TCONS_00051309 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051309
Unique NameTCONS_00051309
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length656

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051309 ID=TCONS_00051309|Name=TCONS_00051309|organism=Clytia hemisphaerica|type=transcript|length=656bp
TACCAAAGAATAACAAAGAAGGAGAACAGGGCGATGGAATTTCTCAGCAT
GACCACGGCTACATTATTTGAAGGATTTCACATCTTTGCACGTTTCATCG
TTCTTTCGTTTCAAGCCAACAAGAACTCAAGATGGGTCGTATGCACGCTA
AGGGaaaaggTATCTCTGGATCCGCACTTCCATACCGAAGAAGTGTACCC
ACTtGGTTGAAATTGACATCTGAAGATGTCAAAGAACAAATCTACAAGTT
GGCTAAAAAGGGTCTGACCCCATCCCAAATTGGTGTTATCCTTCGTGATT
CTCATGGTGTTGCGCAAGTCAGATATGTTACTGGAAATAAAATTCTTCGT
ATCTTGAAGACTAAAGGATTGGCTCCATCATTGCCAGAAGACTTATACTG
TTTGATCAAGAAAGCTGTCTCTGTCCGAAAACATCTTGAGAGAAATAGAA
AGGATCGTGACTCAAAATTCAGACTTATTCTGATTGAAGCTAGAATCCAC
AGATTGGCAAGATACTACAAAACCAAAAGAGTCTTACCTCCAAACTGGAA
ATAcGAATCATCAACTGCATCCGCCCTTGTAGCATAATTGAAACAAATAC
AgtactgaaaaataaaattattagtTTCTGTTGTGTACAGCTCTCCTTTC
TCTCCC
Run BLAST on NCBI

protein sequence of TCONS_00051309-protein

>TCONS_00051309-protein ID=TCONS_00051309-protein|Name=TCONS_00051309-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
MGRMHAKGKGISGSALPYRRSVPTWLKLTSEDVKEQIYKLAKKGLTPSQI
GVILRDSHGVAQVRYVTGNKILRILKTKGLAPSLPEDLYCLIKKAVSVRK
HLERNRKDRDSKFRLILIEARIHRLARYYKTKRVLPPNWKYESSTASALV
A
Run BLAST on NCBI

transcript from alignment at scaffold_200:25779..30580-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051309 ID=TCONS_00051309|Name=TCONS_00051309|organism=Clytia hemisphaerica|type=transcript|length=4802bp|location=Sequence derived from alignment at scaffold_200:25779..30580- (Clytia hemisphaerica)
TACCAAAGAATAACAAAGAAGGAGAACAGGGCGATGGAATTTCTCAGCAT
GACCACGGCTACATTATTTGAAGGATTTCACATCTTTGCACGTTTCATCG
TTCTTTCGTTTCAAGCCAACAAGAACTCAAGATGGGTCGTATGCACGCTA
AGGGGTAAGTAAAAATGTCTTTCATACCTATCAGCGAGCCGTTCAGTATT
TTTGTAAACTTTTCCCTGATTAGAAAATCATTTTTTGGTCGNNNNNNNNN
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CATAATTCTAAAACATACCAATTTTATAAGATTTTGTAAGATGCAGACCT
ATGTAGTATGGTACAAAATCGAAATTTAATTATTGTTGCGGAGCAATCCT
ACACCTTTTGGTTATTTCAGAATTTTGGAACAAAAGTAATTAAAGATAAA
TTGTTTTGTCCATTTAAAAAAGACTGAGAAATGATAATATTTGAATCTGT
TTGAATCCAGATCAAGAAATTTAGAAAAATGTTTTACAGCTTTTTACACC
ATGTTTGTTTACAAGATTTTCCTGTTAATTCATTTAGCCTTGCTTAATTG
CAGACAATGAAATAAACCAGGCTAAGCAGTGCAGGAGATTCTTAAGAAAT
CTTTTTTCGATCCAGCAGAAATGCTGAAATTCTAATTCTGTGAATAATGA
