TCONS_00051229 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051229
Unique NameTCONS_00051229
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length861

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051229 ID=TCONS_00051229|Name=TCONS_00051229|organism=Clytia hemisphaerica|type=transcript|length=861bp
aaaattttgtgagaaaaatggaCCCGCCCCGCAAAGTGCAACGTATTACG
GTGGTACGTTCACGACGTCGTACAATTGTTCAAGagGAGAAAACCTACCA
CAGTCTCATCGAGATGGCTGGAGATTCATTGGACATTCTACCACCATCTA
AACCACCGGAACCGGTCATCCAACAACCCAACATTCACCTTACTGGTCAT
CTAGAGACTGACGGTGCACGTCCCATTAATAAAGCACCTTCTAATCTTTT
CGAACAACTATCTGGTCCTGCACCACCGACCAGTTCCCAAAACCTCTTTC
AGTCACCGAGTTTCCCAGACACCAGTAATCCGTTCCGATCATCTCCAGCT
GCCACCGGATCACTTTTCAATAACCCGATTCCAACACTTAACCAAGTGCA
ATATCCAATCGGAAACCCTATTCCGACACTTCCACAGACCAGAAATCAAA
TACCTACCCTACCTTTCGGAGGTGGGAGCCCGCAACAGCCTAGGATTAGT
ACCTCTCCCTACTCAACACCACCCGGCCTGTTTCCCAATCCACGAGCACT
CCTTCCTACACCACCACCATCTACTAGCGATCCAATTATGATGATTTCAC
CATCATGTCAACCTTTTCAACTCATTAGCCATCCAGCAAACGAAACGATG
AAACCAACTCCTGCTAATCGACCAGTACCTGCACCAAGGAAGAACATCCC
TCAAAGCAAGACAGCAAAGTATCACGAGGTTGGTACTCTATGGTTGGTTT
TAATGAGAGGATTACCCGGTTCTGGTAAATCACATCGATCAAGGGAGATA
GCTGGAGGACGTGGTGTAGTTTTATCTACGGATGACTACTTCATGAATAA
TGGGAGGTAAA
Run BLAST on NCBI

transcript from alignment at scaffold_20:63880..66400-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051229 ID=TCONS_00051229|Name=TCONS_00051229|organism=Clytia hemisphaerica|type=transcript|length=2521bp|location=Sequence derived from alignment at scaffold_20:63880..66400- (Clytia hemisphaerica)
AAAATTTTGTGAGAAAAATGGACCCGCCCCGCAAAGTGCAACGTATTACG
GTGGTACGTTCACGACGTCGTACAATTGTTCAAGGTTTGTTATATTCTCT
CTATATTCTTTTTTCCAGGAAAATGAAACTAAGACAAAAAAAATAAATAG
CTACAAAAAACGTTTGAAAAAAAATAAAACGGGGAAGAAAAATAGCAATG
GATAGTGACAGTATCAAGAAGAAAAATGAACTTAAAAAGAAGTATTATGA
ATTATTTCATGGGAAAGTTGATAAGGAGATAATTGATGTTGTACTTGCAA
CCTGTGAATATAATGGTAAGCGAAGGTTAAAGGAACCTTGGTTACATTAT
ACCTGAATCTAGTTGATTATACGTATTGCTAGACCTACTATTTTTATAGT
GTTACTGGATTTCATTTCTCTCCCGAAACGAGTTCACCGCTAGCTTTGTA
TGTTTTAATGTTCGTTTGAGCTATCAATAAGTTTGAAACTCTCGAATAGC
ACAAAATATTGAAGACAAGCAAAAACGATCTTTTTCTTCCTGTTCTTGAA
ATTTCTACTCTAAGTAGATTACATCTAATCAGCCCTCTGTTTATTTTTTT
TAGAGGAGAAAACCTACCACAGTCTCATCGAGATGGCTGGAGATTCATTG
GACATTCTACCACCATCTAAACCACCGGAACCGGTCATCCAACAACCCAA
CATTCACCTTACTGGTCATCTAGAGACTGACGGTGCACGTCCCATTAATA
AAGCACCTTCTAATCTTTTCGAACAACTATCTGGTCCTGCACCACCGACC
AGTTCCCAAAACCTCTTTCAGTCACCGAGTTTCCCAGACACCAGTAATCC
GTTCCGATCATCTCCAGCTGCCACCGGATCACTTTTCAATAACCCGATTC
CAACACTTAACCAAGTGCAATATCCAATCGGAAACCCTATTCCGACACTT
CCACAGACCAGAAATCAAATACCTACCCTACCTTTCGGAGGTGGGAGCCC
GCAACAGCCTAGGATTAGTACCTCTCCCTACTCAACACCACCCGGCCTGT
TTCCCAATCCACGAGCACTCCTTCCTACACCACCACCATCTACTAGCGAT
CCAATTATGATGATTTCACCATCATGTCAACCTTTTCAACTCATTAGCCA
TCCAGCAAACGAAACGATGAAACCAACTCCTGCTAATCGACCAGTACCTG
CACCAAGGAAGAACATCCCTCAAAGTAAGACGAGATATTCTCAGTATCAA
CCCATTGTGTTGTTTTTGTGCTCCCAGATTTGGTTATACAAACTGCAGTT
GATGGACAGTGTTTATGTTTTAATACATGATCCAAATTCTTTTTAATTGA
TCCAGCTTTGACCTCTTCCCATATTTTGGAGTTGTTCGAAGATTTTTTGA
GCACTAGCTTAGGTGATATTTTCTTTATTAATACCTTCTCTAGAGTAAAA
ATCCGGTAAGGTTTATCAGCTTAATTCGTTGAGTACCACCGGTATCGTAT
GAGTACGCTCGATTTTTTTCGGTCCTGTACCGGTAGGTCTATACCTCGCG
