TCONS_00051220 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051220
Unique NameTCONS_00051220
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1849

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051220 ID=TCONS_00051220|Name=TCONS_00051220|organism=Clytia hemisphaerica|type=transcript|length=1849bp
GAAACCGAATATTTTAAACGGGAAACGATCGGATTAATTCCgattatcaa
taaattttcactttcgttttcaaaatatacaaaaaatgcatttttctgCA
ATCTAATCTACACAACACTGGACAACATCAACTGATCACTGCAGACAACA
AGCAAGATTTTGAGGACAAGGAAGTGTAGAAAAAGGAGAGGTTAATCTAT
CTTTGCTGTATCTCAAAAACCAAAAGagTGCAAATGGAGGTTCGATTCAC
TTCAAACAATTCAATTGATTCAATTGGGATGGCTAATGATGACGAAATTC
TAATCCAATCATCAAAAGAGTTCACAGTGCACATTTACAAATACAGATGG
TTTATATTGGTACTTTATAGTTTAACAGCTTTTTCAAACACTCTGGTTTG
GTTAAGTTTATTTACTGTCACTGATGCAACTTCAATTTTCTATGGTGTAA
AAGAAGAATATTTGATTTGGTCTTCGGCTTCATCAACTGTCATTCAGTGT
TTTATTgctattccattttcatttctACCATCTCGACTTGGATTGAGAAC
CTCGATGATCATAGCAGCTGCTTTAAATTCTGTTGGTGCTTGTATCATGA
TTGCTGGTGCCCATCGTGGAGGCTTTGCATATTTTATTGCAGGACAAGCA
ATTGTGGCTATTGCAGCCAGTATTTTACCGCAACTTGCTCCAGAAGTATC
AGCTGTTTGGTTTGGTAAAAACGAACAAGCCATCAGTACTGGAATAGGAG
TCACAGTTGGTAATGCAGGTGCTGCATTTGGATTTCTTCAACCAgcttta
tttttaaaagatgTTGACCCTCGAACGGATATTGATAAACTGAGCATGAA
AATTAAACAACTGATTTACGTACAAGCTGGATTATGTGTTATTTTGACTg
tcattgttttcattttctttaaacaACGCCCTGCAAAACCTCCATCCGTT
TCACAAGCTGTACGTCCAGGCCCTGGATCCCttaatttccaagaattttc
acgTTGTTGTAAAGAAGTGTTATCAAACTGTCAATTTCATATCATTGGTA
ACACTTTTGCTTTGATGAATATGGTCACTTTTGTAGTACCCGTTGTTTTA
AACCAGATTATGGGGTGGAAATTTCCAGGTAAGGATGCAATGTTTGGTTG
GATGGGGTTTGCTGGTATAGTTTCTGGAATTCTTGGAAGTGTTGTGTTTA
GTTTAATATTGGACAAAACAAAAGCCTTCAAAGCGATGAATGTTGTCATT
GCTTTTATTTCTGTCATCATGTGGGTGGCTTTTGTAGATCTGTTGAAACG
CGTTGCAAACCTTGCAGTTTCGATGATCGTTTTTATTGTAGCTTTACTTC
TATTTATTCCTATGAGTCCTATATTGGTTGATACCATGGCTGAAATTACG
TATCCTTTACCTGAGAGTATCCCATTTGCTGTTGCAATCACTGGAGCTAG
ACTTTACAGTATACCGATAACATTTTTAGCTGGATACTTGGTTGACCAGA
AGAAATATTATGGTGTTGCGCACATGTTTACTGGAGTGTTGGCTTTTTGT
TTACTTCTAGTGATTGTAATGAGAGTGGATCGTAAAAGGACTTTAGCAGG
ACTTGAAAGTAATACAGTTGTTGATGATGAGTTGATGGTTGGTGGGCCGA
TCATCATTGGCGACCACGATGAAGAGGATGACGAATAAGACAAACGTACA
AACCACGATCTTTGGTGAAAGTCTCTGTTTGCGAAACGTCTAACTTAATG
ATATTAAACATTATTGCGCATTTTTTTACGACCAAGGATTTTTTCTAATG
AAATGCTCGTCTTTGATATTTGGATTTACATTGATAATTCTGAGTTATA
