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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051375 ID=TCONS_00051375|Name=TCONS_00051375|organism=Clytia hemisphaerica|type=transcript|length=716bp
caggaaaccATTGAATCAAAGATCTTCTACTCAAGTTTGATTCTCATTGC
TGTTGGGTCAGTTTCAACCAAAAATCTCATCCTCGTTGGCAAgaatcaaa
aaacatttttaacgcATTATACTGAATTTCACACACccaaaatccaacat
tgtttCTCAAAGTGTCATTACGATAAATCATGCTACTCTTTGGAGGTTGT
ACAGACTACATTATACCATTGCAAGTTCCATAACCAGTTCATTAAGCGAT
CAAACCGAACAACAGAATCGAACACAAATATCTACTCAGAGATACGAAGT
TGTGACGATCTCTTCGATATTGGTATAAGGAATGCAGGTGCttatgaaat
gaattttatgggTGAAGGCAAAAAAGTGATCCGATGTTATTTTGATGAAG
ATGGTGGCTGGCTAGTGTTTCAACGAAGAGTTGATGCTTCAGTGAATTTC
AACATTGGATGGGATTTCTACAAAAATGGTTTTGGTGACCCAAGAGGGAG
CTTCTGGCTGGGTAACGATCTGATTCACGAAGTGACCAGCCAAGCACAAC
ATCAAATCAGAATCGTTCTGACCACTTTTACTGGAGGTGTTAGTATTTCA
AAATATGATCACTTCGAAGTCGCAAGTGAGGCAATGAAATATCAGCTAAC
AGCAACTAATTTCAGTCAGGGGTTCGATTTATTCAAAAGCTGCGATGGTA
TGTTTTTCAGTACAAC Run BLAST on NCBI protein sequence of TCONS_00051375-protein >TCONS_00051375-protein ID=TCONS_00051375-protein|Name=TCONS_00051375-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
QETIESKIFYSSLILIAVGSVSTKNLILVGKNQKTFLTHYTEFHTPKIQH
CFSKCHYDKSCYSLEVVQTTLYHCKFHNQFIKRSNRTTESNTNIYSEIRS
CDDLFDIGIRNAGAYEMNFMGEGKKVIRCYFDEDGGWLVFQRRVDASVNF
NIGWDFYKNGFGDPRGSFWLGNDLIHEVTSQAQHQIRIVLTTFTGGVSIS
KYDHFEVASEAMKYQLTATNFSQGFDLFKSCDGMFFST Run BLAST on NCBI transcript from alignment at scaffold_201:150399..155276+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051375 ID=TCONS_00051375|Name=TCONS_00051375|organism=Clytia hemisphaerica|type=transcript|length=4878bp|location=Sequence derived from alignment at scaffold_201:150399..155276+ (Clytia hemisphaerica)
caggaaaccATTGAATCAAAGATCTTCTACTCAAGTTTGATTCTCATTGC
TGTTGGGTCAGTTTCAACCAAAAATCTCATCCTCGTTGGCAAgaatcaaa
aaacatttttaacgcATTATACTGAATTTCACACACccaaaatccaacat
tgtttCTCAAAGTGTCATTACGATAAATCATGCTACTCTTTGGAGGTTGT
ACAGACTACATTATACCATTGCAAGTTCCATAACCAGTTCATTAAGCGAT
CAAACCGAACAACAGAATCGAACACAAATATCTACTCAGAGATACGAAGT
TGTGACGATCTCTTCGATATTGGTATAAGGAATGCAGGTGCttatgaaat
gaattttatgggTGAAGGCAAAAAAGTGATCCGATGTTATTTTGATGAAG
ATGGTGGCTGGCTAGTGTTTCAACGAAGAGTTGATGCTTCAGTGAATTTC
AACATTGGATGGGATTTCTACAAAAATGGTTTTGGTGACCCAAGAGGTTG
GTTTTGTACTTTTCTCATgcctttctttttttcaaagtcCGCCCAAAATT
GGCTGtataacagacggacggacggacggacagacagacggacagacgga
cagacggacagacggacagaTCGGACAGATCGGACAGATCGGACAGATCG
GACAGATCGggcagacagacagacagacagacagacagacagacagacag
acagacagacagacagacagacagacagacagacagacagacagacagac
agacagaaatACCAACTATGCTAATAAATAAACTGTTTGTTTCTATTCTG
