TCONS_00051268 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051268
Unique NameTCONS_00051268
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length506

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051268 ID=TCONS_00051268|Name=TCONS_00051268|organism=Clytia hemisphaerica|type=transcript|length=506bp
TTCATATGTTATTTCCATTTTTAGTTTGAATAATAGAAGAATTCAAATTA
CAACAAGGAGGGTTGGTTGTATTTTATCATAGTTCGACCTCCACTATTGT
AACTTCAGTTTTAGTGCGTTCTCTATCGCTATATCCTTTCAAATCAAACC
CAAATATACATCTTACTGTTTTTCTCGTCTCTTTTGACCAAaacaaataa
atcaaaacatctATAATTGGATTTAAATATGCCAAAAATCCTAAAATATT
GGTCAATAATATCGATTCGTAAActtcaaatttggctaaataaAACGATG
AAAGAAACGGTACCCAGAGCAAAACGTACGTCAGTGTCATTAAGGCGCAT
ATTGTAAATGACCGTCTTTGAATTCCTCGACGCCGGTCTTGTACTTCCTG
CGACTTGTAGTTTTCTGGAAACTTTTCTGGGAGACTGCAACGTGTCATTG
CAATTTGTTTCGCTTGTCGCCTCACTATCCTGTATAGTAACAGATTACAT
ACTATG
Run BLAST on NCBI

protein sequence of TCONS_00051268-protein

>TCONS_00051268-protein ID=TCONS_00051268-protein|Name=TCONS_00051268-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
IVCNLLLYRIVRRQAKQIAMTRCSLPEKFPENYKSQEVQDRRRGIQRRSF
TICALMTLTYVLLWVPFLSSFYLAKFEVYESILLTNILGFLAYLNPIIDV
LIYLFWSKETRKTVRCIFGFDLKGYSDRERTKTEVTIVEVEL
Run BLAST on NCBI

transcript from alignment at scaffold_20:234398..234903

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051268 ID=TCONS_00051268|Name=TCONS_00051268|organism=Clytia hemisphaerica|type=transcript|length=506bp|location=Sequence derived from alignment at scaffold_20:234398..234903 (Clytia hemisphaerica)
CATAGTATGTAATCTGTTACTATACAGGATAGTGAGGCGACAAGCGAAAC
AAATTGCAATGACACGTTGCAGTCTCCCAGAAAAGTTTCCAGAAAACTAC
AAGTCGCAGGAAGTACAAGACCGGCGTCGAGGAATTCAAAGACGGTCATT
TACAATATGCGCCTTAATGACACTGACGTACGTTTTGCTCTGGGTACCGT
TTCTTTCATCGTTttatttagccaaatttgaagTTTACGAATCGATATTA
TTGACCAATATTTTAGGATTTTTGGCATATTTAAATCCAATTATagatgt
tttgatttatttgttTTGGTCAAAAGAGACGAGAAAAACAGTAAGATGTA
TATTTGGGTTTGATTTGAAAGGATATAGCGATAGAGAACGCACTAAAACT
GAAGTTACAATAGTGGAGGTCGAACTATGATAAAATACAACCAACCCTCC
TTGTTGTAATTTGAATTCTTCTATTATTCAAACTAAAAATGGAAATAACA
TATGAA

Coding sequence (CDS) from alignment at scaffold_20:234398..234903

>TCONS_00051268 ID=TCONS_00051268|Name=TCONS_00051268|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at scaffold_20:234398..234903 (Clytia hemisphaerica)
ATAGTATGTAATCTGTTACTATACAGGATAGTGAGGCGACAAGCGAAACA
AATTGCAATGACACGTTGCAGTCTCCCAGAAAAGTTTCCAGAAAACTACA
AGTCGCAGGAAGTACAAGACCGGCGTCGAGGAATTCAAAGACGGTCATTT
ACAATATGCGCCTTAATGACACTGACGTACGTTTTGCTCTGGGTACCGTT
TCTTTCATCGTTttatttagccaaatttgaagTTTACGAATCGATATTAT
TGACCAATATTTTAGGATTTTTGGCATATTTAAATCCAATTATagatgtt
ttgatttatttgttTTGGTCAAAAGAGACGAGAAAAACAGTAAGATGTAT
ATTTGGGTTTGATTTGAAAGGATATAGCGATAGAGAACGCACTAAAACTG
AAGTTACAATAGTGGAGGTCGAACTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032495XLOC_032495Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051268-proteinTCONS_00051268-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051268-exon-scaffold_20-1491911889:234398..234903TCONS_00051268-exon-scaffold_20-1491911889:234398..234903Clytia hemisphaericaexon
TCONS_00051268-exon-scaffold_20-1510915933:234398..234903TCONS_00051268-exon-scaffold_20-1510915933:234398..234903Clytia hemisphaericaexon
TCONS_00051268-exon-scaffold_20-1575043694:234398..234903TCONS_00051268-exon-scaffold_20-1575043694:234398..234903Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:234398..234903 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.116486	0	0	0	0	0	0	0.201323	0	0	0	0.15889	0	0	0	0	0.0919124	1.65076	0.664387	0	0	0.136963	0.124519	0	0.114462	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051268 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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