CGACCCATGTCATGTTTTTTACCCCGTCCGAATAAGAAAGTCGAGACGAG
ATTTACATTTTTATTAGTTTCGCGCATCTGAAATCAAAACATCATTTGAA
AATTCCACGTGGTACTAGGGATCCAACCCTTAAGATCTGCGGCATCTTTC
GTGGGGTCGCGATTTAGGCCTGGCAAAAGTTTTTTATGGCAAAAAAACGG
ACGCTGTAGGCAAGACACCTAACCCCCTAAAATGAGTAAAACATTGACGA
TGATAGGTAAATATATGATATGTTAAATCCAGAATTCCTTTTCACGTATT
TTTAACCCCGTCCGAATAAGAAACTAAGTCGTGATTGACATTGTTTATAG
TTTGGGTGTTTATAGTTAGGTCAGTGGCTATACCCAGAATTCCTTTTCAC
CTTTTCCAGGCAAGACAGCAAAGTATCACGAGGTTGGTACTCTATGGTTG
GTTTTAATGAGAGGATTACCCGGTTCTGGTAAATCACATCGATCAAGGTT
TGTTGACTATTTCTAAGTTATTTTGTGTTCAGTTGAGATTATCCTGGTAC
AGCTTACTGATTGAGACCTATATTTTTAGAACGAGATACCTTATCGGGGA
AAGAAATGTCGGGGGAAAGTGACAAAAATTTTAAGGAGGTGACGAAATTA
AAACCCTCGTACTCTACCGTGCCGAATTAATGCCCCCCCCCAGTTATTTA
ATTTTAGAAAAATGTTCGGGGTCCCCCCCCCCCATTGATTTTTGAGAGCA
AGAAGACTGGCAGTGTCCGGTGAAATAGTCCACGTACTTGTCTAAGAATT
TCCTTCTATTCTGCTCGATCGACTCTAAACTATTTAATCCCCAAAGTAGC
CCTTAGCCCTTAGCCCTTAGCAACTACAGACATGTATTATTTTCTGTTTT
TAGGGAGATAGCTGGAGGACGTGGTGTAGTTTTATCTACGGATGACTACT
TCATGAATAATGGGAGGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032472XLOC_032472Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051229-exon-scaffold_20-1575043694:66317..66400TCONS_00051229-exon-scaffold_20-1575043694:66317..66400Clytia hemisphaericaexon
TCONS_00051229-exon-scaffold_20-1575043694:65177..65797TCONS_00051229-exon-scaffold_20-1575043694:65177..65797Clytia hemisphaericaexon
TCONS_00051229-exon-scaffold_20-1575043694:64354..64441TCONS_00051229-exon-scaffold_20-1575043694:64354..64441Clytia hemisphaericaexon
TCONS_00051229-exon-scaffold_20-1575043694:63880..63947TCONS_00051229-exon-scaffold_20-1575043694:63880..63947Clytia hemisphaericaexon
TCONS_00051229-exon-scaffold_20-1510915933:66317..66400TCONS_00051229-exon-scaffold_20-1510915933:66317..66400Clytia hemisphaericaexon
TCONS_00051229-exon-scaffold_20-1510915933:65177..65797TCONS_00051229-exon-scaffold_20-1510915933:65177..65797Clytia hemisphaericaexon
TCONS_00051229-exon-scaffold_20-1510915933:64354..64441TCONS_00051229-exon-scaffold_20-1510915933:64354..64441Clytia hemisphaericaexon
TCONS_00051229-exon-scaffold_20-1510915933:63880..63947TCONS_00051229-exon-scaffold_20-1510915933:63880..63947Clytia hemisphaericaexon
TCONS_00051229-exon-scaffold_20-1491911889:66317..66400TCONS_00051229-exon-scaffold_20-1491911889:66317..66400Clytia hemisphaericaexon
TCONS_00051229-exon-scaffold_20-1491911889:65177..65797TCONS_00051229-exon-scaffold_20-1491911889:65177..65797Clytia hemisphaericaexon
TCONS_00051229-exon-scaffold_20-1491911889:64354..64441TCONS_00051229-exon-scaffold_20-1491911889:64354..64441Clytia hemisphaericaexon
TCONS_00051229-exon-scaffold_20-1491911889:63880..63947TCONS_00051229-exon-scaffold_20-1491911889:63880..63947Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:63880..66400 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	2.0188	1.87163	0.00345252	1.92161	3.61792	0	0.000157723	0	1.03843	0.72824	1.80534	2.15615	0	1.20402	3.50507	0	2.45639	0	0.00214952	1.28298e-07	0	0	1.70648	0	0.0581235
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051229 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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