TCONS_00051199 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051199
Unique NameTCONS_00051199
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length988

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051199 ID=TCONS_00051199|Name=TCONS_00051199|organism=Clytia hemisphaerica|type=transcript|length=988bp
cgaaaaattgcatttcgcgggttttaattttcgcggttttttccattctg
gaattttcgcgggttttaattttcgcggttttgcccttttatggacaaat
ttctttcattttcctagggatttttcaaatttttcgataaaatcggaaaa
aattgtatttcgcgggaattaattttcgcggttttcaactctcaaatttt
ttcgcgggatcaaattttcgcgattttgacgaaaaaccgcgaaaaacgct
aaaattaaaacccgcNACATCACTACCGAAGGAAAAAAACACCTCGGAGC
TGCCATCGGTTCAGACGACTACCGCGATGAGTTTGTCACTGAGAAGATCA
GCACCTGGATCGGCGAAATTGAGCTATTGTCGGAGATTGCCAAAATCGCC
CCTCAAGAAGCCTACACTTGCTTCACGGCAGGTTACAAACACAAATTAAA
CTTCACCATGAGAACCATCCCCAACATTCAACACCACCTCTCAAAGCTAG
ACGAAACCATCACCACCAAGTTCATCCCAGCCATCACAGGAGGAATTCAT
CCAAATAATGTAGAGCGCGAGTTGTTTACCCTCCCTCCAAGCCTAGGTGG
CTTGGGAATTCCGAAGTTCAGCGATCTGGCCGAATCCGAATTCCGAAACT
CAGAATTGCTCACCGAACAGCTCCGTAAGAACATTATCAAACAAGAAGAA
AACGAAATCGACAAAGATGAAATCAAGAAATTGAAAGCGTCATTCAAACT
CAAACGCACACAGTCTCATCGACAGAAGTTGGAAAACATCAAGAACCAAT
CACAAGACGACATGAAAAAGCTCCTCGAAATCAACCGCGAGCCTGGATCA
TCCCTCTGGCTATCCCCGTCTTGATATTGCTNTAAAGAAATTTTTCGAGA
TTttcaaaccaatcaaaatacGATAAGAGGAAATCCGTTGCTAAACTCGT
CGCAATCGTAATTACAAAAATCGGAGAGATCGAATTCA
Run BLAST on NCBI

protein sequence of TCONS_00051199-protein

>TCONS_00051199-protein ID=TCONS_00051199-protein|Name=TCONS_00051199-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MRTIPNIQHHLSKLDETITTKFIPAITGGIHPNNVERELFTLPPSLGGLG
IPKFSDLAESEFRNSELLTEQLRKNIIKQEENEIDKDEIKKLKASFKLKR
TQSHRQKLENIKNQSQDDMKKLLEINREPGSSLWLSPS
Run BLAST on NCBI

transcript from alignment at scaffold_2:20243..21230

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051199 ID=TCONS_00051199|Name=TCONS_00051199|organism=Clytia hemisphaerica|type=transcript|length=988bp|location=Sequence derived from alignment at scaffold_2:20243..21230 (Clytia hemisphaerica)
TGAATTCGATCTCTCCGATTTTTGTAATTACGATTGCGACGAGTTTAGCA ACGGATTTCCTCTTATCgtattttgattggtttgaaAATCTCGAAAAATT TCTTTANAGCAATATCAAGACGGGGATAGCCAGAGGGATGATCCAGGCTC GCGGTTGATTTCGAGGAGCTTTTTCATGTCGTCTTGTGATTGGTTCTTGA TGTTTTCCAACTTCTGTCGATGAGACTGTGTGCGTTTGAGTTTGAATGAC GCTTTCAATTTCTTGATTTCATCTTTGTCGATTTCGTTTTCTTCTTGTTT GATAATGTTCTTACGGAGCTGTTCGGTGAGCAATTCTGAGTTTCGGAATT CGGATTCGGCCAGATCGCTGAACTTCGGAATTCCCAAGCCACCTAGGCTT GGAGGGAGGGTAAACAACTCGCGCTCTACATTATTTGGATGAATTCCTCC TGTGATGGCTGGGATGAACTTGGTGGTGATGGTTTCGTCTAGCTTTGAGA GGTGGTGTTGAATGTTGGGGATGGTTCTCATGGTGAAGTTTAATTTGTGT TTGTAACCTGCCGTGAAGCAAGTGTAGGCTTCTTGAGGGGCGATTTTGGC AATCTCCGACAATAGCTCAATTTCGCCGATCCAGGTGCTGATCTTCTCAG TGACAAACTCATCGCGGTAGTCGTCTGAACCGATGGCAGCTCCGAGGTGT TTTTTTCCTTCGGTAGTGATGTNgcgggttttaattttagcgtttttcgc ggtttttcgtcaaaatcgcgaaaatttgatcccgcgaaaaaatttgagag ttgaaaaccgcgaaaattaattcccgcgaaatacaattttttccgatttt atcgaaaaatttgaaaaatccctaggaaaatgaaagaaatttgtccataa aagggcaaaaccgcgaaaattaaaacccgcgaaaattccagaatggaaaa aaccgcgaaaattaaaacccgcgaaatgcaatttttcg

Coding sequence (CDS) from alignment at scaffold_2:20243..21230

>TCONS_00051199 ID=TCONS_00051199|Name=TCONS_00051199|organism=Clytia hemisphaerica|type=CDS|length=417bp|location=Sequence derived from alignment at scaffold_2:20243..21230 (Clytia hemisphaerica)
TCAAGACGGGGATAGCCAGAGGGATGATCCAGGCTCGCGGTTGATTTCGA
GGAGCTTTTTCATGTCGTCTTGTGATTGGTTCTTGATGTTTTCCAACTTC
TGTCGATGAGACTGTGTGCGTTTGAGTTTGAATGACGCTTTCAATTTCTT
GATTTCATCTTTGTCGATTTCGTTTTCTTCTTGTTTGATAATGTTCTTAC
GGAGCTGTTCGGTGAGCAATTCTGAGTTTCGGAATTCGGATTCGGCCAGA
TCGCTGAACTTCGGAATTCCCAAGCCACCTAGGCTTGGAGGGAGGGTAAA
CAACTCGCGCTCTACATTATTTGGATGAATTCCTCCTGTGATGGCTGGGA
TGAACTTGGTGGTGATGGTTTCGTCTAGCTTTGAGAGGTGGTGTTGAATG
TTGGGGATGGTTCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032449XLOC_032449Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051199-proteinTCONS_00051199-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051199-exon-scaffold_2-1491911889:20243..21230TCONS_00051199-exon-scaffold_2-1491911889:20243..21230Clytia hemisphaericaexon
TCONS_00051199-exon-scaffold_2-1510915933:20243..21230TCONS_00051199-exon-scaffold_2-1510915933:20243..21230Clytia hemisphaericaexon
TCONS_00051199-exon-scaffold_2-1575043694:20243..21230TCONS_00051199-exon-scaffold_2-1575043694:20243..21230Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:20243..21230 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.33522 0.880959 1.99049 2.27659 1.165 0.964406 2.0295 2.46196 1.19899 1.95067 1.8116 1.59737 1.05419 1.18267 1.16721 1.2348 1.71442 1.57947 2.35225 2.5916 1.61596 2.05586 0.79567 1.05773 3.29064 1.9083 1.89156 1.53357 1.07972 1.02821
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051199 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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