TCONS_00051371 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051371
Unique NameTCONS_00051371
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length615

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051371 ID=TCONS_00051371|Name=TCONS_00051371|organism=Clytia hemisphaerica|type=transcript|length=615bp
ATCATATTGGTCAACGAAAACTGAATGTGATTGGTGAAGGCACAACAGCT
GTTTCACCACGTGAGAAGTTCTCACAGCTCACTGGTGAAAGTAAACAGCC
CAAGAAAAAGAACACACTCGTTAAAAGTTTCTCCATTGGAGATATACATA
GGTATGctcagaccatgttcagacgttactgttccgttccCAAACGGTTC
CGAAataagtgtgaacgtcaaaattcgaaacgtcaaaaaagaagacgCAA
AGCAAGCAAAACAAAGAAAAACAATTCGAAACGGTTTTGCTCCACTTTTT
TCATCGGAACGAAACTGCTCCGTTGCTCCCAAACGTTCCGAAACCACTTC
TTGATATGCGTAAGTCAAGATGACGTCATATTTTTTAACggaagcaccca
aaaaagccggtttttgacctctgtgtttctatttttagtaacagagagag
gtcaaatcccggctttttagggtgtttccgctagaaaaatgaattacgca
tatcaagaatatgaacacactcgatccgtaacgaaaatcataccggagtg
AAATGGAACGGTAAATGTGTGAATATGGTCTTGAGGTCTTGAGGGATAAC
TTAACTATCCAAATT
Run BLAST on NCBI

transcript from alignment at scaffold_201:91913..92527+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051371 ID=TCONS_00051371|Name=TCONS_00051371|organism=Clytia hemisphaerica|type=transcript|length=615bp|location=Sequence derived from alignment at scaffold_201:91913..92527+ (Clytia hemisphaerica)
ATCATATTGGTCAACGAAAACTGAATGTGATTGGTGAAGGCACAACAGCT
GTTTCACCACGTGAGAAGTTCTCACAGCTCACTGGTGAAAGTAAACAGCC
CAAGAAAAAGAACACACTCGTTAAAAGTTTCTCCATTGGAGATATACATA
GGTATGctcagaccatgttcagacgttactgttccgttccCAAACGGTTC
CGAAataagtgtgaacgtcaaaattcgaaacgtcaaaaaagaagacgCAA
AGCAAGCAAAACAAAGAAAAACAATTCGAAACGGTTTTGCTCCACTTTTT
TCATCGGAACGAAACTGCTCCGTTGCTCCCAAACGTTCCGAAACCACTTC
TTGATATGCGTAAGTCAAGATGACGTCATATTTTTTAACggaagcaccca
aaaaagccggtttttgacctctgtgtttctatttttagtaacagagagag
gtcaaatcccggctttttagggtgtttccgctagaaaaatgaattacgca
tatcaagaatatgaacacactcgatccgtaacgaaaatcataccggagtg
AAATGGAACGGTAAATGTGTGAATATGGTCTTGAGGTCTTGAGGGATAAC
TTAACTATCCAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032553XLOC_032553Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051371-exon-scaffold_201-1491911889:91913..92527TCONS_00051371-exon-scaffold_201-1491911889:91913..92527Clytia hemisphaericaexon
TCONS_00051371-exon-scaffold_201-1510915933:91913..92527TCONS_00051371-exon-scaffold_201-1510915933:91913..92527Clytia hemisphaericaexon
TCONS_00051371-exon-scaffold_201-1575043694:91913..92527TCONS_00051371-exon-scaffold_201-1575043694:91913..92527Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_201supercontigscaffold_201:91913..92527 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.10491	0	0.715956	1.33304	0.641155	0.198695	0.120333	0.117016	0.609279	1.42544	0.389206	0.649391	2.43246	1.40582	1.21557	1.05098	0.557293	0.885458	1.57256	2.61547	0.531779	0.509255	0.395654	0.325582	0	0.262219	0.459724	0.401083	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051371 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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