TCONS_00051230 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051230
Unique NameTCONS_00051230
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1616

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051230 ID=TCONS_00051230|Name=TCONS_00051230|organism=Clytia hemisphaerica|type=transcript|length=1616bp
ttataCAGATTTCACAATAAACAAAACAGTAAATCAAAAACAAACACATA
GTacaacaaaaatgaagaaactttaaaaaaaatctaacatGATGGGTAAA
CGGTATATACGAGAATGATGAGGGAATGATGGTTTATATATAAAAAGACT
TTACACCGATCATAAAATATATCCCTATCATTTCTCACATACAACCGAAT
TTGATTGGTTGTTATTGCTGTTACTATGGAAACCGAAGATGCAAGCGATG
ACTTCATGGGCGGCTACTATCAACCACCACCACTATCAATGAGTATGGCA
ACTTCTAGTTATTCAAATGTTGGTCATGGTCAAGGAACATCATCGTCAGG
AGGAGCTTCAAACATgaGCTCTTTACCGTCAACGTCCTCATCATCCAGTA
GATCTGCACCAATGGAAAGTATTGAAGACATTCTATCAAGTAGCAAACTA
CTTTTCATTCTCAGAGGTTTACCAGGCAGTGGGAAAACTACGAGAGCGAT
GGAATTGACGAATGATGCAACCTTGGGTGTGATTCTGGCTACTGATGACT
TCTTTACGAAAGATGGCGTTTACACATATAACAAGAAGATGATTGGAAAA
GCACATCAGTGGAACCAAGAAAGAACAAAATTGAGCATGGAGGCATGCAT
CACACCAATTTGCATCGATAATACAAATACTCAAAAGTTTGAAATGAAAC
CATACGTTTTGATGgctGACAAATACGGTTATCAAGTGAGTATAGTTGAA
CCGACAACAGACTGGAAATTCACCGTTGAAACCTGTCTACAAAAGTCTTC
AAAGAATCAAACATTGAAAGTGGATGATCTCAAGAGGATGAAGAAACGAT
ACCAAAGGAACGTCAAACTCGACGATATCAGAAATTGTGAGAATCCTtat
cagaaaaagaaaaaaagttctcCGGTTTCAGAAGATTAGTCCTCGATACT
TCCCGATGCAAAACCCTTTGAGCAAAAGTTTTGAAGGCAACGTGAACAGA
ACGTAATCGAGATATTGTAAGtcatatttcgttgtttttttacACCATAA
TGTTCTTATTTACGTGCAGTAGATTAATTGAATTTTACCATACTTTTTAT
ATACATATTCTAATTTATTATATATGTAATGCTATATCATCaatcttttt
taaaatattatacATTTGGTATTAGTAATTTAGTATAGTCATTTTACCAT
TTAATTTTAATTCGAGTCTCTCATCAGGGAACCCTTTCTAGGAAGTTTAA
CAGAAATCAAAGTTGAATTCAATTATGGTGATcgaatctaaaaaaaaact
aaatcgATTAGTAATCATTACAAAGTCTTGCCTTATATGATcgatctgta
aaaacaaagaCTTGTAATGACTGATCTTTAAATTTGAGAATATTATGTAG
GACATTTCCAGGACCAGACTCTCCATTAGAGTTAAAATCTAAAACGATAA
CACGGTCgaaatcaagattttttctCTTCTTGTCCTGAACATGTTTTCCT
GTCCTCTttttgttcttaagatttttgaTGGCTAAAGGATTTCAATTTAT
ATTCATTATATTCATCATCTATTTACTTTTTTGTACAGTGAtgtaaataa
aacattttcgaTCGTG
Run BLAST on NCBI

protein sequence of TCONS_00051230-protein

>TCONS_00051230-protein ID=TCONS_00051230-protein|Name=TCONS_00051230-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
