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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051364 ID=TCONS_00051364|Name=TCONS_00051364|organism=Clytia hemisphaerica|type=transcript|length=1937bp
GtcaaacgcaaaaaaatttgatgCGAATTTTCAGTGAAGAAAAATGGATC
ACAATCAAGAGTCGTCAGTCAGTAATGACCCTCGCCCAACGTTACTTGGT
CAATTGACGACAGCTTTCATGATCGATTGGTACATGTTCCCTGCCAAAAT
TACTTACTTTCTCGCAAATGGCATAGATGGCGCTTTCAAACCTTATGCAT
TATCCTTCCTTGTCGGCGTCGGATTGAACAAAGCAGAAGCAGGTCTGGTG
ACAGGTCTTCGTCTTCTTGGGATGACTTTTGCTGGTCCTTTATGGGGCTT
CATTACCGACAAACGACAAAATCATGTTCTGATTCTCATACTCATGGCCT
TAATGTCAATACTATGGGTAGGCGGTCAACCTTTGTTATCTATATGGATC
GGTGATCAATGGACAAACACTTGCCCTGCACCTTTGGAAACAAACACCAC
AAGCAGTGGATCAGCCACACTCAACGAGGCCAATTCGACTATTAACTTCC
GTTCCACTCGATTGATTATATTTCTAtttgttaatattttggctTCATGT
TTTGACGGGTGTATTATAACATTGGTGGATGCTGGTGTTGTAAAAAGAAT
ACGTGCATCCCCGACTCCAAAAGAATTTGGTTGGAACCGTATGTTTGGAA
CCTTTGGTTTCTCCGCTGGTTCATTCCTTTCTGGTCTTGTTTCTGACATG
TTTCCGTATACGGAACATGTGAATTGTTTCACTGGAGCTTATGTTGTTTT
GAGTTGTTTTTTATTGGGCTTGGTGGTAGTATGTCCATTCCTGTTCAAAT
TACCAGAAAATAAAGTGAATCCATATGGTCACGAGATGCGTCCGCCTGCG
CTGGACGTACAGCCGGAGGGTGGTTTTGATNCCTGTTCAAATTACCAGAA
AATAAAGTGAATCCATATGGTCACGAGATGCGTCCGCCTGCGCTGGACGT
ACAGCCGGAGGGTGGTTTTGATGATGTATTTTCAAACGAAGTGATAAAGC
CGGAAACCAATAAATCTCTAACAGGTTTACTattcaaaacattgaaaaac
gTTGAAATGATCATATTTCTTTCAACTGTTTTAATTGTAGGAACTCTTCA
AGGTGTCCTCATTAGTTTTACTACGTTACGAATCAAGGAACTGAATGGTC
CAACATCCTTGGCTGGTTTCGTTGTATCTATAGTCGCCCTATCGTCACTA
CCGTCTATGACACTTGCCTCaagattgataaatttttttaaaggctaTTG
GGGAACATTTTTCACATGCTGCACCATATATGCAATGTCTTTCATCACTA
TGGGTCATATTAAAAACCCGTGGCTGGCTATTCCGATTTGTACATTTGTT
GGATTTGGAGTGGGGCTAATGATTGTAACTCCAGTATTATACATCAAATC
AAACACAGACCCTAAAATTCATACAACAATGTTATCCATACGAACCACTA
CATTTTTCGGCTTTGGATATATAATTGCTAATATAGTTGGCGGACAGATC
GTTAGTCGTTATGGTGGTTCGCAATTATTTTTCAGTTCGGGTCTACTGGC
TGTTGGATGGAATTTTGTTCTATTGGTTGTGATTGGCGTTAAAGCTTTGA
GGAGAAATGAAAGAGAAAATGTGACCTAtggacaaactttttgaaaaccg
TCTCGCTACTATGTACAGGGTGATCTAATAAACAtgtctgtttttctttt
tataacccTAAGTAGTATAGGATAAATAGGAAGCGtgatttctttaattt
aaagTGGGAAATCTCTTTCTTAAAGGTTCTTAAGAAGCCCAAGAACAGGC
TCAATAACCAGTCACTGTCGATAACAGTTGTTAACAGCTACTGTATTCTG
AATTTACGTTTGTCATGGTCTGTTGTTtagaattttctttcttcttttcg