TTCTTCCGACCATCTTGAGGGATTCTTCTGTTTGTTCATGAAAAAAATTT
GCATATCAGCGCTGGTGTAAATAAAAATGAAAAACAAACTTTTTATCTAC
AAAGGTTTTGTTTTGATTTTTGATTGAAAGATCCAACGATGCTGAGTTGG
CAATATTTCCGAAACTCATGTGTACTAGAGTATGCGTATTTAAAAACAAG
TGTGACAAGATTAAAAAAACTAATACCCCAAATAGACAACTAGATAAAAG
TATAATCAAGCTCTACAATCTTCTTTTTTATAGAAAAGGTATCTCTGGAT
CCGCACTTCCATACCGAAGAAGTGTACCCACTGTAAGTTCACTTTTACAG
AAAATCTTCAGNTTCTTTTTTATAGAAAAGGTATCTCTGGATCCGCACTT
CCATACCGAAGAAGTGTACCCACTGTAAGTTCACTTTTACAGAAAATCTT
CAGCCCTGTGCTACTTTCAAAAGATCTGTCCTGGAGAATTATTCAAATTA
AAATTGAATGTTAAAATTTTTAATTAAAAAGATGTATAGNGTACCCACTG
TAAGTTCACTTTTACAGAAAATCTTCAGACCTGTGCTACTTTCAAAAGAT
CTGTCCTGGAGAATTATTCAAATTAAAATTGAATGTTAAAATTTTTAATT
AAAAAGATGTATACTGTGGCGTTTATTTATTGACATTTATTCTTTTCTTT
TAGTGGTTGAAATTGACATCTGAAGATGTCAAAGAACAAATCTACAAGTT
GGCTAAAAAGGGTCTGACCCCATCCCAAATTGGTATATACTTTGCAACTT
AAACATGAAATCATATCTGTGTTTAATATTATCCTAAAATAACAAAATTA
CAAAATCAAATTTTTTAAAGTTGTAACACGAGTTCTAAAGATCTATAGGA
ATTTTAAACTTCAAAAAAGATTTAAAAATTCAATTCTAACAACTTCTGTT
TACCTAGGTGTTATCCTTCGTGATTCTCATGGTGTTGCGCAAGTCAGATA
NTTCAAAAAAGATTTAAAAATTCAATTCTAACAACTTCTGTTTACCTAGG
TGTTATCCTTCGTGATTCTCATGGTGTTGCGCAAGTCAGATATGTTACTG
GAAATAAAATTCTTCGTATCTTGAAGACTAAAGGATTGGCTCCATCATTG
CCAGAAGACTTATACTGTTTGATCAAGAAAGCTGTCTCTGTCCGAAAACA
TCTTGAGAGAAATAGAAAGGTATATACAACAATGTCACTTTTGCTTAACA
GAAGATTTAAAAAAAATCTTGCCATTTTTGGCAAACAATGAAGGCTGTCA
TACTAAACTGTCAATTCTTTATTGCCTAATATTATGTTCTATGTTTCAAA
GTTTTACTTTTGAGATTTCCAGACAAGACAATTAGCTTCCTGCACTTTTA
AACAACATAGCTTCAATCAGGGCATTCTCATTTAATTTCATTCTTATTTT
CAGGATCGTGACTCAAAATTCAGACTTATTCTGATTGAAGCTAGAATCCA
CAGATTGGCAAGATACTACAAAACCAAAAGAGTCTTACCTCCAAACTGGA
AATAGTGAGTCGTTTTCAATCTTTTCTACCCCAGTGACCATTCTCTAAAA
CTAACTACCTTATTACCGTAATACTTGGAATAAANAACTGGAAATAGTGA
GTCGTTTTCAATCTTTTCTACCCCAGTGACCATTCTCTAAAACTAACTAC
CTTATTACCGTAATACTTGGAATAAATGCCCCCTTCTTTTAAACGCCCCT
CCTAAAAGGAAAATTATTAAATAAACGCCCCCTCAAATAAACAAGAGTCT
TCGGGGTGTGATACCTCGCCCTCTTCGATTTTGCTGAAATCTTCTGGACA
ACAAGCACTAAAATCCTGATAAAGAACCAAAACAAAGGGTATATTTGCTC
TAAATATTCGACATTCGAAGTAATACGGACACGAATATTACTACAAGTAT
TCAACGGCCTATTAATACGAAATTTTTCAATTCGTGTTATTAAAATGACT
CGTAACATTCGTGTAATAAGGTAAGTATTTTCCACTTAGATGAAGGTCGG
ATCCTATCTTAGGTACTCATTATTTAAAAAAGTGGATGCTTCATTTTTGC
TCCATTAATAATATGAATAGTTTTTAATGGTATTTTTTTTACTTTTCAGC
GAATCATCAACTGCATCCGCCCTTGTAGCATAATTGAAACAAATACAGTA
CTGAAAAATAAAATTATTAGTTTCTGTTGTGTACAGCTCTCCTTTCTCTC
CC

Coding sequence (CDS) from alignment at scaffold_200:25779..30580-

