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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051340 ID=TCONS_00051340|Name=TCONS_00051340|organism=Clytia hemisphaerica|type=transcript|length=1690bp
AAAAAATAGTGAGATTGAGATGTGGTGATTTCGAGAGAAACATATGTGTG
TGTTATAAAAGAAACAGCGAATTctgttctgataaaaaatttcaaacaac
cAAATTGTTGTGTACTATATGAATTGCCGAGAAGAGAGATTTCGGATTCA
GaggaaaacaaacaaaaaagaagttttctCAGAGAATGGATATTCACAGC
AGAAATTTGGTTTGGGAGAGAAGCATAGCAGCATGTGTTAGACAACATCC
ATGCCTGTACGATAAAAGTCTTTCATCTTACAAGAAACCGTCTATCAAAG
AAGAAGCATGGGCACGAGTGGATGAAGAATTGAAATTACCAAAAGGTAAA
AGCAATTTTCAAGTCACTGAAACTCAATTAAATGTGTAATGTGTTAGAGA
AATGAAGCGTTGGTTGAATGGGGACAAGTAAAACGCGAATTGTAACACAC
TTAAAGCAAACTTAGTTCAgtgatcaaaacaaaatggacGAAATCTGACG
AAATCTCTCCCATAATTCTGAATAGGTTGTTGGTCATGCATCTATATAAT
TTCTGTTTTTCGATATTTTCCAGTTATCATACGTAAAGTACTATAAATTC
TCGATGCAAGTTCACGAAGTTGTACAAAAACTAAaccaaaaactatatag
aagtcGTAAGCACAGTTTATAGAATCTCTCAGATTTCAAAGTGGCgacac
aaaaaaaattgttaactGGAACTTTCTTTATTACTTCAGGGATGGGTCAA
CGGCAATTCGTCATACTTTACAAACGGTACAGCCGTAAACGCGTCGCTTA
CAAGAAGGCATTAAGTAACGCAAACCTGAAAGAAATCGAGAAAACGAAAC
GTGATTTGGATGCATACGATTTCTTTCATTGGTTCAATCAACATTTACGA
GAATACAAAGGGCGGAACCAAATAACGGGTGGTGAAGAAGACGGACAATA
CCGTAACCATGGTGATGAagatttcaaccaatcagatgacGATTCAACAG
AAAGTTTGACCATCATCCATACAAATCATTATGGAAATGTGGATCCAACG
TATTTACAAGAAGAAGAGATATTCGACGAAAAACCCATACAATACCAAAA
TACACTAGATAATCCGAGCTTTCAACATCGCCATTCAAATCATAATATTC
CATCAGGCGAACAACAAGCGTCTAGTCAAAACTCAAATCAACATGAAGCA
GTCGCTACAAATTTTCACCCTACGCCTATTTCAGTGTCGGAGAATCTCGA
CACGTCAAATCAAACACCACAACAAACTTTCTCTTCCTCCTCTACAATTA
AACAACAGCGACAGGATCCACAAACGGAGAGGAGGAAAACTTATAATAAC
GTGACATCCACCACAGCCCAACACGACACTCATCCAGATGATATTTTCGG
TCAAATGATTGCTTCTGAATTGAAAACATTTCCAGATCACATGAAATTCA
GAGTTAAGCATGAATTGAATAATGTACTTTTCAAGTTTCGTGAACAACAA
ATGGCTGGTGGGCAGctttgaaaatacttttttttaaatgcctTCTGAAG
ATTTTCTgtataattcttttaattttataGCTTCAACGTTGATAGGATAA
TCCACAATGGTAggccgaaattaaaaaaaaagattaaagccttctaatca
atttctaattttaaaaGCTTCTGATGGGTCAACATGGTAA Run BLAST on NCBI protein sequence of TCONS_00051340-protein >TCONS_00051340-protein ID=TCONS_00051340-protein|Name=TCONS_00051340-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
MGQRQFVILYKRYSRKRVAYKKALSNANLKEIEKTKRDLDAYDFFHWFNQ
HLREYKGRNQITGGEEDGQYRNHGDEDFNQSDDDSTESLTIIHTNHYGNV
DPTYLQEEEIFDEKPIQYQNTLDNPSFQHRHSNHNIPSGEQQASSQNSNQ
HEAVATNFHPTPISVSENLDTSNQTPQQTFSSSSTIKQQRQDPQTERRKT
YNNVTSTTAQHDTHPDDIFGQMIASELKTFPDHMKFRVKHELNNVLFKFR
EQQMAGGQL Run BLAST on NCBI transcript from alignment at scaffold_200:36799..38488 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051340 ID=TCONS_00051340|Name=TCONS_00051340|organism=Clytia hemisphaerica|type=transcript|length=1690bp|location=Sequence derived from alignment at scaffold_200:36799..38488 (Clytia hemisphaerica)
TTACCATGTTGACCCATCAGAAGCttttaaaattagaaattgattagaag
gctttaatctttttttttaatttcggccTACCATTGTGGATTATCCTATC
AACGTTGAAGCtataaaattaaaagaattatacAGAAAATCTTCAGAagg
catttaaaaaaaagtattttcaaagCTGCCCACCAGCCATTTGTTGTTCA
CGAAACTTGAAAAGTACATTATTCAATTCATGCTTAACTCTGAATTTCAT
GTGATCTGGAAATGTTTTCAATTCAGAAGCAATCATTTGACCGAAAATAT
CATCTGGATGAGTGTCGTGTTGGGCTGTGGTGGATGTCACGTTATTATAA
