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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051354 ID=TCONS_00051354|Name=TCONS_00051354|organism=Clytia hemisphaerica|type=transcript|length=1567bp
GCTGCCATAAACAACAAACGGTTGATGAAGACAGTCATGAAAAACAGGAT
CGGTGTTATCCATGTTgacaaaattagaaaatataatCTTCGTTTGTTCA
TTTTAATGTCATAATTTGTAAGGCTTGACAGCATGACATACCGGTCATAA
CTGATCAAGGCAATATTGAGAGAGGAAGTACCAATCATCCAGGGTGCTAA
GATATTCTTCATGTTTTCAAGAAAACAACTCGATCGTAGATCCTCTGATA
ACATTTGTATTGCGAAAACAATACATAATCCAAGACCAACCAATGTATCT
GACGTTGATAGGGATGATAAaattttgttggattttttaCATCGCATTGA
AGGTTTTTGTAGAATGATCAATGAGATGACACTTCCGGTTGTTGCCAAGA
TGGAGCATATCACAAATCCGGTGCCCAAAATGTATCTTGAACTGCTGGAG
ATATCGCCATAGCTGTATGTACATGATATTGATGTAGAGGCTGTGCTATT
TTTCATCTTCAGCTCCAATAATCAAACAAATNAAGATGTATCTTGAAATG
CTGGAGATATCACCGTAACTGTATGTACATGATATTGATGTAGAGGCTGT
GCTATTATTCATCTTCAGTAGTTCCAATAATCAAACAAATGGTTGAAATG
ATAAGTGAGTCTCTTGGGTAGAGACACAATACTGATTTATATGTTTATTC
AGCTTGGAGTATGAACCTATAGAAACAACGCGCGCCCATATCTGATCTTT
ACCTTTCATGTTTGCCGCTGTTTACTTTTCGCTATTATCAAATGTAACGC
TATTATTGGTTGATTTTGATCACGTGAGCAGATTTTTAACGAAAGTTATA
AATTGTTGTGTACAGAAAacagagagaagagaaaaagagataaaaagCAG
CTCGTTATAAAGACAGTAGAAAAACAAGGGGAAATTTATCaggaaaaaaa
ggttttgtCAATTCTGAATTTAAACAACAtgcttttaaagtttttaaaat
ttacattCAAATGCCAAATTTACAATATAATTGTTAAATGATAGATGAAA
TTGCCAAAGTGTGGTAACTGCTACAAATATATACCAGCGACAGATTTTCT
GTTGATAAGAGTTTCAGATAAGCTCTTAATCTTTTGGAGGTCTTGGAGAG
AATATAGTATTATGTTGAACACTAAGGAGTTAAATTGTAACTTCTGCATA
AAGTCCATCCCATCCAGAAAAGATATTCTGTTTTAAGCCCTCCATAACTT
TTAGGACAACCTATATGGGTTGCATTAATCCTCTTAACATTTCGACTTTA
TTCTTTTTCGACTGTATATACCCCATCAACACGTGATAGTACAAACCGAA
CCCTTCTCATTCAAGGTATTAAGTCATATTGCCTTTCAAAAACAGACTCT
GCTGTACGAACATTACGATTGCTCGAGGAAATCAATGAGGTGAATTTTGC
GAGTCTGTAGTTTTTTCCGTGTTTAAGTCTAAACAGAGCTTTACGCCGaa
aatacattcgaattttcaaatgtaaacagcgctttgaaaatcgaatgttt
ttgagtgtTCACACGAG Run BLAST on NCBI protein sequence of TCONS_00051354-protein >TCONS_00051354-protein ID=TCONS_00051354-protein|Name=TCONS_00051354-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MKNSTASTSISCTYSYGDISSSSRYILGTGFVICSILATTGSVISLIILQ
KPSMRCKKSNKILSSLSTSDTLVGLGLCIVFAIQMLSEDLRSSCFLENMK
NILAPWMIGTSSLNIALISYDRYVMLSSLTNYDIKMNKRRLYFLILSTWI
TPILFFMTVFINRLLFMA Run BLAST on NCBI transcript from alignment at scaffold_200:209730..211296 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051354 ID=TCONS_00051354|Name=TCONS_00051354|organism=Clytia hemisphaerica|type=transcript|length=1567bp|location=Sequence derived from alignment at scaffold_200:209730..211296 (Clytia hemisphaerica)
CTCGTGTGAacactcaaaaacattcgattttcaaagcgctgtttacattt
gaaaattcgaatgtattttCGGCGTAAAGCTCTGTTTAGACTTAAACACG
GAAAAAACTACAGACTCGCAAAATTCACCTCATTGATTTCCTCGAGCAAT
CGTAATGTTCGTACAGCAGAGTCTGTTTTTGAAAGGCAATATGACTTAAT
ACCTTGAATGAGAAGGGTTCGGTTTGTACTATCACGTGTTGATGGGGTAT
ATACAGTCGAAAAAGAATAAAGTCGAAATGTTAAGAGGATTAATGCAACC