TTAGGGAGCTTCTGGCTTGGTAACGATCTGATTCACGAAGTGACCAGTCA
AGCACAACATCAAATCAGAATCGTTCTGACCAATTTTACTGGAGGTGTTA
GTATTTCAAAATATGATCACTTCGAAGTCGCAAATGAGGCAATGAAATAT
CAGCTAACAGCAACGGGTTTCACTCAGGGGTTCAAGTTATTCAAACTCTG
CGATGGTATGTTTTTTACTACAACAGATCGCGACAATGATATAAAGCCTA
CCGGAAATTGCGCTCAACGAAAAACACGTGGTGGTTTTTGGTACGACAAT
TGCGGTAACTTTTTTCCTAATGGTGTTTACTATGAAGAAAGTGATTCGTT
TAAACCTGACCCTTATTTGTATCATGGCATTAGATATGCAAATTGGAACC
GTCTTTATACTTTGAAATCAGTTGAAAtgatgatcaaaagaaaagagTAG
CGCATGACTGGGTGGCTTGAGAGAACTTTGGAATTCTGGACTTAACATGa
cgatttttttctaaacaactTTATTGTAGATCCTTTCGGAGAGGCAGAAA
TGCCTGCGAAGGGGAAttcataaaatatttaaataaattaTTTGCAGAAC
CCCATATTCCGATTTTTTAAAAGTTCCGTAACTTAAGTAAAAGCGGCCAT
TAtatggaaaaattcaaatttgtaCAAACGATTCCTTATGCAAATccaac
gtttgcttccataatttTAAGAAACCTCGACTTTTCATCGACAAACTTGA
TCGAGAAATAAAACTGATGGCTCAGCAAAGGTCTGGTTGCCAAGGGAgaa
gggggtacttaggcaaacggagggtacggtatgttcCACCCTTAAGGGCa
cattttttggatttccaaagtcccactaaggTCGGGGAAAtcacaaaatc
aaatttcagtcccactaagggtcggataaataggaaaatttcatcttttt
acCCCTgtaaagatcgaaatttggtcaaaattggtcatatTTGTCCCGAT
AAGGGTcgtaattcaaaaattttttctttgttttctctatTTTAGTCCCA
TTAAGGGTCCAAGgtggtcgaaagtcgggcggcaccccccccccccNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNcccccccccccccccggcagctcgcaaccctagtacccc
cgggtaCTGATGagtctcaaaaaaaaaacttttatcatGAACAGCGtaaa
taaacatatttttataagtcttcaaaacaatggaaatggaaagaatagta
taatattttgtagtgaggattggtttaatTGGCTGTTTTCAGTAGGGGAA
AAAATTGAAGGCTAATTTCCCATGCTACCAGGGACGATAATTTGGCCAAT
TTGTCAGTGAGAGGGGGTGTTTAATTTATGACCAAAAActctcaattttt
ttcttgtacacgctttttttttttataagaataNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNgaataccgtaagaatatttttggatg
attttcgccaaaaagttaagaatatccatgatgaaatgaaaaacaccatt
cttataaaaaaaaaagcgtgtagttgtAAATCTTTAATTAGCTTTCATCT
CAACAACTTATTTTTCCCAAGCAGTTTAAATATTAGGCGAAATTTTCTAC
TTAAATTCGTCTTGTTAATTATTCAATGACTTATTCATATAAGTTGTCAT
CGAGTTAGTTGCATCAGCCATAACCATAACCCAGCAACTGGAAGAGAATA
AAGTAAGCTGATAATGAAACAAGCattgaaatgaatttgaatttgtcaTT
TGTTTCTCTCAataataaatctaaaattaagtttttaatttgtttttctt
cttcattttcgcaAGGAACATTTAATAAAGTTTCTTGATTTGACCAGTCT
AGTTTTGAAGAAAGTTCGTACACAAAAAAATGGTAAGTTTGAACTTGGAC
ATTATCAGTCAGAACCACTATatagaaatggcaactattgccttaacggg
aaggtgaaaaacttcccgaaatggaTAGAGTTTCCGAATCAGGAAGTTAA
CCAGTTATTCCCGATCGGGAATGTGACCTCTGCGCTCTCCGGAAAAGGTC
GTGGAAGGTAAATAGCTGATGCctattgtaaaagagggtgaatAAATACC
TTTCACCGGGTAGTTAAGAAATCTACTGGGTAATcgcttcttaattctac
tttccccattcccaattaaaaacttccctatttggaaactttttctcgat
cgaggagaaacaaaaatttgctttgtttacaaaattatatttcccGTTTG
GGAacgatgaaaagttcttgaccaaaacgggaaacaaaaaagtgatgaaa
ttttcaatctggaaaaagtttccttttcgggttattttcaccttcccgtt
