TCONS_00051336 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051336
Unique NameTCONS_00051336
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1429

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051336 ID=TCONS_00051336|Name=TCONS_00051336|organism=Clytia hemisphaerica|type=transcript|length=1429bp
NNCGAGATTGACTTATCAGAGCCAGAGGAAACATTCAATGCAAGGGCTAG
CCAAACAGATGGCTATGAGTCACTCAACGAAAATGAGAATCAGAACCCTG
TAGTTTTAGTAGATAAGGAACAGCAAAACAATGGGGAACTAAAAGAGCCA
GAACTTGAATTAGATGTCGAAAAGCTTGTCTCTGTGTCAACTGAGGAAGA
AAGATCGAGCCCTGTTGACGAAAAATTGGCTCAGTTAATTAAGACAAACT
GGGACGGTGAGAAGCCTTTTGAGAacatgaaaaagattttcaaaacataC
CCTTGCCCAGAAAACTGTACCCTTGACCCCCCGAAAGTAAATGGGAAACT
CTGGAAAATCTTGAATNAGCCTTTTGAGAacatgaaaaagattttcaaaa
cataCCCTTGCCCAGAAAACTGTACCCTTGACCCCCCGAAAGTAAATGGA
AAATCTTGAATAGTGCCCAAAGAAAGTCAGATGTTAAACTAGTTACCATA
CagaaatcactgaaaaaaaCCCTGAATGTAAATCTAAAAATCTTAGAAGA
AGTTAAAAATGGTAACGTATCTGTTCAATCTCTGGCACAGAAAACTGTGG
ACATGGCTGCTATTTTGGGCCATGCCTCCTACGAAATTTCACTGAAACGC
AGAATCTTTATTTTTGCAATATCAATCCTCAATACAAGGACTTGTGTGCA
CAGTCACAGCCAATAACTTCAAAACTGTTTGGGGATGATTTCCCAAAACT
AGTCAAAGAGTTGAATCTCACAAATAAAATAAGCAATAAATATGCTAAAT
CATCAACTACAAAAAGATATGACAAACCCCAGAGAGCNCAATAAATATGC
TAAATCATCAACTACAAAAAGATATGACAAACCCCAGAGAGCGCAAAATT
ACAAcagaagaaattcttttttaggTCGAGGGAGGGGGAGCCTCCCATAC
CGTCAAAACAACTACACCCAATCGAAAAGACCAACAAAGAAGTCAaacta
agcaaagaaaacatCCAAAACCAGCTTAATCGACCGTGTACTTCACAAGA
TTCGACACGAAAAAGCAACAGCAATGGTATACAACTTACATGGAAATGCT
GAGATCGAAGCTGGTAACGATTCCACCCTGTCCAACCGTAATGACAATGC
CACAAGCTCCAAATCTGGTACACCCTCTTCACAAAAATCTTACCCTAATG
GCGGGGATCTTATCCGGCAAAGATATCAAAATGTGGGAATAAATGAAAGC
TCAATCAACATTCTTCTTACAAGTTGGAGAAAAGATCGGCAGCTACATCT
AAAGCATCCAAAAAGTGGATACCTCTAAAAACGATTATCAACATAGCTGG
TTGGAAAAATGAACGTATGTTTGCAACCACTTATCAAAGGACAATTGAAT
GCGACTTTGACATTGTCACTTGAAAAAAT
Run BLAST on NCBI

protein sequence of TCONS_00051336-protein

>TCONS_00051336-protein ID=TCONS_00051336-protein|Name=TCONS_00051336-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
XEIDLSEPEETFNARASQTDGYESLNENENQNPVVLVDKEQQNNGELKEP
ELELDVEKLVSVSTEEERSSPVDEKLAQLIKTNWDGEKPFENMKKIFKTY
PCPENCTLDPPKVNGKLWKILNXPFENMKKIFKTYPCPENCTLDPPKVNG
KS
Run BLAST on NCBI

transcript from alignment at scaffold_200:197339..201765-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051336 ID=TCONS_00051336|Name=TCONS_00051336|organism=Clytia hemisphaerica|type=transcript|length=4427bp|location=Sequence derived from alignment at scaffold_200:197339..201765- (Clytia hemisphaerica)