aAAATTGGTAATCGGATTAATTTGACGTGACGTGACG Run BLAST on NCBI protein sequence of TCONS_00051364-protein >TCONS_00051364-protein ID=TCONS_00051364-protein|Name=TCONS_00051364-protein|organism=Clytia hemisphaerica|type=polypeptide|length=288bp
MDHNQESSVSNDPRPTLLGQLTTAFMIDWYMFPAKITYFLANGIDGAFKP
YALSFLVGVGLNKAEAGLVTGLRLLGMTFAGPLWGFITDKRQNHVLILIL
MALMSILWVGGQPLLSIWIGDQWTNTCPAPLETNTTSSGSATLNEANSTI
NFRSTRLIIFLFVNILASCFDGCIITLVDAGVVKRIRASPTPKEFGWNRM
FGTFGFSAGSFLSGLVSDMFPYTEHVNCFTGAYVVLSCFLLGLVVVCPFL
FKLPENKVNPYGHEMRPPALDVQPEGGFDXCSNYQKIK Run BLAST on NCBI transcript from alignment at scaffold_201:7571..10054+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051364 ID=TCONS_00051364|Name=TCONS_00051364|organism=Clytia hemisphaerica|type=transcript|length=2484bp|location=Sequence derived from alignment at scaffold_201:7571..10054+ (Clytia hemisphaerica)
GtcaaacgcaaaaaaatttgatgCGAATTTTCAGTGAAGAAAAATGGATC
ACAATCAAGGTAGGAAGGTAATCTTCGTAGTATGGAATTATTTTCGCCAA
CAGTTACGGAGAAAATCACCTTCCACGAAAATTAGCAGCCTTGAGGGAGG
TGAAGATGTCAACTCTATGGTTGACTGTGTTGGGGTCTATACCTGTGTCT
AGTTAACAAAAAGGgcaccttaagggaagaaatttcggTGGATGGCTGAA
AACGTTTTTTCGTAGGGAATTTAGTCAGGGAAAAAGCTAATTTTgacgag
aatttaatttggcggatgacggatTTTTAAATCCGAAATCAGAGTGGaaa
cataaaaagaaaaaaattagatttggtcctattgttatatcatgctaata
tatgcaaaaaatgtttttcttttcctctttctgaccaatattgctccaca
tcagtgtcaatccaatgtgaaaaagcttgtgaattaaaattgacgagtaa
gcaaacgatttcactcttatttaaaaacaaaaactttaacGACACGTTTt
gatcttcttcattttttaagggcaacctaaatatttttccatCTGTTTCT
CTATAGAGTCGTCAGTCAGTAATGACCCTCGCCCAACGTTACTTGGTCAA
TTGACGACAGCTTTCATGATCGATTGGTACATGTTCCCTGCCAAAATTAC
TTACTTTCTCGCAAATGGCATAGATGGCGCTTTCAAACCTTATGCATTAT
CCTTCCTTGTCGGCGTCGGATTGAACAAAGCAGAAGCAGGTCTGGTGACA
GGTCTTCGTCTTCTTGGGATGACTTTTGCTGGTCCTTTATGGGGCTTCAT
TACCGACAAACGACAAAATCATGTTCTGATTCTCATACTCATGGCCTTAA
TGTCAATACTATGGGTAGGCGGTCAACCTTTGTTATCTATATGGATCGGT
GATCAATGGACAAACACTTGCCCTGCACCTTTGGAAACAAACACCACAAG
CAGTGGATCAGCCACACTCAACGAGGCCAATTCGACTATTAACTTCCGTT
CCACTCGATTGATTATATTTCTAtttgttaatattttggctTCATGTTTT
GACGGGTGTATTATAACATTGGTGGATGCTGGTGTTGTAAAAAGAATACG
TGCATCCCCGACTCCAAAAGAATTTGGTTGGAACCGTATGTTTGGAACCT
TTGGTTTCTCCGCTGGTTCATTCCTTTCTGGTCTTGTTTCTGACATGTTT
CCGTATACGGAACATGTGAATTGTTTCACTGGAGCTTATGTTGTTTTGAG
