaexon
TCONS_00051382-exon-scaffold_201-1575043694:343188..343922TCONS_00051382-exon-scaffold_201-1575043694:343188..343922Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_201supercontigscaffold_201:332236..343922 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.96524	2.16858	1.33615	0.806578	17.8578	13.5833	12.0176	13.6372	6.68343	9.75681	8.25055	4.47761	4.70961	4.59752	4.26231	4.78987	6.06923	6.4522	5.04359	4.56876	4.79268	5.5103	5.09958	6.20062	8.66739	9.22824	3.68979	3.40566	4.82174	4.08402
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001752Kinesin_motor_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003777microtubule motor activity
GO:0008017microtubule binding
Vocabulary: Biological Process
TermDefinition
GO:0007018microtubule-based movement
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007018 microtubule-based movement
molecular_function GO:0005524 ATP binding
molecular_function GO:0008017 microtubule binding
molecular_function GO:0003777 microtubule motor activity
Blast
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BLAST of TCONS_00051382 vs. Swiss-Prot (Human)
Match: KIFC3 (Kinesin-like protein KIFC3 OS=Homo sapiens GN=KIFC3 PE=1 SV=4)

HSP 1 Score: 110.538 bits (275), Expect = 4.295e-25
Identity = 103/375 (27.47%), Postives = 170/375 (45.33%), Query Frame = 2 
Query:  278 VVRIKPLG-AGGGGVETSSATGKSIIDFSKDHVSVRDRKKYSYPSMIIPPRMKQDELFDN---FMPKCIDDFFQGYNVNVIAYGQTGTGKTHTMFGPPGCMKRAARGEYSYETHQTYGLFPRGILEIFRKVHECNTTESQSSSSNIYALTCSAVELCHMGNEDMFNKSEKRDYSF---ANGSGSLGIILNRDEKPPRLYGQNEYEIKTYDDILRVFA-AIASRNTEGTLLNDTSSRSHCLVALKLWRYDVSTKMVFKTRFQFCDLAGSEKLDKAHSDTSMKLPNGEWNHLAIMGMSTNFSYTELQRCLNDIAIQKKQNRKFNFRAYVTDLLFLLSGSLVGNAITALFVCVSQAESNKAESNYALDFGEKFSKLDM 1378
            + R++P+    G G E ++A      D S  H+  + +        +  P+  Q ++F      +  CID    G+NV + AYGQTG GKT+TM G                T +  G+  R +  +F +V E        +S   Y +T SA E+ +    D+  K  +         +GSG L +            G  E+++++ DDI +VF     +R TE T LN+ SSRSH L+ + +   D ST +    +    DLAGSE++ K+ ++ S      E  H+       N S +     L D+ I   ++R+ +     + L +LL  SL G++ T + V VS  E N +E+ Y+L F E+   +++
Sbjct:  449 IARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQDVFQEVQALVTSCID----GFNVCIFAYGQTGAGKTYTMEG----------------TAENPGINQRALQLLFSEVQE-------KASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYV-----------PGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGSRLR---EAQHI-------NKSLS----ALGDV-IAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVEL 770
The following BLAST results are available for this feature:
BLAST of TCONS_00051382 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KIFC34.295e-2527.47Kinesin-like protein KIFC3 OS=Homo sapiens GN=KIFC... [more]
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