>TCONS_00051309 ID=TCONS_00051309|Name=TCONS_00051309|organism=Clytia hemisphaerica|type=CDS|length=2736bp|location=Sequence derived from alignment at scaffold_200:25779..30580- (Clytia hemisphaerica)
CGAATCATCAACTGCATCCGCCCTTGTAGCATAAGATCGTGACTCAAAAT
TCAGACTTATTCTGATTGAAGCTAGAATCCACAGATTGGCAAGATACTAC
AAAACCAAAAGAGTCTTACCTCCAAACTGGAAATAGTGTTATCCTTCGTG
ATTCTCATGGTGTTGCGCAAGTCAGATATGTTACTGGAAATAAAATTCTT
CGTATCTTGAAGACTAAAGGATTGGCTCCATCATTGCCAGAAGACTTATA
CTGTTTGATCAAGAAAGCTGTCTCTGTCCGAAAACATCTTGAGAGAAATA
GAAAGTGGTTGAAATTGACATCTGAAGATGTCAAAGAACAAATCTACAAG
TTGGCTAAAAAGGGTCTGACCCCATCCCAAATTGAAAAGGTATCTCTGGA
TCCGCACTTCCATACCGAAGAAGTGTACCCACTATGGGTCGTATGCACGC
TAAGGGCGAATCATCAACTGCATCCGCCCTTGTAGCATAAGATCGTGACT
CAAAATTCAGACTTATTCTGATTGAAGCTAGAATCCACAGATTGGCAAGA
TACTACAAAACCAAAAGAGTCTTACCTCCAAACTGGAAATAGTGTTATCC
TTCGTGATTCTCATGGTGTTGCGCAAGTCAGATATGTTACTGGAAATAAA
ATTCTTCGTATCTTGAAGACTAAAGGATTGGCTCCATCATTGCCAGAAGA
CTTATACTGTTTGATCAAGAAAGCTGTCTCTGTCCGAAAACATCTTGAGA
GAAATAGAAAGTGGTTGAAATTGACATCTGAAGATGTCAAAGAACAAATC
TACAAGTTGGCTAAAAAGGGTCTGACCCCATCCCAAATTGAAAAGGTATC
TCTGGATCCGCACTTCCATACCGAAGAAGTGTACCCACTATGGGTCGTAT
GCACGCTAAGGGCGAATCATCAACTGCATCCGCCCTTGTAGCATAAGATC
GTGACTCAAAATTCAGACTTATTCTGATTGAAGCTAGAATCCACAGATTG
GCAAGATACTACAAAACCAAAAGAGTCTTACCTCCAAACTGGAAATAGTG
TTATCCTTCGTGATTCTCATGGTGTTGCGCAAGTCAGATATGTTACTGGA
AATAAAATTCTTCGTATCTTGAAGACTAAAGGATTGGCTCCATCATTGCC
AGAAGACTTATACTGTTTGATCAAGAAAGCTGTCTCTGTCCGAAAACATC
TTGAGAGAAATAGAAAGTGGTTGAAATTGACATCTGAAGATGTCAAAGAA
CAAATCTACAAGTTGGCTAAAAAGGGTCTGACCCCATCCCAAATTGAAAA
GGTATCTCTGGATCCGCACTTCCATACCGAAGAAGTGTACCCACTATGGG
TCGTATGCACGCTAAGGGCGAATCATCAACTGCATCCGCCCTTGTAGCAT
AAGATCGTGACTCAAAATTCAGACTTATTCTGATTGAAGCTAGAATCCAC
AGATTGGCAAGATACTACAAAACCAAAAGAGTCTTACCTCCAAACTGGAA
ATAGTGTTATCCTTCGTGATTCTCATGGTGTTGCGCAAGTCAGATATGTT
ACTGGAAATAAAATTCTTCGTATCTTGAAGACTAAAGGATTGGCTCCATC
ATTGCCAGAAGACTTATACTGTTTGATCAAGAAAGCTGTCTCTGTCCGAA
AACATCTTGAGAGAAATAGAAAGTGGTTGAAATTGACATCTGAAGATGTC
AAAGAACAAATCTACAAGTTGGCTAAAAAGGGTCTGACCCCATCCCAAAT
TGAAAAGGTATCTCTGGATCCGCACTTCCATACCGAAGAAGTGTACCCAC
TATGGGTCGTATGCACGCTAAGGGCGAATCATCAACTGCATCCGCCCTTG
TAGCATAAGATCGTGACTCAAAATTCAGACTTATTCTGATTGAAGCTAGA
ATCCACAGATTGGCAAGATACTACAAAACCAAAAGAGTCTTACCTCCAAA
CTGGAAATAGTGTTATCCTTCGTGATTCTCATGGTGTTGCGCAAGTCAGA
TATGTTACTGGAAATAAAATTCTTCGTATCTTGAAGACTAAAGGATTGGC
TCCATCATTGCCAGAAGACTTATACTGTTTGATCAAGAAAGCTGTCTCTG
TCCGAAAACATCTTGAGAGAAATAGAAAGTGGTTGAAATTGACATCTGAA