GTTTTCCTCCTCTCCGTTTGTGGATCCTGTCGCTGTTGTTTAATTGTAGA
GGAGGAAGAGAAAGTTTGTTGTGGTGTTTGATTTGACGTGTCGAGATTCT
CCGACACTGAAATAGGCGTAGGGTGAAAATTTGTAGCGACTGCTTCATGT
TGATTTGAGTTTTGACTAGACGCTTGTTGTTCGCCTGATGGAATATTATG
ATTTGAATGGCGATGTTGAAAGCTCGGATTATCTAGTGTATTTTGGTATT
GTATGGGTTTTTCGTCGAATATCTCTTCTTCTTGTAAATACGTTGGATCC
ACATTTCCATAATGATTTGTATGGATGATGGTCAAACTTTCTGTTGAATC
gtcatctgattggttgaaatctTCATCACCATGGTTACGGTATTGTCCGT
CTTCTTCACCACCCGTTATTTGGTTCCGCCCTTTGTATTCTCGTAAATGT
TGATTGAACCAATGAAAGAAATCGTATGCATCCAAATCACGTTTCGTTTT
CTCGATTTCTTTCAGGTTTGCGTTACTTAATGCCTTCTTGTAAGCGACGC
GTTTACGGCTGTACCGTTTGTAAAGTATGACGAATTGCCGTTGACCCATC
CCTGAAGTAATAAAGAAAGTTCCagttaacaattttttttgtgtcGCCAC
TTTGAAATCTGAGAGATTCTATAAACTGTGCTTACgacttctatatagtt
tttggtTTAGTTTTTGTACAACTTCGTGAACTTGCATCGAGAATTTATAG
TACTTTACGTATGATAACTGGAAAATATCGAAAAACAGAAATTATATAGA
TGCATGACCAACAACCTATTCAGAATTATGGGAGAGATTTCGTCAGATTT
CgtccattttgttttgatcacTGAACTAAGTTTGCTTTAAGTGTGTTACA
ATTCGCGTTTTACTTGTCCCCATTCAACCAACGCTTCATTTCTCTAACAC
ATTACACATTTAATTGAGTTTCAGTGACTTGAAAATTGCTTTTACCTTTT
GGTAATTTCAATTCTTCATCCACTCGTGCCCATGCTTCTTCTTTGATAGA
CGGTTTCTTGTAAGATGAAAGACTTTTATCGTACAGGCATGGATGTTGTC
TAACACATGCTGCTATGCTTCTCTCCCAAACCAAATTTCTGCTGTGAATA
TCCATTCTCTGagaaaacttcttttttgtttgttttcctCTGAATCCGAA
ATCTCTCTTCTCGGCAATTCATATAGTACACAACAATTTggttgtttgaa
attttttatcagaacagAATTCGCTGTTTCTTTTATAACACACACATATG
TTTCTCTCGAAATCACCACATCTCAATCTCACTATTTTTT Coding sequence (CDS) from alignment at scaffold_200:36799..38488 >TCONS_00051340 ID=TCONS_00051340|Name=TCONS_00051340|organism=Clytia hemisphaerica|type=CDS|length=780bp|location=Sequence derived from alignment at scaffold_200:36799..38488 (Clytia hemisphaerica)
tcaaagCTGCCCACCAGCCATTTGTTGTTCACGAAACTTGAAAAGTACAT
TATTCAATTCATGCTTAACTCTGAATTTCATGTGATCTGGAAATGTTTTC
AATTCAGAAGCAATCATTTGACCGAAAATATCATCTGGATGAGTGTCGTG
TTGGGCTGTGGTGGATGTCACGTTATTATAAGTTTTCCTCCTCTCCGTTT
GTGGATCCTGTCGCTGTTGTTTAATTGTAGAGGAGGAAGAGAAAGTTTGT
TGTGGTGTTTGATTTGACGTGTCGAGATTCTCCGACACTGAAATAGGCGT
AGGGTGAAAATTTGTAGCGACTGCTTCATGTTGATTTGAGTTTTGACTAG
ACGCTTGTTGTTCGCCTGATGGAATATTATGATTTGAATGGCGATGTTGA
AAGCTCGGATTATCTAGTGTATTTTGGTATTGTATGGGTTTTTCGTCGAA
TATCTCTTCTTCTTGTAAATACGTTGGATCCACATTTCCATAATGATTTG
TATGGATGATGGTCAAACTTTCTGTTGAATCgtcatctgattggttgaaa
tctTCATCACCATGGTTACGGTATTGTCCGTCTTCTTCACCACCCGTTAT
TTGGTTCCGCCCTTTGTATTCTCGTAAATGTTGATTGAACCAATGAAAGA
AATCGTATGCATCCAAATCACGTTTCGTTTTCTCGATTTCTTTCAGGTTT
GCGTTACTTAATGCCTTCTTGTAAGCGACGCGTTTACGGCTGTACCGTTT
GTAAAGTATGACGAATTGCCGTTGACCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051340-exon-scaffold_200-1491911889:36799..38488 | TCONS_00051340-exon-scaffold_200-1491911889:36799..38488 | Clytia hemisphaerica | exon |
| TCONS_00051340-exon-scaffold_200-1510915933:36799..38488 | TCONS_00051340-exon-scaffold_200-1510915933:36799..38488 | Clytia hemisphaerica | exon |
| TCONS_00051340-exon-scaffold_200-1575043694:36799..38488 | TCONS_00051340-exon-scaffold_200-1575043694:36799..38488 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_200 | supercontig | scaffold_200:36799..38488 . |
Blast
The following BLAST results are available for this feature:
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