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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051377 ID=TCONS_00051377|Name=TCONS_00051377|organism=Clytia hemisphaerica|type=transcript|length=347bp
CGCTCAACGAAAAACACGTGGTGGTTTTTGGTACTCAAAATGCGGTGACT
TTTTTCCTAATGGTATTTACTATGAAGAAACTGATTCGTTTAAACCTGAC
CCTTATTTGTATCATGGCATTAGATATACGAAATGGAACCGTCTTTATAC
TTTGAAATCAGTTGAAAtgatgatcaaaagaaaagagTAGCGTATGACTT
GGGTAGCTTGAAGCCCGGggccacttatagctttttgTTAGTCTGATGGC
GTTGATAAGCGGCCGGTGTAGTTGGACCGATTcgattttttggctttgct
tgaggtggcAGCAAATCCATAGtactagatccagtccctttttggag Run BLAST on NCBI transcript from alignment at scaffold_201:151459..155656+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051377 ID=TCONS_00051377|Name=TCONS_00051377|organism=Clytia hemisphaerica|type=transcript|length=4198bp|location=Sequence derived from alignment at scaffold_201:151459..155656+ (Clytia hemisphaerica)
CGCTCAACGAAAAACACGTGGTGGTTTTTGGTACGACAATTGCGGTAACT
TTTTTCCTAATGGTGTTTACTATGAAGAAAGTGATTCGTTTAAACCTGAC
CCTTATTTGTATCATGGCATTAGATATGCAAATTGGAACCGTCTTTATAC
TTTGAAATCAGTTGAAAtgatgatcaaaagaaaagagTAGCGCATGACTG
GGTGGCTTGAGAGAACTTTGGAATTCTGGACTTAACATGacgattttttt
ctaaacaactTTATTGTAGATCCTTTCGGAGAGGCAGAAATGCCTGCGAA
GGGGAAttcataaaatatttaaataaattaTTTGCAGAACCCCATATTCC
GATTTTTTAAAAGTTCCGTAACTTAAGTAAAAGCGGCCATTAtatggaaa
aattcaaatttgtaCAAACGATTCCTTATGCAAATccaacgtttgcttcc
ataatttTAAGAAACCTCGACTTTTCATCGACAAACTTGATCGAGAAATA
AAACTGATGGCTCAGCAAAGGTCTGGTTGCCAAGGGAgaagggggtactt
aggcaaacggagggtacggtatgttcCACCCTTAAGGGCacattttttgg
atttccaaagtcccactaaggTCGGGGAAAtcacaaaatcaaatttcagt
cccactaagggtcggataaataggaaaatttcatctttttacCCCTgtaa
agatcgaaatttggtcaaaattggtcatatTTGTCCCGATAAGGGTcgta
attcaaaaattttttctttgttttctctatTTTAGTCCCATTAAGGGTCC
AAGgtggtcgaaagtcgggcggcaccccccccccccNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NcccccccccccccccggcagctcgcaaccctagtacccccgggtaCTGA
TGagtctcaaaaaaaaaacttttatcatGAACAGCGtaaataaacatatt
tttataagtcttcaaaacaatggaaatggaaagaatagtataatattttg
tagtgaggattggtttaatTGGCTGTTTTCAGTAGGGGAAAAAATTGAAG
GCTAATTTCCCATGCTACCAGGGACGATAATTTGGCCAATTTGTCAGTGA
GAGGGGGTGTTTAATTTATGACCAAAAActctcaatttttttcttgtaca
cgctttttttttttataagaataNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNgaataccgtaagaatatttttggatgattttcgcca
aaaagttaagaatatccatgatgaaatgaaaaacaccattcttataaaaa
aaaaagcgtgtagttgtAAATCTTTAATTAGCTTTCATCTCAACAACTTA
TTTTTCCCAAGCAGTTTAAATATTAGGCGAAATTTTCTACTTAAATTCGT
CTTGTTAATTATTCAATGACTTATTCATATAAGTTGTCATCGAGTTAGTT
GCATCAGCCATAACCATAACCCAGCAACTGGAAGAGAATAAAGTAAGCTG
ATAATGAAACAAGCattgaaatgaatttgaatttgtcaTTTGTTTCTCTC
Aataataaatctaaaattaagtttttaatttgtttttcttcttcattttc
gcaAGGAACATTTAATAAAGTTTCTTGATTTGACCAGTCTAGTTTTGAAG
AAAGTTCGTACACAAAAAAATGGTAAGTTTGAACTTGGACATTATCAGTC
AGAACCACTATatagaaatggcaactattgccttaacgggaaggtgaaaa
acttcccgaaatggaTAGAGTTTCCGAATCAGGAAGTTAACCAGTTATTC
CCGATCGGGAATGTGACCTCTGCGCTCTCCGGAAAAGGTCGTGGAAGGTA
AATAGCTGATGCctattgtaaaagagggtgaatAAATACCTTTCACCGGG
TAGTTAAGAAATCTACTGGGTAATcgcttcttaattctactttccccatt
cccaattaaaaacttccctatttggaaactttttctcgatcgaggagaaa
caaaaatttgctttgtttacaaaattatatttcccGTTTGGGAacgatga