NNCGAGATTGACTTATCAGAGCCAGAGGAAACATTCAATGCAAGGGCTAG
CCAAACAGATGGCTATGAGTCACTCAACGAAAATGAGAATCAGAACCCTG
TAGTTTTAGTAGATAAGGAACAGCAAAACAATGGGGAACTAAAAGAGCCA
GAACTTGAATTAGATGTCGAAAAGCTTGTCTCTGTGTCAACTGAGGAAGA
AAGATCGAGCCCTGTTGACGAAAAATTGGCTCAGTTAATTAAGACAAACT
GGGACGGTGAGAAGCCTTTTGAGAACATGAAAAAGATTTTCAAAACATAC
CCTTGCCCAGAAAACTGTACCCTTGACCCCCCGAAAGTAAATGGGAAACT
CTGGAAAATCTTGAATNAGCCTTTTGAGAACATGAAAAAGATTTTCAAAA
CATACCCTTGCCCAGAAAACTGTACCCTTGACCCCCCGAAAGTAAATGGA
AAATCTTGAATAGTGCCCAAAGAAAGTCAGATGTTAAACTAGTTACCATA
CAGAAATCACTGAAAAAAACCCTGAATGTAAATCTAAAAATCTTAGAAGA
AGTTAAAAATGGTAACGTATCTGTTCAATCTCTGGCACAGAAAACTGTGG
ACATGGCTGCTATTTTGGGCCATGCCTCCTACGAAATTTCACTGAAACGC
AGAATCTTTATTTTTGCAATATCAATCCTCAATACAAGGACTTGTGTGCA
CAGTCACAGCCAATAACTTCAAAACTGTTTGGGGATGATTTCCCAAAACT
AGTCAAAGAGTTGAATCTCACAAATAAAATAAGCAATAAATATGCTAAAT
CATCAACTACAAAAAGATATGACAAACCCCAGAGAGCNCAATAAATATGC
TAAATCATCAACTACAAAAAGATATGACAAACCCCAGAGAGCGCAAAATT
ACAACAGAAGAAATTCTTTTTTAGGTCGAGGGAGGGGGAGCCTCCCATAC
CGTCAAAACAACTACACCCAATCGAAAAGACCAACAAAGAAGTCAAACTA
AGCAAAGAAAACATCCAAAACCAGGTAAGAAACAAATTTAACCTTGACTC
AAAGCTAGAGGAATTTGAAGGAGGTCAACTATCCAAGCATCAGTGCCCAG
TTTTTTATTTGACGTCAATTAGATAAGACGCTTTTGCAACGCTCTTCGGA
AAAATGGCTGAAAACAAACAAAAACATCAAAATTCATGAAAATAACATCA
AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAATCATTTTGTAAATAGG
CAGTCGAACTCTATTAGCTTTAAAGCTAGTACATATTTGTACACTTTTTT
CGACTTTAAAGAATATACACATTAACACATTCACATTAACACATTAACAT
GGGGTAGATATACATCTGATGCTGCTATCATGAATATCATAAAAGGAGAC
TTTTCTCTTTACTTGCTTACCAAGGTCAAAACATTTTGCAAAAAATGCAC
AATTTTCTCCAGAGGAGAAATCTTTCATCAGGGAAGAAAACAAAGAAATA
ATCAAGTATCTAAAGAAAAAGATAATCAAAAAATGCCATCATGAAGATGA
GGAATTTATCTCCCCAATATTTACCAGACCAAAACCAGATGGTTCAATTA
GAATGATATTGAACTTAAAAATATTGAATGAACACATAAAATTTGAACAC
TTCAAAATGAGCAATATTTATTCAGTACTCAACATGATTTCCAAGGGATG
TTTTATGGCAAAAATTGACTTAAAAGATGCATATTACAGTGTAAGGATAG
CTAAGAGATATACCAATACCAAAAGTATCTGAAATTTGAATTTAATAATC
AATTATACCAATTTACTTGTTTTCCAAATGGGCTTGGGCCATGCCCAAGA
AAGTTTACAAAAATAATAAAAGTACCAACCTCAAATCTTAGAAAAGCTGG
TATCCCAGTGTGTGGATATATTGATGATCTCTTTACTAAATCTCAATCCT
ATGAAGGCTGTCTTAAAAACATTATTGAAATAGTAAAATAATTTCACTAT
GTTGGTTTTGCCATTCATCCAATAAAATCTGAATTGGAACCAAAACAGAT
TTTAACTTTTTTGGGGTTTGTTATAAATTCCATTGAAATGTCAGTATCTT
TGACCCCAGAGAAGGAAAACCAACTTAATCTAGTATCACAATTACTAAAA
ATCAAGAATCCAATAATAAGATTTGTAGCAAAAGTTGTTGGTACCTTGGT