Run BLAST on NCBI

protein sequence of TCONS_00051220-protein

>TCONS_00051220-protein ID=TCONS_00051220-protein|Name=TCONS_00051220-protein|organism=Clytia hemisphaerica|type=polypeptide|length=484bp
MEVRFTSNNSIDSIGMANDDEILIQSSKEFTVHIYKYRWFILVLYSLTAF
SNTLVWLSLFTVTDATSIFYGVKEEYLIWSSASSTVIQCFIAIPFSFLPS
RLGLRTSMIIAAALNSVGACIMIAGAHRGGFAYFIAGQAIVAIAASILPQ
LAPEVSAVWFGKNEQAISTGIGVTVGNAGAAFGFLQPALFLKDVDPRTDI
DKLSMKIKQLIYVQAGLCVILTVIVFIFFKQRPAKPPSVSQAVRPGPGSL
NFQEFSRCCKEVLSNCQFHIIGNTFALMNMVTFVVPVVLNQIMGWKFPGK
DAMFGWMGFAGIVSGILGSVVFSLILDKTKAFKAMNVVIAFISVIMWVAF
VDLLKRVANLAVSMIVFIVALLLFIPMSPILVDTMAEITYPLPESIPFAV
AITGARLYSIPITFLAGYLVDQKKYYGVAHMFTGVLAFCLLLVIVMRVDR
KRTLAGLESNTVVDDELMVGGPIIIGDHDEEDDE
Run BLAST on NCBI

transcript from alignment at scaffold_20:219411..226245+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051220 ID=TCONS_00051220|Name=TCONS_00051220|organism=Clytia hemisphaerica|type=transcript|length=6835bp|location=Sequence derived from alignment at scaffold_20:219411..226245+ (Clytia hemisphaerica)
GAAACCGAATATTTTAAACGGGAAACGATCGGATTAATTCCgattatcaa taaattttcactttcgttttcaaaatatacaaaaaatgcatttttctgCA ATCTAATCTACACAACACTGGACAACATCAACTGATCACTGCAGACAACA AGCAAGATTTTGAGGACAAGGAAGTGTAGAAAAAGGAGAGGTTAATCTAT CTTTGCTGTATCTCAAAAACCAAAAGGTAGCTATGGGATTTTATGTATTC TTTTCTCATTATAAACAGAACAACAacaggaaggaaaaaaaaagattcca cGTCCTGGACTAAGAAAGATTCCATGTGATTCCACTGACTTTACTAGAAT GTTTCCCCTGTCTNCTTTTCCAAAATAGTGCCAAAACTATTAGCTTATat aagctaaaattttgcacaaaactGTATGAATGGTTTACAATTAGTGTCCA GATAACAAATTTTGCTTATTCGGTCCCGNCTCATTATAAACAGAACAACA acaggaaggaaaaaaaaagattccacGTCCTGGACTAAGAAAGATTCCAT GTGATTCCACTGACTTTACTAGAATGTTTCCCCTGTCTTTTGAGAGAGGA CAGAGAGCCAGCTAAAAGATGAATAACTtactaccgtgagattgggtaac ttgcatcagttgggccattccagtttttattcgttaccccccaatggacg acatggaatttccgtagcaaattgctttcaagaaagtctgGAATTTCCGN GTCCTAAATATGGACCATTTAACCTATATCTGACTCTAAAACAGCTACAG CTGGTACTATTATACCCCAAATCATGATAAAAACATGAGGGATAAGTCAA AACGAGCCATTAAATGGACAAAATGTTGTCTTGTAGTTGCGGTGAAAATA GATAGACTATGGAGCTTTTAGATATCATTTGCAGGACAATTTTTTGTCTA ACTTATGGACCCTTTTACATTCAAACTAATTTAGTATTTCTTAGtttata ttcttacagtataaaTTAGGAGAGTTGTTCCACTCTTTTTTATTATAGCT CTACCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNagacctggctggtcattaaaatacaa ctacgcagctcctctcgcagctctagtctaccatttttgttttgacttaa ctttgtattttaatgaccagctaggtctttcgtttgagggctatgcatgt tccagtatggattccacaaaatctcgcgccgaagatattttCGGTACAGC AAGCCNTTATGTTTAACCATAGTGTTTTTGTGTTAAAGATCACTTGATAG TTTCAGTTTTGACCACTTTCATAATTTAGATACTAAAACTAATGTAAAAT TAAGGACAAGTTTATTGTCCTATTTTGGGACCCAAATNtttgtaccaaca ttcaatttttcaataagggtgcaagatgggaaaagaggcgcatgcgccaa catgattaataaattgacgcgagcgtaagcaaatttagccaaatgaaagc taaaaatcgattgattatggagtcattcgcgccgagctggaattattact ttacgccaaatgaaaatcaaacaatctttgtaagtacccttacgccaatg cgccaaaaacgttttagttgtacgccgaagatcttcggcgttagttacac gaaatccatactggacactgtcatttaaatggtacaaaaaatagctgttt tttCACCATCTTTACACCCCTGActagttttgaaaattaaagacTCGTAA ATGTCTACTAGGCCCTACACTGATACCTGTGGTTAAGTTAAAACGTTCGT TTTTNATGGCCCTTTTTAGGACAATCTTTTTGTCTGGACaacaaattagc catatttgggccATTTAACCCCCTGGAGTGATTTTAACCATCTTTTATCC TTTCTAATGTTAATATAGAGGTTTTCTGAgattttctctaatttttgatg taatttgggcaagttattacaaaaaccttattttaagccatttttggcAT GGTGCATGATTTGTACCATTTAAATGACAGTGTCCTACTggtgcatgtta gcctccactgatgcaagttacccaatctcacggtactacAGTATAAATTT TGTTACTCCAAGCCTGCTCCAAGCTGCTGCCGGCCATACATACAAGCTgc cagttacatcaaaatgccaaaaacattccagttaggaacatttgacCTGA ACATACTCCAAAcattaagagccagtttttctaagagcggggcaggtcca atagtttgaaacttagattttttttcatctttggaTATGTTTTATTAAGt ataatgggctattccattttaaaccatacaggggtatttattgacaaact tttccaggggggactgagccttgattttccaaggggcttttggtcatttt cagattttccaagggggttattaaaggtttccagggggttctctcCTCCT AAACTAGCATCAATAGTCACTTTCCAGGccctttttctcaaaatttcact ttccaggggtgttgactcctaatttccaggggatagtttgttatccaaaa tttccaagggggttagtgaaaaaagttcgtcaatacccctgtacaatttt tttttggaatcataGCCCAATGAATTGTTAGTTTGCTGTcgcccgaccct agattttgaaggtgggtcggtcggtcggaaatttattttatgttgacgat ttatgaaattttcgaaCATGGAAGGGTtaaaacagtttgtttacatttag gtaatagTCTGGCAGCAATAAAAGTTgaccttgaaaaaaattctgcgtaa actttcttggtatcattggaaGCGGAATTTTAGCATAGTTAGCAAGTTTT AACATACTCAGAGCTTCACGTTGAGGCCCTCAGAGCCTCACGTTGAGGCC CTTGGggaaaaaaattggtgaaataaaACACTAAGGACCCATTTTCGATA TAAAATGCCTTGAAAAGTGCTATCCTTGCAATGGTAGGTGCCTTTTAAAA CACTCAatgtatacccctgtctcaaaatttgGGGGTGGGGGGATTTCCCA ACAAAGATTTCTGGAGAACACAAGCAATTAAACAGTGTCATCCATgacag tgtagctctaaagctctaaaacagcatctaataacatgaaaaccagaata tgattcNNtaacaaaatttataacggcactgtcatcattgacaataaaac