TCONS_00051363 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051363
Unique NameTCONS_00051363
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051363 ID=TCONS_00051363|Name=TCONS_00051363|organism=Clytia hemisphaerica|type=transcript|length=276bp
GTTGAGAATGTGGAGTTAAATCCTGATGAATGTCCGCTAGCTTTCCAAAC
AAAATGGACCGATATGTCAACTTATCGCTTCGAATTGAAATCCAAGATTG
ATGGCTATATCGTGATCAACAACGAGGAAAACAGTTCAGGAGATGGAGAT
CAATCAACCATCAAACTTGGTGTCAGCAACACTACAAGAGTTGTTGATAT
TCTACCTATACTTGGCAAGAAATTCATGGTAGCTGACAAACCAAATATGT
TGAGGTTGAAGTCCCATAATCAAGGT
Run BLAST on NCBI

transcript from alignment at scaffold_201:577..2585+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051363 ID=TCONS_00051363|Name=TCONS_00051363|organism=Clytia hemisphaerica|type=transcript|length=2009bp|location=Sequence derived from alignment at scaffold_201:577..2585+ (Clytia hemisphaerica)
GTTGAGAATGTGGAGTTAAATCCTGATGAATGTCCGCTAGCTTTCCAAAC AAAATGGACCGATATGTCAACTTATCGCTTCGAATTGAAATCCAAGATTG ATGGCTATATCGTGGTAAGTTTCCTTGCACGAATCTCGAAGCTCTAATCA AGGACAAAAGGCtgtaaacttttcaaaattaaaaaaagaaaattctctaA AATGGCCAGAATTCCCCCCAATTCATCCCTTCAATGTTGTAGTGGGATAG TCACACGACATCGCCACATCTTACTCAAAATAACATTGAAGGGAGGGGAT TTTTATGAAACTCTACATACCTTTTGTCCGGGATTGTTGTCTACCATTAT TATAATTGTATACGTCACGTGAGTTCCTTGCACAATATTATTAAATCCAA GTTAATGTGAAATTCTGAACTTTGTGCGTTATCTAGTGTGCTTTGCATTT GCTTATCATCTTCCTTTTCAGCGATTAATTACCGTTAATTTTgcgttttc gcgagtttttgCCCTTCGTAAAATATGTTACGTAGTTTAAAGGGCCACTT TCATCcgatttgcgaaattaaatccacgtggaatttttcaaaaacgctGA TCCgtaaacaggggggggggtatcgagtcagtgtactggcccatagctgg tggggtagtgtattttttaggttaaattgagttagtacagtgtactaaaa gggtggtcctctgagaaaaatacaatgaaaaagttagtgcagtgtactaa aagggtggtcctctgagaaaaatacaatgaaaaagttagtacagtgtact aaaagggtgatcctctgagaaaaatacaatgaaaaagttagtacactgta ctaaaaagggtggtgttcTGAATTGATACACACTGAGAAGTTAGTACAAT GTACTAATTTCAGTAgtaaaaacacacaaacccAGTGAATTCCAATGTAT ATTTGGCATAATTTGCCAGGTCCAAGCTGGTCCGAGACCTTCAAGTCAAG GCTGGCTAAGCTATACAAATTGGTACACTGATTTTCTCCCAATGTTTCCT GTTTacttgattggatttgttttagagTCGCAGCATGCGCAAGTAGAGAC CGGCCTTAATTCCAATCTTGTTTACGTTTTCTTTAAGGCCCTATCTACAT TATGGCAACAACAAGAATTTGAATGTGTAAACGTTCGAATCGAAGCTTtc aagttttataaaaacacatccgctctattgttttatgttttttagtAACC TTGTTGGATTGatgttaattgaaaaaaaatctgtatataagtgaaatcac cggggggagggggtgaaaacgaccgtacgttcggccaaaaattaggtctc taaaatcggtcccttacagtgcaggaaaaatttggctgaagaTCGATCCT TATAgtgtaatttttcgaaattttttgcccttttcagggcaaaatttttt gaaatttctcaaattttacctcaaaatttttacacccttacagtgcactt NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtacagtgcactttttcccac ttgctcacaaatcaacccttacagtgcactttccaaagtccaaaaaacct acccttaagggccgcacgtccagtaggtcacttacctggagtgtactaca gtgtactaaaaagggtggtggtctaattttttggaaaaaaatccaaaaat caagttagtaccctatggtccagtacactgacttggtaccccccccctgc cgcaaaaataaatccagaaaatttcacaaatattTTTGGCTCGCGAAATT ATATCTCGCGAATATTTTTTccgattaaaatttttttcttctcacAGATC AACAACGAGGAAAACAGTTCAGGAGATGGAGATCAATCAACCATCAAACT TGGTGTCAGCAACACTACAAGAGTTGTTGATATTCTACCTATACTTGGCA AGAAATTCATGGTAGCTGACAAACCAAATATGTTGAGGTTGAAGTCCCAT AATCAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032548XLOC_032548Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051363-exon-scaffold_201-1491911889:577..690TCONS_00051363-exon-scaffold_201-1491911889:577..690Clytia hemisphaericaexon
TCONS_00051363-exon-scaffold_201-1510915933:577..690TCONS_00051363-exon-scaffold_201-1510915933:577..690Clytia hemisphaericaexon
TCONS_00051363-exon-scaffold_201-1575043694:577..690TCONS_00051363-exon-scaffold_201-1575043694:577..690Clytia hemisphaericaexon
TCONS_00051363-exon-scaffold_201-1491911889:2424..2585TCONS_00051363-exon-scaffold_201-1491911889:2424..2585Clytia hemisphaericaexon
TCONS_00051363-exon-scaffold_201-1510915933:2424..2585TCONS_00051363-exon-scaffold_201-1510915933:2424..2585Clytia hemisphaericaexon
TCONS_00051363-exon-scaffold_201-1575043694:2424..2585TCONS_00051363-exon-scaffold_201-1575043694:2424..2585Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_201supercontigscaffold_201:577..2585 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.521429 2.0339 2.36155 1.73281 46.4096 36.1179 13.4076 17.5728 8.78797 10.341 9.509 3.12542 1.04036 8.28324 4.44127 6.03714 2.74004 4.01208 1.10858 7.54033 1.51244 0.737716 0.59786 2.17417 13.436 8.99351 10.7247 3.81524 5.78746 1.76895
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051363 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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