TTCTAGTTTCCCGGCTGTAAAATTTGCTCAACTGCACTATAGACATATTG
AAAAAGTAAAATCTGAAGCATTGGCAAAAAATAAAGGAAATTATGAAGCC
AAATGCCAACTTTCCAATGAATCTCGGGCAGAATTAAAATGGTGGAAAAC
AGCCATTCTTAAAAATTGGATAAGTCCACCACCAATAACTCTAGAAATGA
AAACTGATGCATCCACAGGTGATTTCTCTCCAAATTCCTCTGGCGGTTGG
GGAGCAACATGCCAGGATATTCAATGTGGAGGTGGATGGGACATTATAAA
GCAATCTTACCATATAAATACTCGTGAGCTTCTGGCTATCTACTTTGCAC
TTCGATCTTTTAAAAACCTTTGTAAAAGTAAACATGTTCGTATTCTGAGT
GATAACACTACAGCAATTTGCACGGTCAACAAAATGGGCTCTAGCAAAAG
TCTTATAAATAATGATATAAGCAAAGACATTTGGCAGTTTTATGAAGAAA
ATGAAATTTGGGTCACAGCAACTTACATTCCAGGAATAGAGAATGATATT
GCTGACACAGAATCCAGGAGAGAGTATAAAGAGGCAGAGTGGAAACTAAA
TCCTGAAATCTTTGGATTTCTAACTGCTACTTTAAATTTCAAACCAAAAA
TAGACTATTTTGCTAGTAGGCTTAACACTCAGCTACCCAAATATGTCTCC
TACAGGCCTGACCCATATGCTCACTTAATAAATGCTTTAGCCCAAAACTG
GTCCAACACTAAAGGCTACATTTTCCCTCCTTTTAGCTTAATCGACCGTG
TACTTCACAAGATTCGACACGAAAAAGCAACAGCAATGGTATACAACTTA
CATGGAAATGCTGAGATCGAAGCTGGTAACGATTCCACCCTGTCCAACCG
TAATGACAATGCCACAAGCTCCAAATCTGGTACACCCTCTTCACAAAAAT
CTTACCCTAATGGCGGGGATCTTATCCGGCAAAGATATCAAAATGTGGGA
ATAAATGAAAGCTCAATCAACATTCTTCTTACAAGTTGGAGAAAAGGTAC
AAAATCTTCCAATGCTAAGTACCTCACAGCTTGGAAAGATTTCTCTTTGT
CAAGAGGTATTGATTCTTTTGACCCAACAATACCACAAGCCTTAGCTTTC
CTAACAAATTTATTTGAGAAAAATCAAAGCTATGGTTGACTCAATACAGC
TTGCAGTGCTCTTTCAGCTGTATTTGCTCCAAAACAAGGGACAACTTTCG
GAAAACTTCCCATTATAAAAAGATTCATGAAAGGTGTATTTGAAACTAAG
CCATCTTTCCCCAAATATACAGTCGTTTGGGATGTAAACAAAGTCTTTGA
TTTCTTCAGATCCCTTGAGATCACTGCCAACTTGCCACTGAAAATGCTAA
CTCTAAAACTATGTATGCTTTTAATGTTGATATCAGGGGGTCATAGGTCA
CAAACCATACATTGCATTGCAAGAGCTGATGTCAAATTTGACGAAACATC
AGTTTACATTCCTATTATGGAAAAACTGAAGCAAACAAAAGCCACAAACC
ATGTGGAACCCTTAGAATTCAAAATGTTTTCTGAACATAAGTTGTGTGCA
GTGATACACTTAAAAGAATACATTAATAGAGTTGAAACCTTAGCACCAAA
TGCAAAACAGCTGTTCGTTAGCTTTGCAAAACCGCATAAACCTGTATCTA
AAGACACAATTTCACGCTGGTGTAAAGAGGTGCTAAGGTTGTCCGGTATT
GATATTTCTAAATATACGACCCATTCTTCTAGATCGGCAGCTACATCTAA
AGCATCCAAAAAGTGGATACCTCTAAAAACGATTATCAACATAGCTGGTT
GGAAAAATGAACGTATGTTTGCAACCACTTATCAAAGGACAATTGAATGC
GACTTTGACATTGTCACTTGAAAAAAT

Coding sequence (CDS) from alignment at scaffold_200:197339..201765-

>TCONS_00051336 ID=TCONS_00051336|Name=TCONS_00051336|organism=Clytia hemisphaerica|type=CDS|length=459bp|location=Sequence derived from alignment at scaffold_200:197339..201765- (Clytia hemisphaerica)
NNCGAGATTGACTTATCAGAGCCAGAGGAAACATTCAATGCAAGGGCTAG
CCAAACAGATGGCTATGAGTCACTCAACGAAAATGAGAATCAGAACCCTG
