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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051234 ID=TCONS_00051234|Name=TCONS_00051234|organism=Clytia hemisphaerica|type=transcript|length=1176bp
ATAAATTTTAAATACAAAATGTCAAGTTATCGTAATCGGAATAGTAAAAG
ACCCAAAACGTATTATTTAGGGAGATCAACACCAGCTACAATGTATGATT
TAATAGATCATTGTCATGAATACGAATCAGGGATGCGATTTCACGATCAA
GGTGGTGAAAATGATTATCAAGATGGATTCTGGAAAGTGTTCATGTTAAA
CGAGAAACCTGGTAAAGCAACACGTTGTTGTGAGCGTTCATCTTCCTTTA
ACACGCATGGATACCAAGATTCCAAGATGGCGGACGTTGCTACGGCGGAA
CCATGTTCAGCTTCGTGTTATTGTATGAAACATTCAAAAACAGCAAGAAG
GAGACGTTTTAAGAGCCAATCAGGATACTATTTGGCAATAATGCCCAATG
GACAGATAATGGGGATCAAAGATAAAAACAGCCCTTACATTGATATAGAC
GTGATACCAGTAGGTGCAGATTTGGTCAAAGTATGGGGTGTGGAATCAGA
GCTATTTCTTATGATTGACGATCAAGGACAAATGAGAGGCACTgatgTTG
ATAGCGCGGAATGTATCTTCGAAGAAACGTTAAcagaaaactttttcaat
gtcTACTACTCAGCTATGTATTTGAATAAAAGATGGTGCATAGGATTACG
TAATAAACAACAAACCAGGAGTTTTTATCGGAAACCGAAACCTGCAAAAG
ACACTTCTTTTATGATTGAGATTGTACAGCGAAGAGCTTCAACCTCATCC
GCATGCGATAGTGATGATAGTCGCGTCAGCTCTATTTGATGAGCGCGGAA
AAGTGAGAATTGAGAGCAGGGGATTTCATTGAAACCTTCTTGATGGAGAG
AAGTGTTTATGGGTTTAAAATGAAAGGAATGGAGCTTTGATTTGGTGCGA
TTTGTTTGGAATCGTTACCGTTGGAAACCATCTAGACACACCTGGTGAAG
AtggtaccattttgaatttttgatccatTGCCGCGCCGTTTGGCAAAAAA
CTATTTTAAACATTTGTCACTTTGGGGACACAAACACAAGATTAATATTA
CAAATAAAGATTTAAAGaaatgaacatttttaaaatctcATTTTATTTGG
AATTGTGGTAATCAGTAACAGgattttatgttattttttgcATTGTTAAC
GTCAGGATACGAGACCGAATTTCCAC Run BLAST on NCBI transcript from alignment at scaffold_20:118552..126663- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051234 ID=TCONS_00051234|Name=TCONS_00051234|organism=Clytia hemisphaerica|type=transcript|length=8112bp|location=Sequence derived from alignment at scaffold_20:118552..126663- (Clytia hemisphaerica)
ATAAATTTTAAATACAAAATGTCAAGTTATCGTAATCGGAATAGTAAAAG
ACCCAAAACGTATTATTTAGGGTAAGTAAATACTTTACTTTCTCAAGAAC
TTTCGTTTTTAAATCTCAAATCAATATAAAGTGTGTATTACATACCGTTC
GAAATGGAGTTCCGGTGAGTTTTCCGGATGCCGGTTTTAAAATACAGAAT
TTTACGTCCCTTTTTAAAAAATTAACTAACGGTACTTGAAAGCTTAGAAC
TAAGATTGAAGAGAGTAAGTGGATAGTGATATTAAAGGGTGTTTCAATGA
TAAGTATTCATGATATTCATGACGTAATGTTTTCTACGGAAAGACCCCGG
TTTATGCCAGTAGTGGCTAACTTTATACAACTTTTGTCTAGTTTGAAGTT