METEDASDDFMGGYYQPPPLSMSMATSSYSNVGHGQGTSSSGGASNMSSL
PSTSSSSSRSAPMESIEDILSSSKLLFILRGLPGSGKTTRAMELTNDATL
GVILATDDFFTKDGVYTYNKKMIGKAHQWNQERTKLSMEACITPICIDNT
NTQKFEMKPYVLMADKYGYQVSIVEPTTDWKFTVETCLQKSSKNQTLKVD
DLKRMKKRYQRNVKLDDIRNCENPYQKKKKSSPVSED
Run BLAST on NCBI

transcript from alignment at scaffold_20:66807..73319-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051230 ID=TCONS_00051230|Name=TCONS_00051230|organism=Clytia hemisphaerica|type=transcript|length=6513bp|location=Sequence derived from alignment at scaffold_20:66807..73319- (Clytia hemisphaerica)
TTATACAGATTTCACAATAAACAAAACAGTAAATCAAAAACAAACACATA
GTACAACAAAAATGAAGAAACTTTAAAAAAAATCTAACATGATGGGTAAA
CGGTATATACGAGAATGATGAGGGAATGATGGTTTATATATAAAAAGACT
TTACACCGATCATAAAATATATCCCTATCATTTCTCACATACAACCGAAT
TTGATTGGTTGTTATTGCTGTTACTATGGAAACCGAAGATGCAAGCGATG
ACTTCATGGGCGGCTACTATCAACCACCACCACTATCAATGAGTATGGCA
ACTTCTAGTTATTCAAATGTTGGTCATGGTCAAGGAACATCATCGTCAGG
AGGAGCTTCAAACATGTGAGTATTTGAATCAAAGCCTGGATATACAAATC
GTTGATTATCTCGGTTGGCAATTTTGTAGTATCGCGCAGTATTTACATTG
ACAAAGAACGCATATAATGCGTTGACAAAACGATATATTCAGATATGTTT
TTCACAAATAAGATTCATATTTTTACCTCACTTTTATCATTTTCAAGGAG
CTCTTTACCGTCAACGTCCTCATCATCCAGTAGATCTGCACCAATGGAAA
GTATTGAAGACATTCTATCAAGTAGCAAACTACTTTTCATTCTCAGAGGT
TTACCAGGCAGTGGGAAAACTACGAGAGCGATGTAAGGTTTGAACTATAT
AAGGTTTGGTACAATGGCATGCTTTTTTTAACGTGTCCATCCTCGTTACT
ACTTTCACCAAGCTAGGCAGGGTTATTCGGAAAGGTTTTTTAACTGATGT
TCACCCTGGCTTCTATGGCCAATGTTTCGTGAAATAGAGTTTTTTATATT
ATGGTTCAGTGTTTAAACTTTTTCCGTCTCAGACGAATTTCCGTCTTTGT
GAAGTAAATTTAAAGAGGGATTTCCGTTTCAAAATTCTGTATAATTCTTC
GAAATTTCAAGATTATCCTAAAACTGCTGTGTAAAATCCGTTTTCCGTCT
CATACGAAAAACCTTGGTTTGACCACTTATGGTTCTTTAAATGTCCTTTC
AATTTGCAAAATTAATTTATATTCGCTCCTTAATGCAAGGAGGTTGTCAT
TTTTCTCGTGCAGTGCGGTTTTAACCGATTCTTCTGTATTTTATTTCAGG
GAATTGACGAATGATGCAACCTTGGGTGTGATTCTGGCTACTGATGACTT
CTTTACGAAAGATGGGTATAAACATTTTTACTGAAAAATATTTGAATGCC
AAGAAATAAAATAAAAGTATACAGTCTGGATATCCAGGCTAACTCTTTCT
CTCTCTAATGCGTTCGATTGGGTTTGAATTGGACCGAAATTGTAGGACAT
TACACTTGCCAAAACACTGGCTCTAGTCCTAGTTCTTTTTCTTTTGACAA
CTGCACATAGTTTTGTATATCTTTTTGGACCTACCTAAGGTAGTCCTTTA
AATTAACCCTTGTCCGTTCGTTCGTCCGTTCGTTCGTTCGTTCGTCTGTT
GCCAGCTTTTCTCGGGATCGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTTTATCTTTTATTTAGCGTTTACACATATAACAAGAAGATGATTG
GAAAAGCACATCAGTGGAACCAAGAAAGAAGTAAGAAACAGATTTTCCAT
TTTTTATATCGTCGAAAATTGACTTCTTTACCAGAGTTTTTAACAGTTTT
CAAGTTAAAGGTTTTATTTTTACATAAGTGTTCCCGTTTCATATCAGACA
CATATTTCATATCAGGACGGTGTATGCATATTGTTATATTATGCTGATAT
AAGCAAAAAAATGTTTTTCTTTTCCTCTTTCTGGCCGATTTTGCTCCACA
TCTGTGTCAATCTAATGTGAAAAAGCTTGTGAATTAAAATTGATGAGTAA
GCAAACGATTTCACTCTTATTAAAAAGCAAAACCTTTAAGATGTTATTTC
GCCAATGAGAAAAAAAAAAGACGTGAGCATGATGCTCCAAATTATCCTAT
TGTCCTCAAACGTTGTTAATAGCAAGTTTATGTATCAGTTTTTTCTGCGA
CGGAGAAGGTTAGCTTCTGCTTTGTATAGATCCTAACTGACTGGATAACG
ACGGTAGATCAGCACTTTTACCGTCCTAGATTTTGCGGGTCAAAACTGCG
GGTTACTCCAGATCGCTTCAGTCATTCTGCCGTCCTCAAAAGTGCAAATA
CATAAACTCTCTTATGATAACGATGGTGGTATCGCAGAACTTATTAAAGG
TGGTTCTTGATTTTGATGTATTTTTTTACTTTTCTTCTCCAGCAAAATTG
AGCATGGAGGCATGCATCACACCAATTTGCATCGATAATACAAATACTCA
AAAGTTTGAAATGAAACCATACGTTTTGATGGTACGTGCTAAAGTTCAAC
AAGTTTTCGCAACAGTTTTAGGTTGATTAATGCTTTTTGAAGTATGTCTA
TGATATGAAGTTGTCAACAGGAAGCATAAAACAGGTTTTGAACGCTTCAA
ATTAGACCTAGCGAGATTCACAGATCAAGATGTATTATACTGCTGGCTAC
GTTCACTGCTTATATGTTTTCAAAAATCGAAAAAATCAATCCCTTTAAAA
TATCATCGAAAGTTTGACTTTCAGAGCAGAGTTATTTTAAAGTTATTCCC
GAAATCCAATAAAAAACATTTGCAAGAAATATTTGGTGAAACCATTTGCT
GTTAACTTGGTGACCGTTCAAGACTTTCATCTAATCATTGTATGATTTTA
ATGTTTGGTTTTCTTTTCTTTTTTTCAGGCTGACAAATACGGTTATCAAG
TGAGTATAGTTGAACCGACAACAGACTGGAAATTCACCGTTGAAACCTGT
CTACAGTAAGTGCTGGGGTCGAAATTGTATTTTTGATAATTGATGTAGGA
AATTGATTAAAAGGTTTTTTGTCTGTGAGCTTGCTCTTGTGTGGTGTGGA
GTATTTGTCCCACATAAGAAAAAGTTTCACTGAAATATTATTGAAGCTGT
TTTCATTCACTATGTTTTATTATCGATGATGTGCAGCTTGATTTGGCCCC
TTAGGGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNAGGGGGGGGGGGGTTGAGATGAAACTCTTTGGTTCGAAATGAA
GCCACCTATCTACCATGCGCGCGACTTGTATTGTTTTCACACGAACGCCA
GATTGAAAGTGAAATTCATCACCAGAGTTAAAAAATATATGCCATTTGAA
AACAAAGAAAGCACTAGATTCAATTCATCATCCTAAAAGTGGCGTAAATC
TTAAGGCTCACTTTTTTTTGAAGATTTCTCTCCAGCCTTCGGCTTTTAAA
CCCAATGGAATACACCTTGAAACTGTCTCTGTGAATTGACCTTAAACTCT
TAGTTAATTCTTTATGGTACCTCTTTACTCCTTTACAGAAAGTCTTCAAA
GAATCAAACATTGAAAGTGGATGATCTCAAGAGGATGAAGAAACGATACC
AAAGGAACGTCAAACTCGACGATATCAGAAATTGTGAGAATCCTTATCAG