TAGTTTTAGTAGATAAGGAACAGCAAAACAATGGGGAACTAAAAGAGCCA
GAACTTGAATTAGATGTCGAAAAGCTTGTCTCTGTGTCAACTGAGGAAGA
AAGATCGAGCCCTGTTGACGAAAAATTGGCTCAGTTAATTAAGACAAACT
GGGACGGTGAGAAGCCTTTTGAGAACATGAAAAAGATTTTCAAAACATAC
CCTTGCCCAGAAAACTGTACCCTTGACCCCCCGAAAGTAAATGGGAAACT
CTGGAAAATCTTGAATNAGCCTTTTGAGAACATGAAAAAGATTTTCAAAA
CATACCCTTGCCCAGAAAACTGTACCCTTGACCCCCCGAAAGTAAATGGA
AAATCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032523XLOC_032523Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051336-proteinTCONS_00051336-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051336-exon-scaffold_200-1575043694:200742..201765TCONS_00051336-exon-scaffold_200-1575043694:200742..201765Clytia hemisphaericaexon
TCONS_00051336-exon-scaffold_200-1575043694:198220..198479TCONS_00051336-exon-scaffold_200-1575043694:198220..198479Clytia hemisphaericaexon
TCONS_00051336-exon-scaffold_200-1575043694:197339..197483TCONS_00051336-exon-scaffold_200-1575043694:197339..197483Clytia hemisphaericaexon
TCONS_00051336-exon-scaffold_200-1510915933:200742..201765TCONS_00051336-exon-scaffold_200-1510915933:200742..201765Clytia hemisphaericaexon
TCONS_00051336-exon-scaffold_200-1510915933:198220..198479TCONS_00051336-exon-scaffold_200-1510915933:198220..198479Clytia hemisphaericaexon
TCONS_00051336-exon-scaffold_200-1510915933:197339..197483TCONS_00051336-exon-scaffold_200-1510915933:197339..197483Clytia hemisphaericaexon
TCONS_00051336-exon-scaffold_200-1491911889:200742..201765TCONS_00051336-exon-scaffold_200-1491911889:200742..201765Clytia hemisphaericaexon
TCONS_00051336-exon-scaffold_200-1491911889:198220..198479TCONS_00051336-exon-scaffold_200-1491911889:198220..198479Clytia hemisphaericaexon
TCONS_00051336-exon-scaffold_200-1491911889:197339..197483TCONS_00051336-exon-scaffold_200-1491911889:197339..197483Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_200supercontigscaffold_200:197339..201765 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0755818	0.135442	0.0725603	0	0.596455	0.330065	0.925599	1.56558	1.471	0.338851	3.38993	0.875478	0.719191	0.819877	0.584274	0.460667	0.448428	0.435489	0.755264	1.5171	0.581946	0.861643	0.153831	0.549429	1.32465	1.21822	0.495642	0.587316	0.444117	0.443701
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051336 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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