TCONS_00051338 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051338
Unique NameTCONS_00051338
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length649

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051338 ID=TCONS_00051338|Name=TCONS_00051338|organism=Clytia hemisphaerica|type=transcript|length=649bp
TCTTTTATAGCCTTTAGGGGAGAGTGGACACGAAAAGTGCCCAATTGCTG
CACAGTACTGAAACCTGCTGACTCCCCTGTATGAAATGAATTAATTTAAA
AGTCTGCCCTTTATAAATAGTAATTCAATATTGGTTAAAAAGTAATCATA
TTTGTATGTAATTGATTTCATTAGCCCCTGTATTTGTTCCGTCAACCCCT
TGTCTGACCATGGCTGgatgaaaatgaatttttaaagcAATGTGTAAGGT
TTGTTTTGTATCCCTTTACAGACCCCAGCTAGGCAATAAACTGTACAAAA
GCTGAACTCTAATTATTTGAATTtaatgcttgtttttttttttaattata
tatTATTGTTGGTATGGAATTGTTTTAATATCTTTATCAATGCTTCTTGA
TATAATTGATTAAAAGTTTTGAAGATGTCTGAAGGGTGcctatttttctg
aaaaaatactGTCAACAAGCTCTAACTCTTTTGTCCTGCTTTGTAGTAAA
CAAAAGGCAGACAAATGTGTCATTTATGCAGAGGTTTAATAATTGTTCTA
AAATTTGGTCTTTTCACCATTTTATAtgatagtagggggaaatttgttcg
tttttttgaggtcgctcgatttttttagtcaaagcacttgttatacgtt
Run BLAST on NCBI

transcript from alignment at scaffold_200:5225..5873

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051338 ID=TCONS_00051338|Name=TCONS_00051338|organism=Clytia hemisphaerica|type=transcript|length=649bp|location=Sequence derived from alignment at scaffold_200:5225..5873 (Clytia hemisphaerica)
aacgtataacaagtgctttgactaaaaaaatcgagcgacctcaaaaaaac
gaacaaatttccccctactatcaTATAAAATGGTGAAAAGACCAAATTTT
AGAACAATTATTAAACCTCTGCATAAATGACACATTTGTCTGCCTTTTGT
TTACTACAAAGCAGGACAAAAGAGTTAGAGCTTGTTGACagtattttttc
agaaaaataggCACCCTTCAGACATCTTCAAAACTTTTAATCAATTATAT
CAAGAAGCATTGATAAAGATATTAAAACAATTCCATACCAACAATAatat
ataattaaaaaaaaaaacaagcattaAATTCAAATAATTAGAGTTCAGCT
TTTGTACAGTTTATTGCCTAGCTGGGGTCTGTAAAGGGATACAAAACAAA
CCTTACACATTgctttaaaaattcattttcatcCAGCCATGGTCAGACAA
GGGGTTGACGGAACAAATACAGGGGCTAATGAAATCAATTACATACAAAT
ATGATTACTTTTTAACCAATATTGAATTACTATTTATAAAGGGCAGACTT
TTAAATTAATTCATTTCATACAGGGGAGTCAGCAGGTTTCAGTACTGTGC
AGCAATTGGGCACTTTTCGTGTCCACTCTCCCCTAAAGGCTATAAAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032525XLOC_032525Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051338-exon-scaffold_200-1491911889:5225..5873TCONS_00051338-exon-scaffold_200-1491911889:5225..5873Clytia hemisphaericaexon
TCONS_00051338-exon-scaffold_200-1510915933:5225..5873TCONS_00051338-exon-scaffold_200-1510915933:5225..5873Clytia hemisphaericaexon
TCONS_00051338-exon-scaffold_200-1575043694:5225..5873TCONS_00051338-exon-scaffold_200-1575043694:5225..5873Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_200supercontigscaffold_200:5225..5873 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.250241	0.243742	1.37974	2.47297	0	0.091089	0	0	0	0.0883028	0	0	0	0.118932	0.142298	0.101686	0	0	0.222041	0	0.174362	0.388447	0.193185	0.181224	0	0.158264	0	0.290144	0.197834	0.108114
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051338 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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