AAAAAGAAAAAAAGTTCTCCGGTTTCAGAAGATTAGTCCTCGATACTTCC
CGATGCAAAACCCTTTGAGCAAAAGTTTTGAAGGCAACGTGAACAGAACG
TAATCGAGATATTGTAAGTCATATTTCGTTGTTTTTTTACACCATAATGT
TCTTATTTACGTGCAGTAGATTAATTGAATTTTACCATACTTTTTATATA
CATATTCTAATTTATTATATATGTAATGCTATATCATCAATCTTTTTTAA
AATATTATACATTTGGTATTAGTAATTTAGTATAGTCATTTTACCATTTA
ATTTTAATTCGAGTCTCTCATCAGGGAACCCTTTCTAGGAAGTTTAACAG
AAATCAAAGTTGAATTCAATTATGGTGATCGAATCTAAAAAAAAACTAAA
TCGATTAGTAATCATTACAAAGTCTTGCCTTATATGATCGATCTGTAAAA
ACAAAGACTTGTAATGACTGATCTTTAAATTTGAGAATATTATGTAGGAC
ATTTCCAGGACCAGACTCTCCATTAGAGTTAAAATCTAAAACGATAACAC
GGTCGAAATCAAGATTTTTTCTCTTCTTGTCCTGAACATGTTTTCCTGTC
CTCTTTTTGTTCTTAAGATTTTTGATGGCTAAAGGATTTCAATTTATATT
CATTATATTCATCATCTATTTACTTTTTTGTACAGTGATGTAAATAAAAC
ATTTTCGATCGTG

Coding sequence (CDS) from alignment at scaffold_20:66807..73319-

>TCONS_00051230 ID=TCONS_00051230|Name=TCONS_00051230|organism=Clytia hemisphaerica|type=CDS|length=4998bp|location=Sequence derived from alignment at scaffold_20:66807..73319- (Clytia hemisphaerica)
AAAGTCTTCAAAGAATCAAACATTGAAAGTGGATGATCTCAAGAGGATGA
AGAAACGATACCAAAGGAACGTCAAACTCGACGATATCAGAAATTGTGAG
AATCCTTATCAGAAAAAGAAAAAAAGTTCTCCGGTTTCAGAAGATTAGGC
TGACAAATACGGTTATCAAGTGAGTATAGTTGAACCGACAACAGACTGGA
AATTCACCGTTGAAACCTGTCTACACAAAATTGAGCATGGAGGCATGCAT
CACACCAATTTGCATCGATAATACAAATACTCAAAAGTTTGAAATGAAAC
CATACGTTTTGATGCGTTTACACATATAACAAGAAGATGATTGGAAAAGC
ACATCAGTGGAACCAAGAAAGAAGGAATTGACGAATGATGCAACCTTGGG
TGTGATTCTGGCTACTGATGACTTCTTTACGAAAGATGGGAGCTCTTTAC
CGTCAACGTCCTCATCATCCAGTAGATCTGCACCAATGGAAAGTATTGAA
GACATTCTATCAAGTAGCAAACTACTTTTCATTCTCAGAGGTTTACCAGG
CAGTGGGAAAACTACGAGAGCGATATGGAAACCGAAGATGCAAGCGATGA
CTTCATGGGCGGCTACTATCAACCACCACCACTATCAATGAGTATGGCAA
CTTCTAGTTATTCAAATGTTGGTCATGGTCAAGGAACATCATCGTCAGGA
GGAGCTTCAAACATAAAGTCTTCAAAGAATCAAACATTGAAAGTGGATGA
TCTCAAGAGGATGAAGAAACGATACCAAAGGAACGTCAAACTCGACGATA
TCAGAAATTGTGAGAATCCTTATCAGAAAAAGAAAAAAAGTTCTCCGGTT
TCAGAAGATTAGGCTGACAAATACGGTTATCAAGTGAGTATAGTTGAACC
GACAACAGACTGGAAATTCACCGTTGAAACCTGTCTACACAAAATTGAGC
ATGGAGGCATGCATCACACCAATTTGCATCGATAATACAAATACTCAAAA
GTTTGAAATGAAACCATACGTTTTGATGCGTTTACACATATAACAAGAAG
ATGATTGGAAAAGCACATCAGTGGAACCAAGAAAGAAGGAATTGACGAAT