GCCACTACTGGCTAAAACCGCTGAAAACCGGGGTATTTCCGTAGAAAACA
TTACGTCATGAATATCATGAATAGTTGGTCCAATTGGATCAGTGATACAG
GGTTTCTTTCAGGGCCAAAAAATTTGGCGGTTCGTCGGTTGATCACCTTT
TAATAATTTGAGTACTTTCTTAAAAAATGCTTCTGTCATCTTCTGTTTTA
AAAGTGCATAAATAAATTTAAAAATAAATGATCGTAAATTTACGATTTTA
GGCCGTTAAGTAGGTGAATCTACGACAGCAGTCAAAAGACGACACGAAGG
CTCCTTTTTCGATCGATATCTACCCGAAAAAAGGGGAGGGTGCCACCATT
TTTCCCTGGATTACCCTTACCCTTTATCCTTTTCTTAATGTCTTCAGCAT
TGCACCAATCACCAAATGTCTTTTACTGGGATTACTTCATAGTTAAACTT
CTATGGAATTTTTTAATATTCCATCTGGTAAACCATTTTATTTCTCTTTA
AAATGATTGCGGTCAAATCGGTGAGCTTTTATCATAAAATGACCAGTCGA
TTAAAAATTCCATACAATACCTTCTAATAGCTTTTAATTCCATATTTTTC
TTTCCTTTTTTGTGTTTGTTTTGGTTTGGTTTGTAATAATTTCCAATACT
TAAAAAGTTAATGGTATCAAAATGTCGTCAAGTCTACCTCTTTGATTTGA
ACCGCTTCTTTAGTAAAAAATATTTGATGAGTTTGATACATAATAATGCC
ACAACAAAATTGTCTCTACCTGGATTGACAGTTCCAGTCTACAAGAACTT
TGATGTTACATTTTAAACTAATAAAGACTAGTATTTTGAAGTCCTGCTGT
CCTTTTTGGTATTTTAACATGTCGCTGCCCATTGTGCTGTATGTCCGTTT
TTGATGAAGTAGCGCTTTGTCGATTCAAGTTTATTTTAGAAGAAATGGCG
CCTTGCTCACTTTTGAGTCGCTTGGCATTCACGCCCTACGGGCTTCTTGT
TTTACTTAGGTCCAAATTCAACTTTTAGGACTAGGATATTTTTCATACTT
TAAACGACTAGACCAATTAGCAATTCTCGATAACAAATATTTTAGCTCAT
CGTTCTTATTTCGCAAAACAATAAGGTTATTCATCACCAGTTCAAAACAA
ACTTTCTGATAATGTGACTCATTTGTCAATGACTTGCTGATTGTGTCATC
ATTATACGTTTGTTTGTTATACACACTCTTATTAGCCTGTAGCTAACCTG
ATAACAGATGTTCATAATTTTCTTACGCGCACGGTAAACCTCTAAAGGCA
CTTGAAAATTATACATCTGAGGAAAATAGTCCTCCCGCGGAAAATTCTAC
AACAAGAATTTTGTTGTGCGCCGGAAAAAATAAAAACTAATACGGCGCCC
TATTCATAAACACAATCGCGCAACTTTGTTGTCATTCCCAGTCCTTTTAG
ACGAACGCGGTCCTTACGATTTCGAGATTGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGATTTCGAGATTGCATATTCGTCAG
ATTGTTTGTTTTCACACATCCCTTTAGAGCTTCAGCGTGGTGTGCAGAAA
ACATTCACAATCTGATCTCAGGTTACCTGTAGCTCGATGATGGACATATT
CGATAAGAACGACGAGATACAAAGTATTCCACATTGTAATCAACAAGATT
AGTTGTTATTCGTATACAAGTTTAAGTTGTATTGGAAGTTTATTGTGTGA
TTTACGTTTCACTTAAAATCAAACTTGGTTGAAAGCCAAACGTAAATCGT
GTGATCCAAGCCACAAAAGACTTCTAATATGAATATTACTGGGTCGATAA
ACTCAAACTTAAGTTTAAGTTGTATTTACTAGAAAGCTTAGGATGGTATG
GTTAACTGTGGTATTGTCCGGTAAAAAATTTATACATAGCGGCCAGCAAA
GTGATTTGGTGAATGGATGATTTCTTAATAAAATTGGTCGATCGGAATGT
TTTCAAAGAATTTTACAGATTGTTAATCTCCAATGTTTATGTTTAACTCA