tgggaaatatttcccgttaaggcaatagttgccatttccatgtagtggtt
ccgactgATTATTAAAATAAGATAATGTACTTTCGAAGTTTTGATCTGTT
AAATTACTtccaaaatttaatttattcacAAAAAGTGGCAATAATACTCT
AACGCTTTCAAgtctaaatttttttcaataatcttAACTACAATATAGAA
TCTCCATAAATAGAATACAAGTTTTAACTAGGAGTGCATCAGCTTTTGAG
GAGCTGGTAACTAAAATACAAGGTTAAAACGATAAGATATTTCATCATAT
TTCCAGGATggaaacatcatattttcaaaatatttctaaattttggaaat
atcatatttctaaAAGTTGGAAAtactttgaaaatatgatatttaaaTGA
ATTACATATAAtacaaatatataaaatatagaaaagtcatatttacATAT
TTTTCGCACAGTGCTGCTCTTCTGTACTTGCATTCTTCCTTTTATAAAAT
TCCAGGAAAATATTGGATCAAAGATCTTTTACTCGAGTTTGATTCTCATT
GCTGTTGGGTCAGTTTCAACCAAAAATCTCATCCTCGTTGGCAAGAATCA
AAAAACATTGTTAACGCATTATACTGAATTTCACACACccaaaatccaac
attgtttCTCGAAGTGTCATTACGATAAATCATGTTACTCTTTGGAGGTT
GTACAGACTACATTATACCATTGCAAGTTCCATAACCAGTTCATTAAGCG
ATCAAACCGAACAACAGAATCGAACACAAATATCTACTCAGAGATACGAA
GTTGTGACGATCTCTTCGATATTGGTATAAGGAATGCAGGTGCttatgaa
atgaattttatgggTGAAGGCAAAAAAATGATCCGATGTTATTTTGATGA
AGATGGTGGCTGGCTAGTGTTTCAACGAAAAGTTGATGCTTCAGTGAATT
TCAACATTGGATGGGATTTCTATAAAAATGGTTTTGGTGACCCAAGAGGT
TAGTTTTGTACTTTTCTCAcgactttctttttttcaaagttcagacagac
agacagacagacagaccaACTATGCTAATAAATAAACTGGTTGTATTCTT
TCTGTTAGGGAGCTTCTGGCTGGGTAACGATCTGATTCACGAAGTGACCA
GCCAAGCACAACATCAAATCAGAATCGTTCTGACCACTTTTACTGGAGGT
GTTAGTATTTCAAAATATGATCACTTCGAAGTCGCAAGTGAGGCAATGAA
ATATCAGCTAACAGCAACTAATTTCAGTCAGGGGTTCGATTTATTCAAAA
GCTGCGATGGTATGTTTTTCAGTACAAC Coding sequence (CDS) from alignment at scaffold_201:150399..155276+ >TCONS_00051375 ID=TCONS_00051375|Name=TCONS_00051375|organism=Clytia hemisphaerica|type=CDS|length=1428bp|location=Sequence derived from alignment at scaffold_201:150399..155276+ (Clytia hemisphaerica)
caggaaaccATTGAATCAAAGATCTTCTACTCAAGTTTGATTCTCATTGC
TGTTGGGTCAGTTTCAACCAAAAATCTCATCCTCGTTGGCAAgaatcaaa
aaacatttttaacgcATTATACTGAATTTCACACACccaaaatccaacat
tgtttCTCAAAGTGTCATTACGATAAATCATGCTACTCTTTGGAGGTTGT
ACAGACTACATTATACCATTGCAAGTTCCATAACCAGTTCATTAAGCGAT
CAAACCGAACAACAGAATCGAACACAAATATCTACTCAGAGATACGAAGT
TGTGACGATCTCTTCGATATTGGTATAAGGAATGCAGGTGCttatgaaat
gaattttatgggTGAAGGCAAAAAAGTGATCCGATGTTATTTTGATGAAG
ATGGTGGCTGGCTAGTGTTTCAACGAAGAGTTGATGCTTCAGTGAATTTC
AACATTGGATGGGATTTCTACAAAAATGGTTTTGGTGACCCAAGAGGGAG
CTTCTGGCTGGGTAACGATCTGATTCACGAAGTGACCAGCCAAGCACAAC
ATCAAATCAGAATCGTTCTGACCACTTTTACTGGAGGTGTTAGTATTTCA
AAATATGATCACTTCGAAGTCGCAAGTGAGGCAATGAAATATCAGCTAAC
AGCAACTAATTTCAGTCAGGGGTTCGATTTATTCAAAAGCTGCGATGGTA
TGTTTTTCAGTACAcaggaaaccATTGAATCAAAGATCTTCTACTCAAGT
TTGATTCTCATTGCTGTTGGGTCAGTTTCAACCAAAAATCTCATCCTCGT
TGGCAAgaatcaaaaaacatttttaacgcATTATACTGAATTTCACACAC