aaagttcttgaccaaaacgggaaacaaaaaagtgatgaaattttcaatct
ggaaaaagtttccttttcgggttattttcaccttcccgtttgggaaatat
ttcccgttaaggcaatagttgccatttccatgtagtggttccgactgATT
ATTAAAATAAGATAATGTACTTTCGAAGTTTTGATCTGTTAAATTACTtc
caaaatttaatttattcacAAAAAGTGGCAATAATACTCTAACGCTTTCA
AgtctaaatttttttcaataatcttAACTACAATATAGAATCTCCATAAA
TAGAATACAAGTTTTAACTAGGAGTGCATCAGCTTTTGAGGAGCTGGTAA
CTAAAATACAAGGTTAAAACGATAAGATATTTCATCATATTTCCAGGATg
gaaacatcatattttcaaaatatttctaaattttggaaatatcatatttc
taaAAGTTGGAAAtactttgaaaatatgatatttaaaTGAATTACATATA
AtacaaatatataaaatatagaaaagtcatatttacATATTTTTCGCACA
GTGCTGCTCTTCTGTACTTGCATTCTTCCTTTTATAAAATTCCAGGAAAA
TATTGGATCAAAGATCTTTTACTCGAGTTTGATTCTCATTGCTGTTGGGT
CAGTTTCAACCAAAAATCTCATCCTCGTTGGCAAGAATCAAAAAACATTG
TTAACGCATTATACTGAATTTCACACACccaaaatccaacattgtttCTC
GAAGTGTCATTACGATAAATCATGTTACTCTTTGGAGGTTGTACAGACTA
CATTATACCATTGCAAGTTCCATAACCAGTTCATTAAGCGATCAAACCGA
ACAACAGAATCGAACACAAATATCTACTCAGAGATACGAAGTTGTGACGA
TCTCTTCGATATTGGTATAAGGAATGCAGGTGCttatgaaatgaatttta
tgggTGAAGGCAAAAAAATGATCCGATGTTATTTTGATGAAGATGGTGGC
TGGCTAGTGTTTCAACGAAAAGTTGATGCTTCAGTGAATTTCAACATTGG
ATGGGATTTCTATAAAAATGGTTTTGGTGACCCAAGAGGTTAGTTTTGTA
CTTTTCTCAcgactttctttttttcaaagttcagacagacagacagacag
acagaccaACTATGCTAATAAATAAACTGGTTGTATTCTTTCTGTTAGGG
AGCTTCTGGCTGGGTAACGATCTGATTCACGAAGTGACCAGCCAAGCACA
ACATCAAATCAGAATCGTTCTGACCACTTTTACTGGAGGTGTTAGTATTT
CAAAATATGATCACTTCGAAGTCGCAAGTGAGGCAATGAAATATCAGCTA
ACAGCAACTAATTTCAGTCAGGGGTTCGATTTATTCAAAAGCTGCGATGG
TATGTTTTTCAGTACAACAGATCGCGACAATGATATAATTGCTAAAAATT
GCGCTAAATTAAAAACACGAGGTGGTTTTTGGTACTCAAAATGCGGTGAC
TTTTTTCCTAATGGTATTTACTATGAAGAAACTGATTCGTTTAAACCTGA
CCCTTATTTGTATCATGGCATTAGATATACGAAATGGAACCGTCTTTATA
CTTTGAAATCAGTTGAAAtgatgatcaaaagaaaagagTAGCGTATGACT
TGGGTAGCTTGAAGCCCGGggccacttatagctttttgTTAGTCTGATGG
CGTTGATAAGCGGCCGGTGTAGTTGGACCGATTcgattttttggctttgc
ttgaggtggcAGCAAATCCATAGtactagatccagtccctttttggag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051377-exon-scaffold_201-1491911889:151459..151478 | TCONS_00051377-exon-scaffold_201-1491911889:151459..151478 | Clytia hemisphaerica | exon |
| TCONS_00051377-exon-scaffold_201-1510915933:151459..151478 | TCONS_00051377-exon-scaffold_201-1510915933:151459..151478 | Clytia hemisphaerica | exon |
| TCONS_00051377-exon-scaffold_201-1575043694:151459..151478 | TCONS_00051377-exon-scaffold_201-1575043694:151459..151478 | Clytia hemisphaerica | exon |
| TCONS_00051377-exon-scaffold_201-1491911889:155330..155656 | TCONS_00051377-exon-scaffold_201-1491911889:155330..155656 | Clytia hemisphaerica | exon |
| TCONS_00051377-exon-scaffold_201-1510915933:155330..155656 | TCONS_00051377-exon-scaffold_201-1510915933:155330..155656 | Clytia hemisphaerica | exon |
| TCONS_00051377-exon-scaffold_201-1575043694:155330..155656 | TCONS_00051377-exon-scaffold_201-1575043694:155330..155656 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_201 | supercontig | scaffold_201:151459..155656 + |
Blast
The following BLAST results are available for this feature:
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