GATGCAACCTTGGGTGTGATTCTGGCTACTGATGACTTCTTTACGAAAGA
TGGGAGCTCTTTACCGTCAACGTCCTCATCATCCAGTAGATCTGCACCAA
TGGAAAGTATTGAAGACATTCTATCAAGTAGCAAACTACTTTTCATTCTC
AGAGGTTTACCAGGCAGTGGGAAAACTACGAGAGCGATATGGAAACCGAA
GATGCAAGCGATGACTTCATGGGCGGCTACTATCAACCACCACCACTATC
AATGAGTATGGCAACTTCTAGTTATTCAAATGTTGGTCATGGTCAAGGAA
CATCATCGTCAGGAGGAGCTTCAAACATAAAGTCTTCAAAGAATCAAACA
TTGAAAGTGGATGATCTCAAGAGGATGAAGAAACGATACCAAAGGAACGT
CAAACTCGACGATATCAGAAATTGTGAGAATCCTTATCAGAAAAAGAAAA
AAAGTTCTCCGGTTTCAGAAGATTAGGCTGACAAATACGGTTATCAAGTG
AGTATAGTTGAACCGACAACAGACTGGAAATTCACCGTTGAAACCTGTCT
ACACAAAATTGAGCATGGAGGCATGCATCACACCAATTTGCATCGATAAT
ACAAATACTCAAAAGTTTGAAATGAAACCATACGTTTTGATGCGTTTACA
CATATAACAAGAAGATGATTGGAAAAGCACATCAGTGGAACCAAGAAAGA
AGGAATTGACGAATGATGCAACCTTGGGTGTGATTCTGGCTACTGATGAC
TTCTTTACGAAAGATGGGAGCTCTTTACCGTCAACGTCCTCATCATCCAG
TAGATCTGCACCAATGGAAAGTATTGAAGACATTCTATCAAGTAGCAAAC
TACTTTTCATTCTCAGAGGTTTACCAGGCAGTGGGAAAACTACGAGAGCG
ATATGGAAACCGAAGATGCAAGCGATGACTTCATGGGCGGCTACTATCAA
CCACCACCACTATCAATGAGTATGGCAACTTCTAGTTATTCAAATGTTGG
TCATGGTCAAGGAACATCATCGTCAGGAGGAGCTTCAAACATAAAGTCTT
CAAAGAATCAAACATTGAAAGTGGATGATCTCAAGAGGATGAAGAAACGA
TACCAAAGGAACGTCAAACTCGACGATATCAGAAATTGTGAGAATCCTTA
TCAGAAAAAGAAAAAAAGTTCTCCGGTTTCAGAAGATTAGGCTGACAAAT
ACGGTTATCAAGTGAGTATAGTTGAACCGACAACAGACTGGAAATTCACC
GTTGAAACCTGTCTACACAAAATTGAGCATGGAGGCATGCATCACACCAA
TTTGCATCGATAATACAAATACTCAAAAGTTTGAAATGAAACCATACGTT
TTGATGCGTTTACACATATAACAAGAAGATGATTGGAAAAGCACATCAGT
GGAACCAAGAAAGAAGGAATTGACGAATGATGCAACCTTGGGTGTGATTC
TGGCTACTGATGACTTCTTTACGAAAGATGGGAGCTCTTTACCGTCAACG
TCCTCATCATCCAGTAGATCTGCACCAATGGAAAGTATTGAAGACATTCT
ATCAAGTAGCAAACTACTTTTCATTCTCAGAGGTTTACCAGGCAGTGGGA
AAACTACGAGAGCGATATGGAAACCGAAGATGCAAGCGATGACTTCATGG
GCGGCTACTATCAACCACCACCACTATCAATGAGTATGGCAACTTCTAGT
TATTCAAATGTTGGTCATGGTCAAGGAACATCATCGTCAGGAGGAGCTTC
AAACATAAAGTCTTCAAAGAATCAAACATTGAAAGTGGATGATCTCAAGA
GGATGAAGAAACGATACCAAAGGAACGTCAAACTCGACGATATCAGAAAT
TGTGAGAATCCTTATCAGAAAAAGAAAAAAAGTTCTCCGGTTTCAGAAGA
TTAGGCTGACAAATACGGTTATCAAGTGAGTATAGTTGAACCGACAACAG
ACTGGAAATTCACCGTTGAAACCTGTCTACACAAAATTGAGCATGGAGGC
ATGCATCACACCAATTTGCATCGATAATACAAATACTCAAAAGTTTGAAA
TGAAACCATACGTTTTGATGCGTTTACACATATAACAAGAAGATGATTGG