TTGTTTTTTATTGGGCTTGGTGGTAGTATGTCCATTCCTGTTCAAATTAC
CAGAAAATAAAGTGAATCCATATGGTCACGAGATGCGTCCGCCTGCGCTG
GACGTACAGCCGGAGGGTGGTTTTGATNCCTGTTCAAATTACCAGAAAAT
AAAGTGAATCCATATGGTCACGAGATGCGTCCGCCTGCGCTGGACGTACA
GCCGGAGGGTGGTTTTGATGATGTATTTTCAAACGAAGTGATAAAGCCGG
AAACCAATAAATCTCTAACAGGTTTACTattcaaaacattgaaaaacgTT
GAAATGATCATATTTCTTTCAACTGTTTTAATTGTAGGAACTCTTCAAGG
TGTCCTCATTAGTTTTACTACGTTACGAATCAAGGAACTGAATGGTCCAA
CATCCTTGGCTGGTTTCGTTGTATCTATAGTCGCCCTATCGTCACTACCG
TCTATGACACTTGCCTCaagattgataaatttttttaaaggctaTTGGGG
AACATTTTTCACATGCTGCACCATATATGCAATGTCTTTCATCACTATGG
GTCATATTAAAAACCCGTGGCTGGCTATTCCGATTTGTACATTTGTTGGA
TTTGGAGTGGGGCTAATGATTGTAACTCCAGTATTATACATCAAATCAAA
CACAGACCCTAAAATTCATACAACAATGTTATCCATACGAACCACTACAT
TTTTCGGCTTTGGATATATAATTGCTAATATAGTTGGCGGACAGATCGTT
AGTCGTTATGGTGGTTCGCAATTATTTTTCAGTTCGGGTCTACTGGCTGT
TGGATGGAATTTTGTTCTATTGGTTGTGATTGGCGTTAAAGCTTTGAGGA
GAAATGAAAGAGAAAATGTGACCTAtggacaaactttttgaaaaccgTCT
CGCTACTATGTACAGGGTGATCTAATAAACAtgtctgtttttctttttat
aacccTAAGTAGTATAGGATAAATAGGAAGCGtgatttctttaatttaaa
gTGGGAAATCTCTTTCTTAAAGGTTCTTAAGAAGCCCAAGAACAGGCTCA
ATAACCAGTCACTGTCGATAACAGTTGTTAACAGCTACTGTATTCTGAAT
TTACGTTTGTCATGGTCTGTTGTTtagaattttctttcttcttttcgaAA
ATTGGTAATCGGATTAATTTGACGTGACGTGACG Coding sequence (CDS) from alignment at scaffold_201:7571..10054+ >TCONS_00051364 ID=TCONS_00051364|Name=TCONS_00051364|organism=Clytia hemisphaerica|type=CDS|length=1734bp|location=Sequence derived from alignment at scaffold_201:7571..10054+ (Clytia hemisphaerica)
ATGGATCACAATCAAGAGTCGTCAGTCAGTAATGACCCTCGCCCAACGTT
ACTTGGTCAATTGACGACAGCTTTCATGATCGATTGGTACATGTTCCCTG
CCAAAATTACTTACTTTCTCGCAAATGGCATAGATGGCGCTTTCAAACCT
TATGCATTATCCTTCCTTGTCGGCGTCGGATTGAACAAAGCAGAAGCAGG
TCTGGTGACAGGTCTTCGTCTTCTTGGGATGACTTTTGCTGGTCCTTTAT
GGGGCTTCATTACCGACAAACGACAAAATCATGTTCTGATTCTCATACTC
ATGGCCTTAATGTCAATACTATGGGTAGGCGGTCAACCTTTGTTATCTAT
ATGGATCGGTGATCAATGGACAAACACTTGCCCTGCACCTTTGGAAACAA
ACACCACAAGCAGTGGATCAGCCACACTCAACGAGGCCAATTCGACTATT
AACTTCCGTTCCACTCGATTGATTATATTTCTAtttgttaatattttggc
tTCATGTTTTGACGGGTGTATTATAACATTGGTGGATGCTGGTGTTGTAA
AAAGAATACGTGCATCCCCGACTCCAAAAGAATTTGGTTGGAACCGTATG
TTTGGAACCTTTGGTTTCTCCGCTGGTTCATTCCTTTCTGGTCTTGTTTC
TGACATGTTTCCGTATACGGAACATGTGAATTGTTTCACTGGAGCTTATG