GATGTCAAAGAACAAATCTACAAGTTGGCTAAAAAGGGTCTGACCCCATC
CCAAATTGAAAAGGTATCTCTGGATCCGCACTTCCATACCGAAGAAGTGT
ACCCACTATGGGTCGTATGCACGCTAAGGGCGAATCATCAACTGCATCCG
CCCTTGTAGCATAAGATCGTGACTCAAAATTCAGACTTATTCTGATTGAA
GCTAGAATCCACAGATTGGCAAGATACTACAAAACCAAAAGAGTCTTACC
TCCAAACTGGAAATAGTGTTATCCTTCGTGATTCTCATGGTGTTGCGCAA
GTCAGATATGTTACTGGAAATAAAATTCTTCGTATCTTGAAGACTAAAGG
ATTGGCTCCATCATTGCCAGAAGACTTATACTGTTTGATCAAGAAAGCTG
TCTCTGTCCGAAAACATCTTGAGAGAAATAGAAAGTGGTTGAAATTGACA
TCTGAAGATGTCAAAGAACAAATCTACAAGTTGGCTAAAAAGGGTCTGAC
CCCATCCCAAATTGAAAAGGTATCTCTGGATCCGCACTTCCATACCGAAG
AAGTGTACCCACTATGGGTCGTATGCACGCTAAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032516XLOC_032516Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051309-proteinTCONS_00051309-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051309-exon-scaffold_200-1575043694:30427..30580TCONS_00051309-exon-scaffold_200-1575043694:30427..30580Clytia hemisphaericaexon
TCONS_00051309-exon-scaffold_200-1575043694:27699..27747TCONS_00051309-exon-scaffold_200-1575043694:27699..27747Clytia hemisphaericaexon
TCONS_00051309-exon-scaffold_200-1575043694:27249..27327TCONS_00051309-exon-scaffold_200-1575043694:27249..27327Clytia hemisphaericaexon
TCONS_00051309-exon-scaffold_200-1575043694:26812..26981TCONS_00051309-exon-scaffold_200-1575043694:26812..26981Clytia hemisphaericaexon
TCONS_00051309-exon-scaffold_200-1575043694:26477..26577TCONS_00051309-exon-scaffold_200-1575043694:26477..26577Clytia hemisphaericaexon
TCONS_00051309-exon-scaffold_200-1575043694:25779..25881TCONS_00051309-exon-scaffold_200-1575043694:25779..25881Clytia hemisphaericaexon
TCONS_00051309-exon-scaffold_200-1510915933:30427..30580TCONS_00051309-exon-scaffold_200-1510915933:30427..30580Clytia hemisphaericaexon
TCONS_00051309-exon-scaffold_200-1510915933:27699..27747TCONS_00051309-exon-scaffold_200-1510915933:27699..27747Clytia hemisphaericaexon
TCONS_00051309-exon-scaffold_200-1510915933:27249..27327TCONS_00051309-exon-scaffold_200-1510915933:27249..27327Clytia hemisphaericaexon
TCONS_00051309-exon-scaffold_200-1510915933:26812..26981TCONS_00051309-exon-scaffold_200-1510915933:26812..26981Clytia hemisphaericaexon
TCONS_00051309-exon-scaffold_200-1510915933:26477..26577TCONS_00051309-exon-scaffold_200-1510915933:26477..26577Clytia hemisphaericaexon
TCONS_00051309-exon-scaffold_200-1510915933:25779..25881TCONS_00051309-exon-scaffold_200-1510915933:25779..25881Clytia hemisphaericaexon