TTTCCAATCCCTCAAGAATACATTTAGATCAGGAAATTTCTTCTTTTCAG
CCTATATTTTCCTTTATATACGTTTTTTTTTTTAATTGGAAATTCAAATT
TTTGAAGCCTTCGGATGTTCTTAACATGTTCTTATTTTGACCAATTTGCG
AACTATTTTTGACCATTTTCCTAAGAAATAGGGTGTTTTTGAGTCCACTA
AGCCTTAAAATGTTCTTAACTTGATCTTAACATTTCGGCCATTGAAGCCT
TGTGTTCTTATAGTTTGTTCTTATGAGAAAAAAAACGTGTAGCCGAACAT
TCTGAAGTTTTTGATTTCCCTTCTACGACGTTAAATCAAAAGTTGATAAT
TTCCTTTTCTCTGGATTGGATATCTAATCGTAGACATATTAAAAGCTCGG
AAGGAAAATAAAAAGATAGAAATCAAAATATTTGAATTGTAAACCGTTTT
GATGATCCGGAGGCATCATTCAGGTTTTTGATTTCTGGTCGGGGAAGGAA
GATCATTTTATTTTGTATGTTTTGACAAAATGTTCATCAAAATACAGACC
GATAGCTGCAATTTTATCTAGTTCCTTAACCATTGAGTATTTGACTGTAT
GGTTCTTAGGAAAACATGAGAAATGGTAAATCTTTAACTGGGGAAACTTT
AGTATTCGCTTTTAATATTATTATGATAATTCGGATGACTTCAAAAAACT
TTTATATTGTCCTTAAACTCTATGATGCATTTTAAAATGTCTTTTTTTTT
TTTCAAATTTACATTTTCTGTGCAATTAATGAAATCTTTGCCACCTGATG
ATTTGACATCAATTAAAAGAAACAGGGGGGAGATCATAATATTCGTTAAT
GAGATTATATGATCAACACACCATTTTATAATACCATGATGCCAATTAAG
AGGGTTGTGTTATATCATTGAGAGACATCGTCAGCATTTGCTTGTATAGA
AGCCGTATATTTTGCTAGCAGGGTTAAAACTCAGCTTTGAAGGTTTTGTT
TTGAAAACCTTTATGGCTGTGTATGCTTAAAATTTCTGTCTTCAATGTTT
TATGAAATTGAATATTATGGTACCTATTTTTCATTTGACTTTTCAAAAGT
ATTTTTGGATGAATTTGAATTTTTTGATGAGGTTTTGGTCTAGAACACGA
CTTTTCAAAACAAAGCAGCAACTAGGCTTTTCTAAATGTTTTATTGTTGA
TGTGTTTTATATTGTTGATTGGCTTTGGATTTGGGAAATTCCTTTCCTTT
TTAGTTAGAGTCCTACTATATACATTTTCAACTAGTCTTTACAACCTACA
AGATTAGTCCTAGGAACTAACACCTTTTTTAAACATAAGCTTTCCTCTGT
TGTTGAGTTTGAATCTTTTTTTGCCAATCCTAGGACTTTAAACTTTTTGT
ACAAAGTATTAAACTATATAAAAGAAGATTTCTGGTTTTCATAGATGAGC
TAAAGTCAAAAAATGGTGGTTTTCTTCACCAGCTTATCCTGGTGGATTTT
CAGATCAAAATTTAGTTCCTTACATTGCTAATCTGTTCCTTAGTAGATGA
AAAGAATAACTGTTGTTGAAAAATGTTTTTTTCCGAAGTTTTTATCTTTG
CTATAGTCTAAAGATGGTCTTTCTCTAAAGGATTAGATTGTTAGTTTCAG
CTTTTGGCTTAGTTCGTTTTGAATCTTTCTGCCAACGTTGATGGGCTCTC
GTTTATGTCGTGAGTATCCTGTAGCGGATAGAATTGGTTTGATTCAATAT
TCTTCTTTTTCTTGATACAGGCTATTTTATGTTCTTTGGATCCTTAATTA
TTGGAAGATTGCCAATAAAACTCTATTTTGGATTTTTTTTTGTTTTAAAC
GAAAGCCTCATTAACTACTCAACAGTTTCGTTGAAATTACCTGAGCTTCT
CTCATGATATAAATTTTTTTTGATGAACTAATCGCTTTTTATGTGTATAG
TATGTGAGGTGTGAGAGAGTTTGATGGAAAATGACTGTGTCCAAAAATAC
TGATATGTTTGACCTCAGTATGTTATGTTAGTGAGTGAAGGTGAAAAAAC
CTCTAGTTTTTGAAAATTAAATCTTTACCATATATAAGTCAGTCTTGAGC
