TCONS_00051272 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051272
Unique NameTCONS_00051272
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1742

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051272 ID=TCONS_00051272|Name=TCONS_00051272|organism=Clytia hemisphaerica|type=transcript|length=1742bp
GGAACCTTGAGTAAGAAGAACTATGCAATATTGTTGTTTTAAATTACTCC
AATACATTAAATAttttccctcagccaataaaaacgtaataaattatctt
gtctctaggtaactgttgTGAAGTGATTACTTATTCAATAGGCCGTCGCG
TTCTCCTAAACAAATATTGTGGCTCTCAATGGAATCTGCTGCTGAATCTT
CCTGACCATCTACCACATCAACTGATGTCTCTTTCATTGAAACACCTCTC
GTTTCTGGTAACAAAAAGCACATGATTCCGGAGAATAAACCGAGTGCACC
CATAACATAGAATGGAGACTCAGGGCTTACCTGTGTCAACCCTTTGGCTA
TCCAAGGTGCACTGGCTCCGCCTATATAAATCGCCAGTCCCAGGGTACTC
ATCGCCGCTGTCCGTATGTTAGTTGGATATGCTTCAACGATTAATGTCGA
TACACAATCAAAACTAATGGTTATGAAAAATTTCCCTAAAATTCCTAGAA
TAATacggaaaatgtttttgggtgTAAGTGAAACAGCGAGAGTCACCAAG
CCAGCTAGAGCGAGGGGAATCGTACTCGATTTCTTTCGCCCATACCGATT
ACAGATGTATGTTGCCGCTATGTTTCCTGGTATCTCCACAATGCTGATAA
GAAAGAAATTTAAGTATATAGATCCCGTACCCAGGTCGCTTGCTGCTAAC
GATATTCCAAAATAAACCAGCGAATTTGTGTACAGGCAGATAAATAGAAT
GGTAGAGGTCAAGGCCATTTTCTTGGTTCGAAACAAATCCAACGGATTTG
TTTTCTCTTTGAGTTTTGAAGCTTTTGATAAAGTGGCATTCGAATCGAAA
TCTCGTCCATTCCATTTTGCTATTAATCTGAAGATATCCAAAGCTTCATT
CGCATGTTCTTTCAACCTCAACCAACGAACTGATTCTGGTACAAAAAGGT
ATGTGAAGATCAACAGCAAATACGGTAGCGTACAAGTAATAACCAAAGTC
TTCCATGATTCAATTAAGTATGCTTGAAGCGATAAAATACACAAAGCACC
TGCGTAGAAGACCCAGTACAAATTACCAGCAAATGCTCGATGTCTGTTCC
CAACTACTTCATTGATCATTACAAAGTAGCTGGGTATTCCAAAATTCGCG
ATTCCAGCTACGAACCGGAGCGCAATAAACCAGCCTATCCCTGGTGtata
aataatcaaaaaattgGATAAAATAACCATTAGGAATAACACATAGGAAA
TTCGTTTCCGTCCATAATTATCACTGTACCAACCAAGAACAATAGCACTG
ATCAATGCGCCAATGAAAATaactgacgtcagcatattgATAAACCACGT
GTTACCGCAAACTAAATCATAATCAACTATAATGGAATATTCTTTGGGTT
TTGTGAACTCCCATTCAGATCTTTGTATCTGACAGCGAAGCGTATTCTCG
TTGGTGAATGTCCCATTAAGTTGACATACGGTACTATTGGCTACACATCT
CCACTCAGGCTCCAATGCAATGAAATACATGATGAAAGTACTTAAAGCGA
ATGGTATTTGTAGTAAACCAAATATCACATTTAACATCTTTTGATACACT
CCATATTCTCCAACCATCTTAAGAAATCCATCTACGTTCAAACCTTCTTG
TTGTTGTACTtcttcattttccatttttacTTACTAGTGTTACAATTTTT
TGGTTTCAATAataagtttgaaaatcgtctttTGAACGTTCT
Run BLAST on NCBI