AAAAGCACATCAGTGGAACCAAGAAAGAAGGAATTGACGAATGATGCAAC
CTTGGGTGTGATTCTGGCTACTGATGACTTCTTTACGAAAGATGGGAGCT
CTTTACCGTCAACGTCCTCATCATCCAGTAGATCTGCACCAATGGAAAGT
ATTGAAGACATTCTATCAAGTAGCAAACTACTTTTCATTCTCAGAGGTTT
ACCAGGCAGTGGGAAAACTACGAGAGCGATATGGAAACCGAAGATGCAAG
CGATGACTTCATGGGCGGCTACTATCAACCACCACCACTATCAATGAGTA
TGGCAACTTCTAGTTATTCAAATGTTGGTCATGGTCAAGGAACATCATCG
TCAGGAGGAGCTTCAAACATAAAGTCTTCAAAGAATCAAACATTGAAAGT
GGATGATCTCAAGAGGATGAAGAAACGATACCAAAGGAACGTCAAACTCG
ACGATATCAGAAATTGTGAGAATCCTTATCAGAAAAAGAAAAAAAGTTCT
CCGGTTTCAGAAGATTAGGCTGACAAATACGGTTATCAAGTGAGTATAGT
TGAACCGACAACAGACTGGAAATTCACCGTTGAAACCTGTCTACACAAAA
TTGAGCATGGAGGCATGCATCACACCAATTTGCATCGATAATACAAATAC
TCAAAAGTTTGAAATGAAACCATACGTTTTGATGCGTTTACACATATAAC
AAGAAGATGATTGGAAAAGCACATCAGTGGAACCAAGAAAGAAGGAATTG
ACGAATGATGCAACCTTGGGTGTGATTCTGGCTACTGATGACTTCTTTAC
GAAAGATGGGAGCTCTTTACCGTCAACGTCCTCATCATCCAGTAGATCTG
CACCAATGGAAAGTATTGAAGACATTCTATCAAGTAGCAAACTACTTTTC
ATTCTCAGAGGTTTACCAGGCAGTGGGAAAACTACGAGAGCGATATGGAA
ACCGAAGATGCAAGCGATGACTTCATGGGCGGCTACTATCAACCACCACC
ACTATCAATGAGTATGGCAACTTCTAGTTATTCAAATGTTGGTCATGGTC
AAGGAACATCATCGTCAGGAGGAGCTTCAAACATAAAGTCTTCAAAGAAT
CAAACATTGAAAGTGGATGATCTCAAGAGGATGAAGAAACGATACCAAAG
GAACGTCAAACTCGACGATATCAGAAATTGTGAGAATCCTTATCAGAAAA
AGAAAAAAAGTTCTCCGGTTTCAGAAGATTAGGCTGACAAATACGGTTAT
CAAGTGAGTATAGTTGAACCGACAACAGACTGGAAATTCACCGTTGAAAC
CTGTCTACACAAAATTGAGCATGGAGGCATGCATCACACCAATTTGCATC
GATAATACAAATACTCAAAAGTTTGAAATGAAACCATACGTTTTGATGCG
TTTACACATATAACAAGAAGATGATTGGAAAAGCACATCAGTGGAACCAA
GAAAGAAGGAATTGACGAATGATGCAACCTTGGGTGTGATTCTGGCTACT
GATGACTTCTTTACGAAAGATGGGAGCTCTTTACCGTCAACGTCCTCATC
ATCCAGTAGATCTGCACCAATGGAAAGTATTGAAGACATTCTATCAAGTA
GCAAACTACTTTTCATTCTCAGAGGTTTACCAGGCAGTGGGAAAACTACG
AGAGCGATATGGAAACCGAAGATGCAAGCGATGACTTCATGGGCGGCTAC
TATCAACCACCACCACTATCAATGAGTATGGCAACTTCTAGTTATTCAAA
TGTTGGTCATGGTCAAGGAACATCATCGTCAGGAGGAGCTTCAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032473XLOC_032473Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051230-proteinTCONS_00051230-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051230-exon-scaffold_20-1575043694:72955..73319TCONS_00051230-exon-scaffold_20-1575043694:72955..73319Clytia hemisphaericaexon