AGCTTTTAAAACTAACGTAGTTAGTTTTTAGGATTTTTTTGGTTAATATA
AAGAATTGACCGGATTTTAAATGATATATTTTTGTTCGGGGTTTTATTGT
CGTGATTTTCTGATTCGCGCACATTCACTAGAAATCATTCTACAAAAACA
CCGTTGATTTGAATATATGTGCCTTATTCATAGATGATATCGTAGTAGCA
TTTTATTTAGCCTTTTAAAAATTTCTAAAAATGAATAATGATATCATTTC
ATTTCATTTCAGTCCACATTTAAAAAAGAATCACCAAATTTTTTGACAAT
CTGTCAATCTAATGAAAATGTCAGTCTACCTCTTGGACCTTTATTATGAG
ATGTCAAAATCATAACTTTTCTTAATGAGTAGATATTTGTCTCTTTTTGC
GCTATTGTCTGTACTGATTACTTGTGGTTTTTGCGCTTTGTTTTGATAAT
TGACTTTGAGGTATTTTTACAGTATACAATCAACGAACACAAAAATTCGT
CTCAAATTAAATAGAGAGAGAAGCTACACTTGTCATTTGAATAAGGACTT
CAGATAGAGGCGGTTGCCAGAAAACATATTAAAAAATTTATCTGGAAACG
TGGTCAAAAATAGAAAATGAAAGCAGCGGTTACGAATTTATTTTCCAATC
CTTCACCCCGTAGGAGATCAACACCAGCTACAATGTATGATTTAATAGAT
CATTGTCATGAATACGAATCAGGGATGCGATTTCACGATCAAGGTGGTGA
AAATGATTATCAAGATGGATTCTGGAAAGTGTTCATGTTAAACGAGAAAC
CTGGTAAAGCAACACGTTGTTGTGAGCGTTCATCTTCCTTTAACACGCAT
GGATACCAAGATTCCAAGATGGCGGACGTTGCTACGGCGGAACCATGTTC
AGCTTCGTGTTATTGTATGAAACATTCAAAAACAGCAAGAAGGAGACGTT
TTAAGAGCCAATCAGGATACTATTTGGCAATAATGCCCAATGGACAGATA
ATGGGGATCAAAGATAAAAACAGCCCTTACAGTAAGTCCCCTATCATTTT
CTACTGTATTCTCTTTCAGTATTTTTTTGGTGAAAAGTCAATTGGAGTAG
TAAATTCGTTATAATATGTTAAAAATCTTTGTGGAGTTTGTCTTGGGTCA
TCATTTTTAAATTAGCGACTCTGATTTTTGGCAAAGTTCTCTAAAATGAT
ATTAAAAGAATTTTATTTGACATAAATTCTTTCCAAAATAAAAACGATGA
TTTCTCAACGTTCGTATTGTGAAACAAGATGCTTGCTAGCGGAAATCTAG
CCCCTTGAAACACGCACAATGCAACGGAAAAGAACAGTCAATGTACTCAA
AAGCATAGCATAAAAGAAAAATAAGACGATCTTTGACAATCTGTCATTAA
AATGTTGTCATACTCCCTTAACACTTGATGCTTATGACATAATGTTTACT
TGCTGCCATTACAGAAAGAACTGTGGAGCTTCTAAGTGGACCCTTCTCAA
TCTTACTTCAAGTATTTTCACTTGAATCTTTTATGAAACAAAAGCATTTT
TTCTGAAATTCTTTCTTTTGAGTACCCTCTTCTAAAAAAAAGGAAAATTT
TTGAACCGTTACCATGAGCTTGCATTCTTTTAAAGCAAAATACTCCAATA
ATTACTAAAATGTATTGCCTGTAACTACCTTTGCTTTAAGACTACGAAAA
AGAAATCACTAAAAATTCCAAACTCCAAATTATTCATTCTATAAAGCAAA
GTTCACGAAATCATAGATTTCGTCCATTTTTGACTGTCACCTTATAGCTC
TGCATATAATGACCTTCTAATCTCTCTTTTTTTCTCTATTTTAAAGTTGA
TATAGACGTGATACCAGTAGGTGCAGATTTGGTCAAAGTATGGGGTGTGG
AATCAGAGCTATTTCTTATGATTGACGATCAAGGACAAATGAGAGGCACT
GTAAGTATTTTTGTTTTTTTTTGCATTTTAGTGCCCTTCTTTATCCAATG
ATATACAAAAATCGATGGAATTAATTAAGAAAGTACAGTGATACAATCCT