protein sequence of TCONS_00051272-protein

>TCONS_00051272-protein ID=TCONS_00051272-protein|Name=TCONS_00051272-protein|organism=Clytia hemisphaerica|type=polypeptide|length=515bp
MENEEVQQQEGLNVDGFLKMVGEYGVYQKMLNVIFGLLQIPFALSTFIMY
FIALEPEWRCVANSTVCQLNGTFTNENTLRCQIQRSEWEFTKPKEYSIIV
DYDLVCGNTWFINMLTSVIFIGALISAIVLGWYSDNYGRKRISYVLFLMV
ILSNFLIIYTPGIGWFIALRFVAGIANFGIPSYFVMINEVVGNRHRAFAG
NLYWVFYAGALCILSLQAYLIESWKTLVITCTLPYLLLIFTYLFVPESVR
WLRLKEHANEALDIFRLIAKWNGRDFDSNATLSKASKLKEKTNPLDLFRT
KKMALTSTILFICLYTNSLVYFGISLAASDLGTGSIYLNFFLISIVEIPG
NIAATYICNRYGRKKSSTIPLALAGLVTLAVSLTPKNIFRIILGILGKFF
ITISFDCVSTLIVEAYPTNIRTAAMSTLGLAIYIGGASAPWIAKGLTQVS
PESPFYVMGALGLFSGIMCFLLPETRGVSMKETSVDVVDGQEDSAADSIE
SHNICLGERDGLLNK
Run BLAST on NCBI

transcript from alignment at scaffold_20:290621..292362

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051272 ID=TCONS_00051272|Name=TCONS_00051272|organism=Clytia hemisphaerica|type=transcript|length=1742bp|location=Sequence derived from alignment at scaffold_20:290621..292362 (Clytia hemisphaerica)
AGAACGTTCAaaagacgattttcaaacttatTATTGAAACCAAAAAATTG
TAACACTAGTAAgtaaaaatggaaaatgaagaAGTACAACAACAAGAAGG
TTTGAACGTAGATGGATTTCTTAAGATGGTTGGAGAATATGGAGTGTATC
AAAAGATGTTAAATGTGATATTTGGTTTACTACAAATACCATTCGCTTTA
AGTACTTTCATCATGTATTTCATTGCATTGGAGCCTGAGTGGAGATGTGT
AGCCAATAGTACCGTATGTCAACTTAATGGGACATTCACCAACGAGAATA
CGCTTCGCTGTCAGATACAAAGATCTGAATGGGAGTTCACAAAACCCAAA
GAATATTCCATTATAGTTGATTATGATTTAGTTTGCGGTAACACGTGGTT
TATcaatatgctgacgtcagttATTTTCATTGGCGCATTGATCAGTGCTA
TTGTTCTTGGTTGGTACAGTGATAATTATGGACGGAAACGAATTTCCTAT
GTGTTATTCCTAATGGTTATTTTATCcaattttttgattatttataCACC
AGGGATAGGCTGGTTTATTGCGCTCCGGTTCGTAGCTGGAATCGCGAATT
TTGGAATACCCAGCTACTTTGTAATGATCAATGAAGTAGTTGGGAACAGA
CATCGAGCATTTGCTGGTAATTTGTACTGGGTCTTCTACGCAGGTGCTTT
GTGTATTTTATCGCTTCAAGCATACTTAATTGAATCATGGAAGACTTTGG
TTATTACTTGTACGCTACCGTATTTGCTGTTGATCTTCACATACCTTTTT
GTACCAGAATCAGTTCGTTGGTTGAGGTTGAAAGAACATGCGAATGAAGC
TTTGGATATCTTCAGATTAATAGCAAAATGGAATGGACGAGATTTCGATT
CGAATGCCACTTTATCAAAAGCTTCAAAACTCAAAGAGAAAACAAATCCG
TTGGATTTGTTTCGAACCAAGAAAATGGCCTTGACCTCTACCATTCTATT
TATCTGCCTGTACACAAATTCGCTGGTTTATTTTGGAATATCGTTAGCAG
CAAGCGACCTGGGTACGGGATCTATATACTTAAATTTCTTTCTTATCAGC
ATTGTGGAGATACCAGGAAACATAGCGGCAACATACATCTGTAATCGGTA
TGGGCGAAAGAAATCGAGTACGATTCCCCTCGCTCTAGCTGGCTTGGTGA
CTCTCGCTGTTTCACTTAcacccaaaaacattttccgtATTATTCTAGGA
ATTTTAGGGAAATTTTTCATAACCATTAGTTTTGATTGTGTATCGACATT
AATCGTTGAAGCATATCCAACTAACATACGGACAGCGGCGATGAGTACCC
TGGGACTGGCGATTTATATAGGCGGAGCCAGTGCACCTTGGATAGCCAAA
GGGTTGACACAGGTAAGCCCTGAGTCTCCATTCTATGTTATGGGTGCACT
CGGTTTATTCTCCGGAATCATGTGCTTTTTGTTACCAGAAACGAGAGGTG
TTTCAATGAAAGAGACATCAGTTGATGTGGTAGATGGTCAGGAAGATTCA
GCAGCAGATTCCATTGAGAGCCACAATATTTGTTTAGGAGAACGCGACGG
CCTATTGAATAAGTAATCACTTCAcaacagttacctagagacaagataat
ttattacgtttttattggctgagggaaaaTATTTAATGTATTGGAGTAAT
TTAAAACAACAATATTGCATAGTTCTTCTTACTCAAGGTTCC