aaacaatattctgtcaagagccttgtaaacattccaacaacttccatcga aatgatctatcacagctcagtctaccattttagcgcggtTCGAGGATTGA ACCGAGAACTCGCAGAGCGCCAgagctcccgcgcggcgcgcaccgcgcag ggatgaaaaacttcaatctgtcaatcattttctcaagcgaagagtacgcg aagcggttctagctttacgatagtgccgcggatcatcaatggatagtatt caattatcattatgcctttattttcattactagaactttagcaaaaaaaa ggaaaaatagaaaagttgtattttttactgctctattcacatactgaatt tgaaacatcttctatgtggcgtttttttgcaaacttcaaaaaactgattt ttgtcctgcctttgcgggattttggcccaagtgcttgagtgcagcatagg gtacaaagtccaaatatgcgtttcccgtaatttttgtatgaagagtgaGG TCTACACTGCATGATATGAAATGGGTCAAGTGCAAGGCGAAAGCCCTTGG GCGAAAGCACATGGGGATAGcgctgactttcaaagactgtaccaacggta ccaagaaagtttacgcggAATTTTTTTCTACGTTCACCCCTGTTTTGTTG TATTTCGGCCAGACTAtaattttgaatggaaaacAGAAGAGCGCTATCAG GGAATTCAcaattcttatgcttgagacagacaagatacgagttttgattt gattgttttaagtttttgaagaaaaaaaatttcttctttaaaatggcaat aaaattttttgggtcggcaggttttaaggtagggtcggtcgggtgacggc aaaccaacaattttttcagTCCAGCCTGAATCATAATACACTTAATACAT TAgtatattttcatgaatttaaaCAATAAGGATAGGTAATCAAACAAAAT TATCATTTAAATTATTGTAGTCAGGCCACTttttactttaattggattaa atttcgcgaaaaaaattttctgtattTAATATTGTgaataagcctgaaaa tgtaTTGAAATTTTAATGGGACAATTAAGAGGAGCTTCTTAAAACAATAc atcataaaaaaatttgacattgcCAGGATGAAGAGTGTAATGTTTTCCCA ATCCACGAGCAAATTAGATCTTTCATTTTGTTCTCAGATTATGTAATCCT TGTTTAAAACCAGACAAgataccagggtagtaaaaaaACTGATaatccag ggggggggtcagtactaaaatgtaagacatacatgagtactaaaagtatt ttcgctaatttttgacatacccccacctatttttcgaaaatgttatttta gtacacatgtactaaaattattttgagcaatctaacatagataccaccca ttttttgcccttttacggctttaaatttaccaaacctagtcgaattttgt gcatcaatctgcaaatgatataattttattactaaactgtgctgaacata aaaatatttttaaaaaatatttaaaaaattggaaaaattctgaaagataa ttctgaagattttttcgaaaattcctgaaaaaaaataatcaaattttgtc caaaattgttaaaaaaaatgctccattttggctgattttagaacaaaata ctaagatttttcaaaaatttctttaagggaccaccctttttggtatttaa GTCATTTATNTTCAGGGTGTGTTCCAGACCAGGTTTTCAGaggcaaaaat caaaaaattgtggCCTGAACTTGGCCTGAACATTCTGACAGAAAGAATGG TTTGCTATTTGGGCCAGCCGAAAAAGTTTGGGGCATGTTCAGGCCATACC GTTGATCGTGAATGAGGCTGACTGTTTTTACTAAAACGAGCCATAAAATG CTggtaaagtttaaaaaaacgtAATAAATTTTCGATATAgattctatttt ttatattttcagagTGCAAATGGAGGTTCGATTCACTTCAAACAATTCAA TTGATTCAATTGGGATGGCTAATGATGACGAAATTCTAATCCAATCATCA AAAGAGTTCACAGTGCACATTTACAAATACAGATGGTTTATATTGGTACT TTATAGTTTAACAGCTTTTTCAAACACTCTGGTTTGGTTAAGTTTATTTA