AATGCTGCACACTGGTGGATTTAAGATAATAGAGGAAGTGCGTCGGAAAC
ATGCGAAGGAGTCCAACGCTCGTTAAAAGACAATGTTAAATTACAATCAA
AAATCTCTTCCTCTGATAAGGTCGACTTAGTCCAAAACCACCTATGACTT
CAAACGGTTTTGTGGTACCCTCAGCCTTGTGGTGTGGGATGGTGTTTTGT
GAAAACTGATTTTTCCCACAAATCTCTTTACATTTTATCTCTATAATAAC
AAGATTTTTAAATTAAGAATTTTGGTGTTACATAATTCCTTGATCGTATC
AAAAATCAAAATGAATTGCCTCCTTCAATTAATTACATTAAGTTACAAAG
ACTGCACTCATCGTGGAAATTTTGTTCCCTTTTTTTAATAGGCTTTCTTT
TCAAAGTTGTAAACTTGCTAATGCGTAATGGGTTTATTCCATGAGGTGTT
TATCGGTTTAAAAATATGAAAAAAAACCTAAGAAAATGACCGGCGATGAC
TTTATTCATTGAACATAATAGGCTGCAAGACCTCACCAAAACACTCGGGA
CTTTACATGAACAGACCGTGCTGATTTTGACTTTTTAAAATGTAATTTCC
ATTCTCTGTAAATAACCGAAATCTCAATACAGGGTCGAAAGTTCTCCCGA
AATGCGATTACCATTTTAAATGAGCGACACCAAAAAGTTAAAATCAGTAT
GAGATTGCCATGTAAACCAGCCCTTAGATGGGGCCCCCTTAGATATGCGT
TATTTTAAGACTCTTGTTAGATTGCAAAGAGCTCATTTTAAAGAACTTTT
TTTGAGATTTTCAATTTTTCATTTTTCAGGATGTTGATAGCGCGGAATGT
ATCTTCGAAGAAACGTTAACAGAAAACTTTTTCAATGTCTACTACTCAGC
TATGTATTTGAATAAAAGATGGTGCATAGGATTACGTAATAAACAACAAA
CCAGGAGTTTTTATCGGAAACCGAAACCTGCAAAAGACACTTCTTTTATG
ATTGAGATTGTACAGCGAAGAGCTTCAACCTCATCCGCATGCGATAGTGA
TGATAGTCGCGTCAGCTCTATTTGATGAGCGCGGAAAAGTGAGAATTGAG
AGCAGGGGATTTCATTGAAACCTTCTTGATGGAGAGAAGTGTTTATGGGT
TTAAAATGAAAGGAATGGAGCTTTGATTTGGTGCGATTTGTTTGGAATCG
TTACCGTTGGAAACCATCTAGACACACCTGGTGAAGATGGTACCATTTTG
AATTTTTGATCCATTGCCGCGCCGTTTGGCAAAAAACTATTTTAAACATT
TGTCACTTTGGGGACACAAACACAAGATTAATATTACAAATAAAGATTTA
AAGAAATGAACATTTTTAAAATCTCATTTTATTTGGAATTGTGGTAATCA
GTAACAGGATTTTATGTTATTTTTTGCATTGTTAACGTCAGGATACGAGA
CCGAATTTCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051234-exon-scaffold_20-1575043694:126593..126663 | TCONS_00051234-exon-scaffold_20-1575043694:126593..126663 | Clytia hemisphaerica | exon |
| TCONS_00051234-exon-scaffold_20-1575043694:121033..121400 | TCONS_00051234-exon-scaffold_20-1575043694:121033..121400 | Clytia hemisphaerica | exon |
| TCONS_00051234-exon-scaffold_20-1575043694:120114..120217 | TCONS_00051234-exon-scaffold_20-1575043694:120114..120217 | Clytia hemisphaerica | exon |
| TCONS_00051234-exon-scaffold_20-1575043694:118552..119184 | TCONS_00051234-exon-scaffold_20-1575043694:118552..119184 | Clytia hemisphaerica | exon |