Coding sequence (CDS) from alignment at scaffold_20:290621..292362

>TCONS_00051272 ID=TCONS_00051272|Name=TCONS_00051272|organism=Clytia hemisphaerica|type=CDS|length=1548bp|location=Sequence derived from alignment at scaffold_20:290621..292362 (Clytia hemisphaerica)
atggaaaatgaagaAGTACAACAACAAGAAGGTTTGAACGTAGATGGATT
TCTTAAGATGGTTGGAGAATATGGAGTGTATCAAAAGATGTTAAATGTGA
TATTTGGTTTACTACAAATACCATTCGCTTTAAGTACTTTCATCATGTAT
TTCATTGCATTGGAGCCTGAGTGGAGATGTGTAGCCAATAGTACCGTATG
TCAACTTAATGGGACATTCACCAACGAGAATACGCTTCGCTGTCAGATAC
AAAGATCTGAATGGGAGTTCACAAAACCCAAAGAATATTCCATTATAGTT
GATTATGATTTAGTTTGCGGTAACACGTGGTTTATcaatatgctgacgtc
agttATTTTCATTGGCGCATTGATCAGTGCTATTGTTCTTGGTTGGTACA
GTGATAATTATGGACGGAAACGAATTTCCTATGTGTTATTCCTAATGGTT
ATTTTATCcaattttttgattatttataCACCAGGGATAGGCTGGTTTAT
TGCGCTCCGGTTCGTAGCTGGAATCGCGAATTTTGGAATACCCAGCTACT
TTGTAATGATCAATGAAGTAGTTGGGAACAGACATCGAGCATTTGCTGGT
AATTTGTACTGGGTCTTCTACGCAGGTGCTTTGTGTATTTTATCGCTTCA
AGCATACTTAATTGAATCATGGAAGACTTTGGTTATTACTTGTACGCTAC
CGTATTTGCTGTTGATCTTCACATACCTTTTTGTACCAGAATCAGTTCGT
TGGTTGAGGTTGAAAGAACATGCGAATGAAGCTTTGGATATCTTCAGATT
AATAGCAAAATGGAATGGACGAGATTTCGATTCGAATGCCACTTTATCAA
AAGCTTCAAAACTCAAAGAGAAAACAAATCCGTTGGATTTGTTTCGAACC
AAGAAAATGGCCTTGACCTCTACCATTCTATTTATCTGCCTGTACACAAA
TTCGCTGGTTTATTTTGGAATATCGTTAGCAGCAAGCGACCTGGGTACGG
GATCTATATACTTAAATTTCTTTCTTATCAGCATTGTGGAGATACCAGGA
AACATAGCGGCAACATACATCTGTAATCGGTATGGGCGAAAGAAATCGAG
TACGATTCCCCTCGCTCTAGCTGGCTTGGTGACTCTCGCTGTTTCACTTA
cacccaaaaacattttccgtATTATTCTAGGAATTTTAGGGAAATTTTTC
ATAACCATTAGTTTTGATTGTGTATCGACATTAATCGTTGAAGCATATCC
AACTAACATACGGACAGCGGCGATGAGTACCCTGGGACTGGCGATTTATA
TAGGCGGAGCCAGTGCACCTTGGATAGCCAAAGGGTTGACACAGGTAAGC
CCTGAGTCTCCATTCTATGTTATGGGTGCACTCGGTTTATTCTCCGGAAT
CATGTGCTTTTTGTTACCAGAAACGAGAGGTGTTTCAATGAAAGAGACAT
CAGTTGATGTGGTAGATGGTCAGGAAGATTCAGCAGCAGATTCCATTGAG
AGCCACAATATTTGTTTAGGAGAACGCGACGGCCTATTGAATAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032499XLOC_032499Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051272-proteinTCONS_00051272-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051272-exon-scaffold_20-1491911889:290621..292362TCONS_00051272-exon-scaffold_20-1491911889:290621..292362Clytia hemisphaericaexon
TCONS_00051272-exon-scaffold_20-1510915933:290621..292362TCONS_00051272-exon-scaffold_20-1510915933:290621..292362Clytia hemisphaericaexon
TCONS_00051272-exon-scaffold_20-1575043694:290621..292362TCONS_00051272-exon-scaffold_20-1575043694:290621..292362Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:290621..292362 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0694281	0.135407	0.104813	0.102544	1.87255	1.20843	3.7787	4.12253	0.955593	2.72966	1.00821	1.12514	1.6161	1.8222	1.43239	1.48076	3.6831	3.65041	1.72208	1.31291	1.07403	1.34243	0.10614	0.554855	0.397556	0.576566	1.0472	0.0677331	0.154119	0.130853
