TCONS_00051352 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051352
Unique NameTCONS_00051352
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length755

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051352 ID=TCONS_00051352|Name=TCONS_00051352|organism=Clytia hemisphaerica|type=transcript|length=755bp
GTCTCTTGGGTAGAGACACAATACTGATTTATATGTTTATTCAGCTTGGA
GTATGAACCTATAGAAACAACGCGCGCCCATATCTGATCTTTACCTTTCA
TGTTTGCCGCTGTTTACTTTTCGCTATTATCAAATGTAACGCTATTATTG
GTTGATTTTGATCACTTGAGCAGATTTTTAACGAAAGTCATAAATTGTTG
TGTACAGAAAACAGAGAGAGAGAAAGATATAAAAAGCAGATCGTTATAAA
GACAGTAgaaaaacaagggaaatttattaggaaaaaaatcatttttctca
aaaaggtTTGGTCAATTCTGAATTTAAACAACAtgcttttaaagtttttt
aaatttacaTTCAAATGCCAAATTTACAATATAATTGTTAAAATGATAGA
TGAAATTGCCAAAGTGTGATAACTGCTACAAATATATACCAGCGACAGAT
CTTCCTTGATAAGAGTTTCAGATAAGCTCTTAATCTTTTGGAGGTCTTGG
AGAGAATATAGTATTATGTTGAACACTAAGGAGTTAAATTGTAACTTCTG
CATAAAGTCCATCCCATCCAGAAAACNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
ATTACGATTGTATGATGTTATCAACCACACCACCAAGACAACAGCACAAA
ATCATCGCAGATTCAAATTATACTGTTAATTTTCGTTATAGCTTTTATAT
TTTAC
Run BLAST on NCBI

transcript from alignment at scaffold_200:203353..204107

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051352 ID=TCONS_00051352|Name=TCONS_00051352|organism=Clytia hemisphaerica|type=transcript|length=755bp|location=Sequence derived from alignment at scaffold_200:203353..204107 (Clytia hemisphaerica)
GTAAAATATAAAAGCTATAACGAAAATTAACAGTATAATTTGAATCTGCG
ATGATTTTGTGCTGTTGTCTTGGTGGTGTGGTTGATAACATCATACAATC
GTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTCTGGATGGGATGGACT
TTATGCAGAAGTTACAATTTAACTCCTTAGTGTTCAACATAATACTATAT
TCTCTCCAAGACCTCCAAAAGATTAAGAGCTTATCTGAAACTCTTATCAA
GGAAGATCTGTCGCTGGTATATATTTGTAGCAGTTATCACACTTTGGCAA
TTTCATCTATCATTTTAACAATTATATTGTAAATTTGGCATTTGAAtgta
aatttaaaaaactttaaaagcaTGTTGTTTAAATTCAGAATTGACCAAac
ctttttgagaaaaatgatttttttcctaataaatttcccttgtttttcTA
CTGTCTTTATAACGATCTGCTTTTTATATCTTTCTCTCTCTCTGTTTTCT
GTACACAACAATTTATGACTTTCGTTAAAAATCTGCTCAAGTGATCAAAA
TCAACCAATAATAGCGTTACATTTGATAATAGCGAAAAGTAAACAGCGGC
AAACATGAAAGGTAAAGATCAGATATGGGCGCGCGTTGTTTCTATAGGTT
CATACTCCAAGCTGAATAAACATATAAATCAGTATTGTGTCTCTACCCAA
GAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032537XLOC_032537Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051352-exon-scaffold_200-1491911889:203353..204107TCONS_00051352-exon-scaffold_200-1491911889:203353..204107Clytia hemisphaericaexon
TCONS_00051352-exon-scaffold_200-1510915933:203353..204107TCONS_00051352-exon-scaffold_200-1510915933:203353..204107Clytia hemisphaericaexon
TCONS_00051352-exon-scaffold_200-1575043694:203353..204107TCONS_00051352-exon-scaffold_200-1575043694:203353..204107Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_200supercontigscaffold_200:203353..204107 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.190649	0	0.266819	0.0892522	0.102576	0.120024	0.219365	0.225862	0.383646	0.0871124	1.76055	0.568495	0.444146	0	0.261827	0.349498	0.375837	0.323242	0.403365	0.702258	0.764058	0.24886	0	0.320506	0	0.462136	0.76229	0.224503	1.11872	0.355259
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051352 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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