TCONS_00051230-exon-scaffold_20-1575043694:72638..72772TCONS_00051230-exon-scaffold_20-1575043694:72638..72772Clytia hemisphaericaexon
TCONS_00051230-exon-scaffold_20-1575043694:72105..72170TCONS_00051230-exon-scaffold_20-1575043694:72105..72170Clytia hemisphaericaexon
TCONS_00051230-exon-scaffold_20-1575043694:69440..69498TCONS_00051230-exon-scaffold_20-1575043694:69440..69498Clytia hemisphaericaexon
TCONS_00051230-exon-scaffold_20-1575043694:68689..68777TCONS_00051230-exon-scaffold_20-1575043694:68689..68777Clytia hemisphaericaexon
TCONS_00051230-exon-scaffold_20-1575043694:68215..68291TCONS_00051230-exon-scaffold_20-1575043694:68215..68291Clytia hemisphaericaexon
TCONS_00051230-exon-scaffold_20-1575043694:66807..67631TCONS_00051230-exon-scaffold_20-1575043694:66807..67631Clytia hemisphaericaexon
TCONS_00051230-exon-scaffold_20-1510915933:72955..73319TCONS_00051230-exon-scaffold_20-1510915933:72955..73319Clytia hemisphaericaexon
TCONS_00051230-exon-scaffold_20-1510915933:72638..72772TCONS_00051230-exon-scaffold_20-1510915933:72638..72772Clytia hemisphaericaexon
TCONS_00051230-exon-scaffold_20-1510915933:72105..72170TCONS_00051230-exon-scaffold_20-1510915933:72105..72170Clytia hemisphaericaexon
TCONS_00051230-exon-scaffold_20-1510915933:69440..69498TCONS_00051230-exon-scaffold_20-1510915933:69440..69498Clytia hemisphaericaexon
TCONS_00051230-exon-scaffold_20-1510915933:68689..68777TCONS_00051230-exon-scaffold_20-1510915933:68689..68777Clytia hemisphaericaexon
TCONS_00051230-exon-scaffold_20-1510915933:68215..68291TCONS_00051230-exon-scaffold_20-1510915933:68215..68291Clytia hemisphaericaexon
TCONS_00051230-exon-scaffold_20-1510915933:66807..67631TCONS_00051230-exon-scaffold_20-1510915933:66807..67631Clytia hemisphaericaexon
TCONS_00051230-exon-scaffold_20-1491911889:72955..73319TCONS_00051230-exon-scaffold_20-1491911889:72955..73319Clytia hemisphaericaexon
TCONS_00051230-exon-scaffold_20-1491911889:72638..72772TCONS_00051230-exon-scaffold_20-1491911889:72638..72772Clytia hemisphaericaexon