ccaaaatccaacattgtttCTCAAAGTGTCATTACGATAAATCATGCTAC
TCTTTGGAGGTTGTACAGACTACATTATACCATTGCAAGTTCCATAACCA
GTTCATTAAGCGATCAAACCGAACAACAGAATCGAACACAAATATCTACT
CAGAGATACGAAGTTGTGACGATCTCTTCGATATTGGTATAAGGAATGCA
GGTGCttatgaaatgaattttatgggTGAAGGCAAAAAAGTGATCCGATG
TTATTTTGATGAAGATGGTGGCTGGCTAGTGTTTCAACGAAGAGTTGATG
CTTCAGTGAATTTCAACATTGGATGGGATTTCTACAAAAATGGTTTTGGT
GACCCAAGAGGGAGCTTCTGGCTGGGTAACGATCTGATTCACGAAGTGAC
CAGCCAAGCACAACATCAAATCAGAATCGTTCTGACCACTTTTACTGGAG
GTGTTAGTATTTCAAAATATGATCACTTCGAAGTCGCAAGTGAGGCAATG
AAATATCAGCTAACAGCAACTAATTTCAGTCAGGGGTTCGATTTATTCAA
AAGCTGCGATGGTATGTTTTTCAGTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051375-exon-scaffold_201-1491911889:150399..150894 | TCONS_00051375-exon-scaffold_201-1491911889:150399..150894 | Clytia hemisphaerica | exon |
| TCONS_00051375-exon-scaffold_201-1510915933:150399..150894 | TCONS_00051375-exon-scaffold_201-1510915933:150399..150894 | Clytia hemisphaerica | exon |
| TCONS_00051375-exon-scaffold_201-1575043694:150399..150894 | TCONS_00051375-exon-scaffold_201-1575043694:150399..150894 | Clytia hemisphaerica | exon |
| TCONS_00051375-exon-scaffold_201-1491911889:155057..155276 | TCONS_00051375-exon-scaffold_201-1491911889:155057..155276 | Clytia hemisphaerica | exon |
| TCONS_00051375-exon-scaffold_201-1510915933:155057..155276 | TCONS_00051375-exon-scaffold_201-1510915933:155057..155276 | Clytia hemisphaerica | exon |
| TCONS_00051375-exon-scaffold_201-1575043694:155057..155276 | TCONS_00051375-exon-scaffold_201-1575043694:155057..155276 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_201 | supercontig | scaffold_201:150399..155276 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002181 | Fibrinogen_a/b/g_C_dom |
| IPR014716 | Fibrinogen_a/b/g_C_1 |
Blast
BLAST of TCONS_00051375 vs. Swiss-Prot (Human)
Match: ANGP1 (Angiopoietin-1 OS=Homo sapiens GN=ANGPT1 PE=1 SV=2) HSP 1 Score: 103.99 bits (258), Expect = 2.103e-25 Identity = 52/121 (42.98%), Postives = 71/121 (58.68%), Query Frame = 1
Query: 295 RSCDDLFDIGIRNAGAYEM--NFMGEGKKVIRCYFDEDGG-WLVFQRRVDASVNFNIGWDFYKNGFGDPRGSFWLGNDLIHEVTSQAQHQIRIVLTTFTGGVSISKYDHFEVASEAMKYQL 648
R C D++ G +G Y + N M E KKV C D +GG W V Q R D S++F GW YK GFG+P G +WLGN+ I +TSQ Q+ +RI L + G + S+YD F + +E Y+L
Sbjct: 284 RDCADVYQAGFNKSGIYTIYINNMPEPKKVF-CNMDVNGGGWTVIQHREDGSLDFQRGWKEYKMGFGNPSGEYWLGNEFIFAITSQRQYMLRIELMDWEGNRAYSQYDRFHIGNEKQNYRL 403
The following BLAST results are available for this feature:
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