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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051367 ID=TCONS_00051367|Name=TCONS_00051367|organism=Clytia hemisphaerica|type=transcript|length=1884bpRun BLAST on NCBI protein sequence of TCONS_00051367-protein >TCONS_00051367-protein ID=TCONS_00051367-protein|Name=TCONS_00051367-protein|organism=Clytia hemisphaerica|type=polypeptide|length=311bp MFNFMNDMMNLASSYKTQYKCYSVSMLAGNERKDVEKGGKIILPPSALDVRun BLAST on NCBI transcript from alignment at scaffold_201:53019..70730+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051367 ID=TCONS_00051367|Name=TCONS_00051367|organism=Clytia hemisphaerica|type=transcript|length=17712bp|location=Sequence derived from alignment at scaffold_201:53019..70730+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_201:53019..70730+ >TCONS_00051367 ID=TCONS_00051367|Name=TCONS_00051367|organism=Clytia hemisphaerica|type=CDS|length=11232bp|location=Sequence derived from alignment at scaffold_201:53019..70730+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00051367 vs. Swiss-Prot (Human)
Match: UFD1 (Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Homo sapiens GN=UFD1 PE=1 SV=3) HSP 1 Score: 332.413 bits (851), Expect = 3.408e-108 Identity = 173/296 (58.45%), Postives = 211/296 (71.28%), Query Frame = 3
Query: 318 YKTQYKCYSVSMLAG-NERKDVEKGGKIILPPSALDVLTRLNIVYPMLFKLTNKRAKRNTHCGVLEFVADEGKAYIPHWMMQNLYLQEGDLVSIESASLPVATFARFQPQTVDFLDITNPKAVLESVLRYFACLTKGDVLAIKYNDKIYEILVLETKPSDAVSIIECDMQVDFATPVGYVPPERPTSSKAKEEEHQEPSLEGIPEQ--YIDRGSQNVFPGSGNRLDGKKRKNRESTDSNQQFKPTIIQSGIPDLNYQIGTLEFKRVTLKPANPSQDDQESS-FEAFGGDGQTLRKK 1193
+ TQY+C+SVSMLAG N+R DVEKGGKII+PPSALD L+RLNI YPMLFKLTNK + R THCGVLEFVADEG Y+PHWMMQNL L+EG LV +ES +L VAT+++FQPQ+ DFLDITNPKAVLE+ LR FACLT GDV+AI YN+KIYE+ V+ETKP AVSIIECDM VDF P+GY PER + +H+E S EG + Y F GSGNRLDGKK+ S KP I+ GIP+ +++G + F R + ++D+ F AF G+GQ+LRKK
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPER-------QVQHEE-STEGEADHSGYAGELGFRAFSGSGNRLDGKKKGVEPSPSP---IKPGDIKRGIPNYEFKLGKITFIRNSRPLVKKVEEDEAGGRFVAFSGEGQSLRKK 303 The following BLAST results are available for this feature:
BLAST of TCONS_00051367 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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