| TCONS_00051234-exon-scaffold_20-1510915933:126593..126663 | TCONS_00051234-exon-scaffold_20-1510915933:126593..126663 | Clytia hemisphaerica | exon |
| TCONS_00051234-exon-scaffold_20-1510915933:121033..121400 | TCONS_00051234-exon-scaffold_20-1510915933:121033..121400 | Clytia hemisphaerica | exon |
| TCONS_00051234-exon-scaffold_20-1510915933:120114..120217 | TCONS_00051234-exon-scaffold_20-1510915933:120114..120217 | Clytia hemisphaerica | exon |
| TCONS_00051234-exon-scaffold_20-1510915933:118552..119184 | TCONS_00051234-exon-scaffold_20-1510915933:118552..119184 | Clytia hemisphaerica | exon |
| TCONS_00051234-exon-scaffold_20-1491911889:126593..126663 | TCONS_00051234-exon-scaffold_20-1491911889:126593..126663 | Clytia hemisphaerica | exon |
| TCONS_00051234-exon-scaffold_20-1491911889:121033..121400 | TCONS_00051234-exon-scaffold_20-1491911889:121033..121400 | Clytia hemisphaerica | exon |
| TCONS_00051234-exon-scaffold_20-1491911889:120114..120217 | TCONS_00051234-exon-scaffold_20-1491911889:120114..120217 | Clytia hemisphaerica | exon |
| TCONS_00051234-exon-scaffold_20-1491911889:118552..119184 | TCONS_00051234-exon-scaffold_20-1491911889:118552..119184 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_20 | supercontig | scaffold_20:118552..126663 - |
Blast
BLAST of TCONS_00051234 vs. Swiss-Prot (Human)
Match: FGF12 (Fibroblast growth factor 12 OS=Homo sapiens GN=FGF12 PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 4.305e-19 Identity = 46/151 (30.46%), Postives = 81/151 (53.64%), Query Frame = 1
Query: 319 YCMKHSKTARRR----------RFKSQSGYYLAIMPNGQIMGIKDKNSPYIDIDVIPVGADLVKVWGVESELFLMIDDQGQMRGTDVDSAECIFEETLTENFFNVYYSAMYLNKR----WCIGLRNKQQTRSFYRKPKPAKDTSFMIEIVQ 729
+C + RRR R SQ GY+L + P+G I G KD+NS Y ++IPVG +V + GV++ L++ ++ +G + +DV + EC F+E++ EN++ +Y S +Y + W +GL + Q R K + F+ + ++
Sbjct: 54 FCSGRKRPVRRRPEPQLKGIVTRLFSQQGYFLQMHPDGTIDGTKDENSDYTLFNLIPVGLRVVAIQGVKASLYVAMNGEGYLYSSDVFTPECKFKESVFENYYVIYSSTLYRQQESGRAWFLGLNKEGQIMKGNRVKKTKPSSHFVPKPIE 204
The following BLAST results are available for this feature:
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