CATATAGGTTGTCCTAAAAGTTATGGAGGGCTTAAAACAGAATATCTTTT
CTGGATGGGATGGACTTTATGCAGAAGTTACAATTTAACTCCTTAGTGTT
CAACATAATACTATATTCTCTCCAAGACCTCCAAAAGATTAAGAGCTTAT
CTGAAACTCTTATCAACAGAAAATCTGTCGCTGGTATATATTTGTAGCAG
TTACCACACTTTGGCAATTTCATCTATCATTTAACAATTATATTGTAAAT
TTGGCATTTGaatgtaaattttaaaaactttaaaagcaTGTTGTTTAAAT
TCAGAATTGacaaaacctttttttcctGATAAATTTCCCCTTGTTTTTCT
ACTGTCTTTATAACGAGCTGctttttatctctttttctcttctctctgtT
TTCTGTACACAACAATTTATAACTTTCGTTAAAAATCTGCTCACGTGATC
AAAATCAACCAATAATAGCGTTACATTTGATAATAGCGAAAAGTAAACAG
CGGCAAACATGAAAGGTAAAGATCAGATATGGGCGCGCGTTGTTTCTATA
GGTTCATACTCCAAGCTGAATAAACATATAAATCAGTATTGTGTCTCTAC
CCAAGAGACTCACTTATCATTTCAACCATTTGTTTGATTATTGGAACTAC
TGAAGATGAATAATAGCACAGCCTCTACATCAATATCATGTACATACAGT
TACGGTGATATCTCCAGCATTTCAAGATACATCTTNATTTGTTTGATTAT
TGGAGCTGAAGATGAAAAATAGCACAGCCTCTACATCAATATCATGTACA
TACAGCTATGGCGATATCTCCAGCAGTTCAAGATACATTTTGGGCACCGG
ATTTGTGATATGCTCCATCTTGGCAACAACCGGAAGTGTCATCTCATTGA
TCATTCTACAAAAACCTTCAATGCGATGtaaaaaatccaacaaaattTTA
TCATCCCTATCAACGTCAGATACATTGGTTGGTCTTGGATTATGTATTGT
TTTCGCAATACAAATGTTATCAGAGGATCTACGATCGAGTTGTTTTCTTG
AAAACATGAAGAATATCTTAGCACCCTGGATGATTGGTACTTCCTCTCTC
AATATTGCCTTGATCAGTTATGACCGGTATGTCATGCTGTCAAGCCTTAC
AAATTATGACATTAAAATGAACAAACGAAGattatattttctaattttgt
cAACATGGATAACACCGATCCTGTTTTTCATGACTGTCTTCATCAACCGT
TTGTTGTTTATGGCAGC Coding sequence (CDS) from alignment at scaffold_200:209730..211296 >TCONS_00051354 ID=TCONS_00051354|Name=TCONS_00051354|organism=Clytia hemisphaerica|type=CDS|length=504bp|location=Sequence derived from alignment at scaffold_200:209730..211296 (Clytia hemisphaerica)
ATGAAAAATAGCACAGCCTCTACATCAATATCATGTACATACAGCTATGG
CGATATCTCCAGCAGTTCAAGATACATTTTGGGCACCGGATTTGTGATAT
GCTCCATCTTGGCAACAACCGGAAGTGTCATCTCATTGATCATTCTACAA
AAACCTTCAATGCGATGtaaaaaatccaacaaaattTTATCATCCCTATC
AACGTCAGATACATTGGTTGGTCTTGGATTATGTATTGTTTTCGCAATAC
AAATGTTATCAGAGGATCTACGATCGAGTTGTTTTCTTGAAAACATGAAG
AATATCTTAGCACCCTGGATGATTGGTACTTCCTCTCTCAATATTGCCTT
GATCAGTTATGACCGGTATGTCATGCTGTCAAGCCTTACAAATTATGACA
TTAAAATGAACAAACGAAGattatattttctaattttgtcAACATGGATA
ACACCGATCCTGTTTTTCATGACTGTCTTCATCAACCGTTTGTTGTTTAT
GGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051354-exon-scaffold_200-1491911889:209730..211296 | TCONS_00051354-exon-scaffold_200-1491911889:209730..211296 | Clytia hemisphaerica | exon |
| TCONS_00051354-exon-scaffold_200-1510915933:209730..211296 | TCONS_00051354-exon-scaffold_200-1510915933:209730..211296 | Clytia hemisphaerica | exon |
| TCONS_00051354-exon-scaffold_200-1575043694:209730..211296 | TCONS_00051354-exon-scaffold_200-1575043694:209730..211296 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_200 | supercontig | scaffold_200:209730..211296 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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