CTGTCACTGATGCAACTTCAATTTTCTATGGTGTAAAAGAAGAATATTTG ATTTGGTCTTCGGCTTCATCAACTGTCATTCAGTGTTTTATTgctattcc attttcatttctACCATCTCGACTTGGATTGAGAACCTCGATGATCATAG CAGCTGCTTTAAATTCTGTTGGTGCTTGTATCATGATTGCTGGTGCCCAT CGTGGAGGCTTTGCATATTTTATTGCAGGACAAGCAATTGTGGCTATTGC AGCCAGTATTTTACCGCAACTTGCTCCAGAAGTATCAGCTGTTTGGTTTG GTAAAAACGAACAAGCCATCAGTACTGGAATAGGAGTCACAGTTGGTAAT GCAGGTGCTGCATTTGGATTTCTTCAACCAgctttatttttaaaagatgT TGACCCTCGAACGGATATTGATAAACTGAGCATGAAAATTAAACAACTGA TTTACGTACAAGCTGGATTATGTGTTATTTTGACTgtcattgttttcatt ttctttaaacaACGCCCTGCAAAACCTCCATCCGTTTCACAAGCTGTACG TCCAGGCCCTGGATCCCttaatttccaagaattttcacgTTGTTGTAAAG AAGTGTTATCAAACTGTCAATTTCATATCATTGGTAACACTTTTGCTTTG ATGAATATGGTCACTTTTGTAGTACCCGTTGTTTTAAACCAGATTATGGG GTGGAAATTTCCAGGTAAGGATGCAATGTTTGGTTGGATGGGGTTTGCTG GTATAGTTTCTGGAATTCTTGGAAGTGTTGTGTTTAGTTTAATATTGGAC AAAACAAAAGCCTTCAAAGCGATGAATGTTGTCATTGCTTTTATTTCTGT CATCATGTGGGTGGCTTTTGTAGATCTGTTGAAACGCGTTGCAAACCTTG CAGTTTCGATGATCGTTTTTATTGTAGCTTTACTTCTATTTATTCCTATG AGTCCTATATTGGTTGATACCATGGCTGAAATTACGTATCCTTTACCTGA GAGTATCCCATTTGCTGTTGCAATCACTGGAGCTAGACTTTACAGTATAC CGATAACATTTTTAGCTGGATACTTGGTTGACCAGAAGAAATATTATGGT GTTGCGCACATGTTTACTGGAGTGTTGGCTTTTTGTTTACTTCTAGTGAT TGTAATGAGAGTGGATCGTAAAAGGACTTTAGCAGGACTTGAAAGTAATA CAGTTGTTGATGATGAGTTGATGGTTGGTGGGCCGATCATCATTGGCGAC CACGATGAAGAGGATGACGAATAAGACAAACGTACAAACCACGATCTTTG GTGAAAGTCTCTGTTTGCGAAACGTCTAACTTAATGATATTAAACATTAT TGCGCATTTTTTTACGACCAAGGATTTTTTCTAATGAAATGCTCGTCTTT GATATTTGGATTTACATTGATAATTCTGAGTTATA

Coding sequence (CDS) from alignment at scaffold_20:219411..226245+

>TCONS_00051220 ID=TCONS_00051220|Name=TCONS_00051220|organism=Clytia hemisphaerica|type=CDS|length=1455bp|location=Sequence derived from alignment at scaffold_20:219411..226245+ (Clytia hemisphaerica)
ATGGAGGTTCGATTCACTTCAAACAATTCAATTGATTCAATTGGGATGGC
TAATGATGACGAAATTCTAATCCAATCATCAAAAGAGTTCACAGTGCACA
TTTACAAATACAGATGGTTTATATTGGTACTTTATAGTTTAACAGCTTTT
TCAAACACTCTGGTTTGGTTAAGTTTATTTACTGTCACTGATGCAACTTC
AATTTTCTATGGTGTAAAAGAAGAATATTTGATTTGGTCTTCGGCTTCAT
CAACTGTCATTCAGTGTTTTATTgctattccattttcatttctACCATCT
CGACTTGGATTGAGAACCTCGATGATCATAGCAGCTGCTTTAAATTCTGT
TGGTGCTTGTATCATGATTGCTGGTGCCCATCGTGGAGGCTTTGCATATT
TTATTGCAGGACAAGCAATTGTGGCTATTGCAGCCAGTATTTTACCGCAA
