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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051199 ID=TCONS_00051199|Name=TCONS_00051199|organism=Clytia hemisphaerica|type=transcript|length=988bp
cgaaaaattgcatttcgcgggttttaattttcgcggttttttccattctg
gaattttcgcgggttttaattttcgcggttttgcccttttatggacaaat
ttctttcattttcctagggatttttcaaatttttcgataaaatcggaaaa
aattgtatttcgcgggaattaattttcgcggttttcaactctcaaatttt
ttcgcgggatcaaattttcgcgattttgacgaaaaaccgcgaaaaacgct
aaaattaaaacccgcNACATCACTACCGAAGGAAAAAAACACCTCGGAGC
TGCCATCGGTTCAGACGACTACCGCGATGAGTTTGTCACTGAGAAGATCA
GCACCTGGATCGGCGAAATTGAGCTATTGTCGGAGATTGCCAAAATCGCC
CCTCAAGAAGCCTACACTTGCTTCACGGCAGGTTACAAACACAAATTAAA
CTTCACCATGAGAACCATCCCCAACATTCAACACCACCTCTCAAAGCTAG
ACGAAACCATCACCACCAAGTTCATCCCAGCCATCACAGGAGGAATTCAT
CCAAATAATGTAGAGCGCGAGTTGTTTACCCTCCCTCCAAGCCTAGGTGG
CTTGGGAATTCCGAAGTTCAGCGATCTGGCCGAATCCGAATTCCGAAACT
CAGAATTGCTCACCGAACAGCTCCGTAAGAACATTATCAAACAAGAAGAA
AACGAAATCGACAAAGATGAAATCAAGAAATTGAAAGCGTCATTCAAACT
CAAACGCACACAGTCTCATCGACAGAAGTTGGAAAACATCAAGAACCAAT
CACAAGACGACATGAAAAAGCTCCTCGAAATCAACCGCGAGCCTGGATCA
TCCCTCTGGCTATCCCCGTCTTGATATTGCTNTAAAGAAATTTTTCGAGA
TTttcaaaccaatcaaaatacGATAAGAGGAAATCCGTTGCTAAACTCGT
CGCAATCGTAATTACAAAAATCGGAGAGATCGAATTCA Run BLAST on NCBI protein sequence of TCONS_00051199-protein >TCONS_00051199-protein ID=TCONS_00051199-protein|Name=TCONS_00051199-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MRTIPNIQHHLSKLDETITTKFIPAITGGIHPNNVERELFTLPPSLGGLG
IPKFSDLAESEFRNSELLTEQLRKNIIKQEENEIDKDEIKKLKASFKLKR
TQSHRQKLENIKNQSQDDMKKLLEINREPGSSLWLSPS Run BLAST on NCBI transcript from alignment at scaffold_2:20243..21230 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051199 ID=TCONS_00051199|Name=TCONS_00051199|organism=Clytia hemisphaerica|type=transcript|length=988bp|location=Sequence derived from alignment at scaffold_2:20243..21230 (Clytia hemisphaerica)
TGAATTCGATCTCTCCGATTTTTGTAATTACGATTGCGACGAGTTTAGCA
ACGGATTTCCTCTTATCgtattttgattggtttgaaAATCTCGAAAAATT
TCTTTANAGCAATATCAAGACGGGGATAGCCAGAGGGATGATCCAGGCTC
GCGGTTGATTTCGAGGAGCTTTTTCATGTCGTCTTGTGATTGGTTCTTGA
TGTTTTCCAACTTCTGTCGATGAGACTGTGTGCGTTTGAGTTTGAATGAC
GCTTTCAATTTCTTGATTTCATCTTTGTCGATTTCGTTTTCTTCTTGTTT
GATAATGTTCTTACGGAGCTGTTCGGTGAGCAATTCTGAGTTTCGGAATT
CGGATTCGGCCAGATCGCTGAACTTCGGAATTCCCAAGCCACCTAGGCTT
GGAGGGAGGGTAAACAACTCGCGCTCTACATTATTTGGATGAATTCCTCC
TGTGATGGCTGGGATGAACTTGGTGGTGATGGTTTCGTCTAGCTTTGAGA
GGTGGTGTTGAATGTTGGGGATGGTTCTCATGGTGAAGTTTAATTTGTGT
TTGTAACCTGCCGTGAAGCAAGTGTAGGCTTCTTGAGGGGCGATTTTGGC
AATCTCCGACAATAGCTCAATTTCGCCGATCCAGGTGCTGATCTTCTCAG
TGACAAACTCATCGCGGTAGTCGTCTGAACCGATGGCAGCTCCGAGGTGT
TTTTTTCCTTCGGTAGTGATGTNgcgggttttaattttagcgtttttcgc
ggtttttcgtcaaaatcgcgaaaatttgatcccgcgaaaaaatttgagag
ttgaaaaccgcgaaaattaattcccgcgaaatacaattttttccgatttt
atcgaaaaatttgaaaaatccctaggaaaatgaaagaaatttgtccataa
aagggcaaaaccgcgaaaattaaaacccgcgaaaattccagaatggaaaa
aaccgcgaaaattaaaacccgcgaaatgcaatttttcg Coding sequence (CDS) from alignment at scaffold_2:20243..21230 >TCONS_00051199 ID=TCONS_00051199|Name=TCONS_00051199|organism=Clytia hemisphaerica|type=CDS|length=417bp|location=Sequence derived from alignment at scaffold_2:20243..21230 (Clytia hemisphaerica)
TCAAGACGGGGATAGCCAGAGGGATGATCCAGGCTCGCGGTTGATTTCGA
GGAGCTTTTTCATGTCGTCTTGTGATTGGTTCTTGATGTTTTCCAACTTC
TGTCGATGAGACTGTGTGCGTTTGAGTTTGAATGACGCTTTCAATTTCTT
GATTTCATCTTTGTCGATTTCGTTTTCTTCTTGTTTGATAATGTTCTTAC
GGAGCTGTTCGGTGAGCAATTCTGAGTTTCGGAATTCGGATTCGGCCAGA
TCGCTGAACTTCGGAATTCCCAAGCCACCTAGGCTTGGAGGGAGGGTAAA
CAACTCGCGCTCTACATTATTTGGATGAATTCCTCCTGTGATGGCTGGGA
TGAACTTGGTGGTGATGGTTTCGTCTAGCTTTGAGAGGTGGTGTTGAATG
TTGGGGATGGTTCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051199-exon-scaffold_2-1491911889:20243..21230 | TCONS_00051199-exon-scaffold_2-1491911889:20243..21230 | Clytia hemisphaerica | exon |
| TCONS_00051199-exon-scaffold_2-1510915933:20243..21230 | TCONS_00051199-exon-scaffold_2-1510915933:20243..21230 | Clytia hemisphaerica | exon |
| TCONS_00051199-exon-scaffold_2-1575043694:20243..21230 | TCONS_00051199-exon-scaffold_2-1575043694:20243..21230 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:20243..21230 . |
Blast
The following BLAST results are available for this feature:
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