TTGTTTTGAGTTGTTTTTTATTGGGCTTGGTGGTAGTATGTCCATTCCTG
TTCAAATTACCAGAAAATAAAGTGAATCCATATGGTCACGAGATGCGTCC
GCCTGCGCTGGACGTACAGCCGGAGGGTGGTTTTGATNCCTGTTCAAATT
ACCAGAAAATAAAGTGAATGGATCACAATCAAGAGTCGTCAGTCAGTAAT
GACCCTCGCCCAACGTTACTTGGTCAATTGACGACAGCTTTCATGATCGA
TTGGTACATGTTCCCTGCCAAAATTACTTACTTTCTCGCAAATGGCATAG
ATGGCGCTTTCAAACCTTATGCATTATCCTTCCTTGTCGGCGTCGGATTG
AACAAAGCAGAAGCAGGTCTGGTGACAGGTCTTCGTCTTCTTGGGATGAC
TTTTGCTGGTCCTTTATGGGGCTTCATTACCGACAAACGACAAAATCATG
TTCTGATTCTCATACTCATGGCCTTAATGTCAATACTATGGGTAGGCGGT
CAACCTTTGTTATCTATATGGATCGGTGATCAATGGACAAACACTTGCCC
TGCACCTTTGGAAACAAACACCACAAGCAGTGGATCAGCCACACTCAACG
AGGCCAATTCGACTATTAACTTCCGTTCCACTCGATTGATTATATTTCTA
tttgttaatattttggctTCATGTTTTGACGGGTGTATTATAACATTGGT
GGATGCTGGTGTTGTAAAAAGAATACGTGCATCCCCGACTCCAAAAGAAT
TTGGTTGGAACCGTATGTTTGGAACCTTTGGTTTCTCCGCTGGTTCATTC
CTTTCTGGTCTTGTTTCTGACATGTTTCCGTATACGGAACATGTGAATTG
TTTCACTGGAGCTTATGTTGTTTTGAGTTGTTTTTTATTGGGCTTGGTGG
TAGTATGTCCATTCCTGTTCAAATTACCAGAAAATAAAGTGAATCCATAT
GGTCACGAGATGCGTCCGCCTGCGCTGGACGTACAGCCGGAGGGTGGTTT
TGATNCCTGTTCAAATTACCAGAAAATAAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051364-exon-scaffold_201-1491911889:7571..7629 | TCONS_00051364-exon-scaffold_201-1491911889:7571..7629 | Clytia hemisphaerica | exon |
| TCONS_00051364-exon-scaffold_201-1510915933:7571..7629 | TCONS_00051364-exon-scaffold_201-1510915933:7571..7629 | Clytia hemisphaerica | exon |
| TCONS_00051364-exon-scaffold_201-1575043694:7571..7629 | TCONS_00051364-exon-scaffold_201-1575043694:7571..7629 | Clytia hemisphaerica | exon |
| TCONS_00051364-exon-scaffold_201-1491911889:8177..10054 | TCONS_00051364-exon-scaffold_201-1491911889:8177..10054 | Clytia hemisphaerica | exon |
| TCONS_00051364-exon-scaffold_201-1510915933:8177..10054 | TCONS_00051364-exon-scaffold_201-1510915933:8177..10054 | Clytia hemisphaerica | exon |
| TCONS_00051364-exon-scaffold_201-1575043694:8177..10054 | TCONS_00051364-exon-scaffold_201-1575043694:8177..10054 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_201 | supercontig | scaffold_201:7571..10054 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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