CTTGCTCCAGAAGTATCAGCTGTTTGGTTTGGTAAAAACGAACAAGCCAT
CAGTACTGGAATAGGAGTCACAGTTGGTAATGCAGGTGCTGCATTTGGAT
TTCTTCAACCAgctttatttttaaaagatgTTGACCCTCGAACGGATATT
GATAAACTGAGCATGAAAATTAAACAACTGATTTACGTACAAGCTGGATT
ATGTGTTATTTTGACTgtcattgttttcattttctttaaacaACGCCCTG
CAAAACCTCCATCCGTTTCACAAGCTGTACGTCCAGGCCCTGGATCCCtt
aatttccaagaattttcacgTTGTTGTAAAGAAGTGTTATCAAACTGTCA
ATTTCATATCATTGGTAACACTTTTGCTTTGATGAATATGGTCACTTTTG
TAGTACCCGTTGTTTTAAACCAGATTATGGGGTGGAAATTTCCAGGTAAG
GATGCAATGTTTGGTTGGATGGGGTTTGCTGGTATAGTTTCTGGAATTCT
TGGAAGTGTTGTGTTTAGTTTAATATTGGACAAAACAAAAGCCTTCAAAG
CGATGAATGTTGTCATTGCTTTTATTTCTGTCATCATGTGGGTGGCTTTT
GTAGATCTGTTGAAACGCGTTGCAAACCTTGCAGTTTCGATGATCGTTTT
TATTGTAGCTTTACTTCTATTTATTCCTATGAGTCCTATATTGGTTGATA
CCATGGCTGAAATTACGTATCCTTTACCTGAGAGTATCCCATTTGCTGTT
GCAATCACTGGAGCTAGACTTTACAGTATACCGATAACATTTTTAGCTGG
ATACTTGGTTGACCAGAAGAAATATTATGGTGTTGCGCACATGTTTACTG
GAGTGTTGGCTTTTTGTTTACTTCTAGTGATTGTAATGAGAGTGGATCGT
AAAAGGACTTTAGCAGGACTTGAAAGTAATACAGTTGTTGATGATGAGTT
GATGGTTGGTGGGCCGATCATCATTGGCGACCACGATGAAGAGGATGACG
AATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032468XLOC_032468Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051220-proteinTCONS_00051220-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051220-exon-scaffold_20-1491911889:219411..219636TCONS_00051220-exon-scaffold_20-1491911889:219411..219636Clytia hemisphaericaexon
TCONS_00051220-exon-scaffold_20-1510915933:219411..219636TCONS_00051220-exon-scaffold_20-1510915933:219411..219636Clytia hemisphaericaexon
TCONS_00051220-exon-scaffold_20-1575043694:219411..219636TCONS_00051220-exon-scaffold_20-1575043694:219411..219636Clytia hemisphaericaexon
TCONS_00051220-exon-scaffold_20-1491911889:224623..226245TCONS_00051220-exon-scaffold_20-1491911889:224623..226245Clytia hemisphaericaexon
TCONS_00051220-exon-scaffold_20-1510915933:224623..226245TCONS_00051220-exon-scaffold_20-1510915933:224623..226245Clytia hemisphaericaexon
TCONS_00051220-exon-scaffold_20-1575043694:224623..226245TCONS_00051220-exon-scaffold_20-1575043694:224623..226245Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:219411..226245 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.2923 11.286 4.3109 3.64242 6.73896 5.32522 5.61809 6.32713 7.32827 7.40631 8.438 6.48329 6.35918 6.00641 6.53498 7.97535 6.04115 4.72721 5.08214 5.70311 4.18316 3.48908 9.72305 10.4407 5.08653 6.13572 3.23325 2.12102 8.49978 9.19812