TCONS_00051309-exon-scaffold_200-1491911889:30427..30580TCONS_00051309-exon-scaffold_200-1491911889:30427..30580Clytia hemisphaericaexon
TCONS_00051309-exon-scaffold_200-1491911889:27699..27747TCONS_00051309-exon-scaffold_200-1491911889:27699..27747Clytia hemisphaericaexon
TCONS_00051309-exon-scaffold_200-1491911889:27249..27327TCONS_00051309-exon-scaffold_200-1491911889:27249..27327Clytia hemisphaericaexon
TCONS_00051309-exon-scaffold_200-1491911889:26812..26981TCONS_00051309-exon-scaffold_200-1491911889:26812..26981Clytia hemisphaericaexon
TCONS_00051309-exon-scaffold_200-1491911889:26477..26577TCONS_00051309-exon-scaffold_200-1491911889:26477..26577Clytia hemisphaericaexon
TCONS_00051309-exon-scaffold_200-1491911889:25779..25881TCONS_00051309-exon-scaffold_200-1491911889:25779..25881Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_200supercontigscaffold_200:25779..30580 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1473.33	1503.11	1689.77	1782.64	1195.72	958.665	1388.31	1451.83	2008.06	1750.31	2007.1	2411.96	3058.78	2623.97	3168.51	3178.51	2994.26	3351.71	1455.41	1773.44	3358.18	3292.67	2500.6	2420.42	2061.36	2059.69	3164.21	3184.46	1950.83	2177.23
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012606Ribosomal_S13/S15_N
IPR000589Ribosomal_S15
IPR023029Ribosomal_S15P
IPR009068S15_NS1_RNA-bd
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
[Close]
BLAST of TCONS_00051309 vs. Swiss-Prot (Human)
Match: RS13 (40S ribosomal protein S13 OS=Homo sapiens GN=RPS13 PE=1 SV=2)

HSP 1 Score: 284.263 bits (726), Expect = 1.584e-97
Identity = 139/151 (92.05%), Postives = 147/151 (97.35%), Query Frame = 3 
Query:  132 MGRMHAKGKGISGSALPYRRSVPTWLKLTSEDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRYVTGNKILRILKTKGLAPSLPEDLYCLIKKAVSVRKHLERNRKDRDSKFRLILIEARIHRLARYYKTKRVLPPNWKYESSTASALVA 584
            MGRMHA GKG+S SALPYRRSVPTWLKLTS+DVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVR+VTGNKILRILK+KGLAP LPEDLY LIKKAV+VRKHLERNRKD+D+KFRLILIE+RIHRLARYYKTKRVLPPNWKYESSTASALVA
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151
The following BLAST results are available for this feature:
BLAST of TCONS_00051309 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS131.584e-9792.0540S ribosomal protein S13 OS=Homo sapiens GN=RPS13... [more]
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