TCONS_00051230-exon-scaffold_20-1491911889:72105..72170TCONS_00051230-exon-scaffold_20-1491911889:72105..72170Clytia hemisphaericaexon
TCONS_00051230-exon-scaffold_20-1491911889:69440..69498TCONS_00051230-exon-scaffold_20-1491911889:69440..69498Clytia hemisphaericaexon
TCONS_00051230-exon-scaffold_20-1491911889:68689..68777TCONS_00051230-exon-scaffold_20-1491911889:68689..68777Clytia hemisphaericaexon
TCONS_00051230-exon-scaffold_20-1491911889:68215..68291TCONS_00051230-exon-scaffold_20-1491911889:68215..68291Clytia hemisphaericaexon
TCONS_00051230-exon-scaffold_20-1491911889:66807..67631TCONS_00051230-exon-scaffold_20-1491911889:66807..67631Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:66807..73319 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.11928	8.82737	7.08038	8.2119	26.2511	20.2872	43.8617	50.1979	38.0983	56.8764	24.9843	27.3896	36.4408	29.4672	34.0053	35.6324	24.6455	29.8396	32.1919	39.0158	21.7952	20.7268	13.9063	16.4278	31.3769	40.9779	18.6705	17.1582	9.85138	8.29763
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Blast
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BLAST of TCONS_00051230 vs. Swiss-Prot (Human)
Match: N42L1 (NEDD4-binding protein 2-like 1 OS=Homo sapiens GN=N4BP2L1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.890e-38
Identity = 66/155 (42.58%), Postives = 97/155 (62.58%), Query Frame = 1 
Query:  436 SSSKLLFILRGLPGSGKTTRAMELTNDATLGVILATDDFFTK-DGVYTYNKKMIGKAHQWNQERTKLSMEACITPICIDNTNTQKFEMKPYVLMADKYGYQVSIVEPTTDWKFTVETCLQKSSKNQTLKVDDLKRMKKRYQRNVKLDDIRNCENP 897
            S  K L++LRGLPGSGKTT A +L +D    +I +TDDFF + DG Y +N   + +AH+WNQ+R + +M   I+PI IDNTN   +EMKPY +MA +  Y+V   EP T WKF V+   +++     +  + + RMK+RY+ +V    + + E P
Sbjct:   39 SFRKHLYLLRGLPGSGKTTLARQLQHDFPRALIFSTDDFFFREDGAYEFNPDFLEEAHEWNQKRARKAMRNGISPIIIDNTNLHAWEMKPYAVMALENNYEVIFREPDTRWKFNVQELARRNI--HGVSREKIHRMKERYEHDVTFHSVLHAEKP 191
The following BLAST results are available for this feature:
BLAST of TCONS_00051230 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
N42L17.890e-3842.58NEDD4-binding protein 2-like 1 OS=Homo sapiens GN=... [more]
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