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
BLAST of TCONS_00051220 vs. Swiss-Prot (Human)
Match: FLVC2 (Feline leukemia virus subgroup C receptor-related protein 2 OS=Homo sapiens GN=FLVCR2 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 7.759e-41
Identity = 109/440 (24.77%), Postives = 215/440 (48.86%), Query Frame = 3
Query:  327 VHIYKYRWFILVLYSLTAFSNTLVWLSLFTVTDATSIFYGVKEEYLIWSSASSTVIQCFIAIPFSFLPSRLGLRTSMIIAAALNSVGACIMIAGAHRGGFAYFIAGQAIVAIAASILPQLAPEVSAVWFGKNEQAISTGIGVTVGNAGAAFGFLQPALFLKDVDPRTDIDKLSMKIKQLIYVQAGLCVILTVIVFIFFKQRPAKPPSVSQAVR---PGPGSLNFQEFSRCCKEVLSNCQFHIIGNTFALMNMVTFVVPVVLNQIMGWKFPGKDAMFGWMGFAGIVSGILGSVVFSLILDKTKAFKAMNVVIAFISVIMWVAFVDLLKRVANLAVSMIVFIVALLLFIPMS---PILVDTMAEITYPLPESIPFAVAITGARLYSIPITFLAGYLVDQKKYYGVAHMFTGVLAFCLLLVI------VMRVDRKRTLAGLES 1610
            + + + RW +++++S  +  N+  W+   ++ +    FYGV    + W S    +    + +P ++L  + GLRT  +  +ALN +GA + +       F   + GQ I ++A   +  +   +++VWFG NE + +  + V     G A GFL P + + +++ R   D+L+  I  + Y+  G+  +L ++V I FK++P  PPS +Q++      P +      +R  K    N  F ++  T+ L     + +  +LN+++ W +PG++   G +G   +++G+LG+V+  + LD++K +K   +V+  ++++  V +   L    NL    +VFI A  +   M+   P+  +   E+TYP  E I   +    A+++ I  T   G ++D    YG      G +  C+ L +       ++ D +R  A  E+
Sbjct:   78 IKVSRRRWAVVLVFSCYSMCNSFQWIQYGSINNIFMHFYGVSAFAIDWLSMCYMLTYIPLLLPVAWLLEKFGLRTIALTGSALNCLGAWVKLGSLKPHLFPVTVVGQLICSVAQVFILGMPSRIASVWFGANEVSTACSVAVFGNQLGIAIGFLVPPVLVPNIEDR---DELAYHISIMFYIIGGVATLLLILVIIVFKEKPKYPPSRAQSLSYALTSPDASYLGSIARLFK----NLNFVLLVITYGLNAGAFYALSTLLNRMVIWHYPGEEVNAGRIGLTIVIAGMLGAVISGIWLDRSKTYKETTLVVYIMTLVGMVVYTFTL----NLGHLWVVFITAGTMGFFMTGYLPLGFEFAVELTYPESEGISSGLLNISAQVFGIIFTISQGQIIDN---YGTK---PGNIFLCVFLTLGAALTAFIKADLRRQKANKET 500          
The following BLAST results are available for this feature:
BLAST of TCONS_00051220 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FLVC27.759e-4124.77Feline leukemia virus subgroup C receptor-related ... [more]
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