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005828MFS_sugar_transport-like
IPR020846MFS_dom
Vocabulary: Molecular Function
TermDefinition
GO:0022857transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0022857 transmembrane transporter activity
Blast
[Close]
BLAST of TCONS_00051272 vs. Swiss-Prot (Human)
Match: S22A3 (Solute carrier family 22 member 3 OS=Homo sapiens GN=SLC22A3 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 2.365e-57
Identity = 151/531 (28.44%), Postives = 250/531 (47.08%), Query Frame = -3 
Query:  214 DGFLKMVGEYGVYQKMLNVIFGLLQIPFALSTFIMYFIALEPE--W-----------RC------VANSTVCQLNGTFTNENTLRCQIQ----------------------------------RSEWEFTKPKEYSIIVDYDLVCGNTWFINMLTSVIFIGALISAIVLGWYSDNYGRKRISYVLFLMVILSNFLIIYTPGIGWFIALRFVAGIANFGI-PSYFVMINEVVGNRHRAFAGNLYWVFYAGALCILSLQAYLIESWKTLVITCTLPYLLLIFTYLFVPESVRWLRLKEHANEALDIFRLIAKWNGRDFDSNATLSKASKLKEKTNP--LDLFRTKKMALTSTILFICLYTNSLVYFGISLAASDLGTGSIYLNFFLISIVEIPGNIAATYICNRYGRKKSSTIPLALAGLVTLAVSLTPKNI--FRIILGILGKFFITISFDCVSTLIVEAYPTNIRTAAMSTLGLAIYIGGASAPWIAKGLTQVSPESPFYVMGALGLFSGIMCFLLPETRGVSMKETSVDV 1632
            D  L+ VGE+G +Q+ + ++  L  + FA     + F+  +P+  W           RC        N T     G    E   RCQ                                    R  W + +    +I+ ++DLVC N W +++  +++ +G L  A  LG+ +D YGR  I  +  L V ++  ++ + P    F+  RF+ G+   G   + +V++ E+VG++ R   G +  +F+   + IL   AY I +W+ + +  TLP  L +  Y  VPES RWL  ++  ++AL I R IAK NG+   SN +    +  +E +NP  LDL RT +M   + IL    +T+++VY G+ +    +G G++Y++FF+  +VE+PG +       R GR+        +AG+  L  +  P+ I   R  +  LG+  IT++F+ V  +  E YPT +R   +S        GG  AP++   L  V  E P  + G L    G +  LLPET+G+++ ET  DV
Sbjct:    5 DEALQRVGEFGRFQRRVFLLLCLTGVTFAFLFVGVVFLGTQPDHYWCRGPSAAALAERCGWSPEEEWNRTAPASRGPEPPERRGRCQRYLLEAANDSASATSALSCADPLAAFPNRSAPLVPCRGGWRYAQ-AHSTIVSEFDLVCVNAWMLDLTQAILNLGFLTGAFTLGYAADRYGRIVIYLLSCLGVGVTGVVVAFAPNFPVFVIFRFLQGVFGKGTWMTCYVIVTEIVGSKQRRIVGIVIQMFFTLGIIILPGIAYFIPNWQGIQLAITLPSFLFLLYYWVVPESPRWLITRKKGDKALQILRRIAKCNGKYLSSNYSEITVTD-EEVSNPSFLDLVRTPQMRKCTLILMFAWFTSAVVYQGLVMRLGIIG-GNLYIDFFISGVVELPGALLILLTIERLGRRLPFAASNIVAGVACLVTAFLPEGIAWLRTTVATLGRLGITMAFEIVYLVNSELYPTTLRNFGVSLCSGLCDFGGIIAPFLLFRLAAVWLELPLIIFGILASICGGLVMLLPETKGIALPETVDDV 532
The following BLAST results are available for this feature:
BLAST of TCONS_00051272 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S22A32.365e-5728.44Solute carrier family 22 member 3 OS=Homo sapiens ... [more]
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