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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051196 ID=TCONS_00051196|Name=TCONS_00051196|organism=Clytia hemisphaerica|type=transcript|length=1672bpRun BLAST on NCBI protein sequence of TCONS_00051196-protein >TCONS_00051196-protein ID=TCONS_00051196-protein|Name=TCONS_00051196-protein|organism=Clytia hemisphaerica|type=polypeptide|length=537bp MENTKITMKSKIEITVKEEEIEEEEEQKPQTDAIITSTYQMAISYTNTFPRun BLAST on NCBI transcript from alignment at scaffold_2:432157..441892- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051196 ID=TCONS_00051196|Name=TCONS_00051196|organism=Clytia hemisphaerica|type=transcript|length=9736bp|location=Sequence derived from alignment at scaffold_2:432157..441892- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_2:432157..441892- >TCONS_00051196 ID=TCONS_00051196|Name=TCONS_00051196|organism=Clytia hemisphaerica|type=CDS|length=6444bp|location=Sequence derived from alignment at scaffold_2:432157..441892- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00051196 vs. Swiss-Prot (Human)
Match: ZN233 (Zinc finger protein 233 OS=Homo sapiens GN=ZNF233 PE=2 SV=3) HSP 1 Score: 204.912 bits (520), Expect = 3.293e-57 Identity = 100/245 (40.82%), Postives = 142/245 (57.96%), Query Frame = 3
Query: 939 CKICDRDFTWFGNFQKHVLQHGNIKENDYFFPVDNL-----AEEHMISKESNNNFRCKLCNKTFTRVSSLKTHIRMHNGLRPFKCKECELAFTTNRALKMHSRIHSGERPYKCGLCDKTFTRKDELQAHTYLHKGEKPYKCEVCSSAFVRQGHLQRHMLTHASEKPYKCKLCPKSFTQYRNLQTHIYKHTGERPYKCQYCGKGFTQHGTVQAHERTHTGMKPYACDHCDKRFITSSHLRWHVKKH 1658
C + D+ F+ Q H Q G+ ++ Y + V + + H ++C++C+K F++ S+L+ H R+H G +P+KC C+ F+ N L+ H R+H+GE+PYKC C K F++ LQAH +HKGEKPYKCE C F + HLQ H H E PYKC +C K F+ +LQ H HTGE+PYKC+ C KGF + + H+R HTG KPY C C K F +SHL+ H + H
Sbjct: 400 CDVYDKGFSQTSQLQAH--QRGHSRDKTYKWEVSDRIFNRNSGLHQRVHTGEKPYKCEVCDKGFSKASNLQAHQRIHTGEKPYKCDVCDKNFSRNSHLQAHQRVHTGEKPYKCDTCGKDFSQISHLQAHQRVHKGEKPYKCETCGKGFSQSSHLQDHQQVHTGENPYKCDVCGKGFSWSSHLQAHQRVHTGEKPYKCEECRKGFIWNSYLHVHQRIHTGEKPYKCGMCGKSFSQTSHLQAHQRVH 642 HSP 2 Score: 187.578 bits (475), Expect = 3.509e-51 Identity = 96/233 (41.20%), Postives = 123/233 (52.79%), Query Frame = 3
Query: 921 GKGKYICKICDRDFTWFGNFQKHVLQHGNIKENDYFFPVDNLAEEHMISKESNNNFRCKLCNKTFTRVSSLKTHIRMHNGLRPFKCKECELAFTTNRALKMHSRIHSGERPYKCGLCDKTFTRKDELQAHTYLHKGEKPYKCEVCSSAFVRQGHLQRHMLTHASEKPYKCKLCPKSFTQYRNLQTHIYKHTGERPYKCQYCGKGFTQHGTVQAHERTHTGMKPYACDHCDKRF 1619
G+ Y C++CD+ F+ N Q H H K ++C +C+K F+R S L+ H R+H G +P+KC C F+ L+ H R+H GE+PYKC C K F++ LQ H +H GE PYKC+VC F HLQ H H EKPYKC+ C K F L H HTGE+PYKC CGK F+Q +QAH+R HTG KPY C C K F
Sbjct: 448 GEKPYKCEVCDKGFSKASNLQAHQRIHTGEKP-----------------------YKCDVCDKNFSRNSHLQAHQRVHTGEKPYKCDTCGKDFSQISHLQAHQRVHKGEKPYKCETCGKGFSQSSHLQDHQQVHTGENPYKCDVCGKGFSWSSHLQAHQRVHTGEKPYKCEECRKGFIWNSYLHVHQRIHTGEKPYKCGMCGKSFSQTSHLQAHQRVHTGEKPYKCFVCGKGF 657 HSP 3 Score: 150.599 bits (379), Expect = 8.964e-39 Identity = 86/219 (39.27%), Postives = 116/219 (52.97%), Query Frame = 3
Query: 1080 NNFRCKLCNKTFTRVSSLKTHIRMHNGLRPFKCKECELAFTTNRALKMHSRIHSGERPYKCGLCDKTFTRKDELQAH--------TY------------------LHKGEKPYKCEVCSSAFVRQGHLQRHMLTHASEKPYKCKLCPKSFTQYRNLQTHIYKHTGERPYKCQYCGKGFTQHGTVQAHERTHTGMKPYACDHCDKRFITSSHLRWHVKKH 1658
N +RC++ ++ + S L +H H G + C C F + +H +GER KC + DK F++ +LQAH TY +H GEKPYKCEVC F + +LQ H H EKPYKC +C K+F++ +LQ H HTGE+PYKC CGK F+Q +QAH+R H G KPY C+ C K F SSHL+ H + H
Sbjct: 340 NLYRCQVYARSSNQNSCLPSHELTHPGEKLCTCGRCGKGFHHSLDFDIHCVDSAGERACKCDVYDKGFSQTSQLQAHQRGHSRDKTYKWEVSDRIFNRNSGLHQRVHTGEKPYKCEVCDKGFSKASNLQAHQRIHTGEKPYKCDVCDKNFSRNSHLQAHQRVHTGEKPYKCDTCGKDFSQISHLQAHQRVHKGEKPYKCETCGKGFSQSSHLQDHQQVH 558 HSP 4 Score: 113.62 bits (283), Expect = 2.120e-26 Identity = 56/150 (37.33%), Postives = 79/150 (52.67%), Query Frame = 3
Query: 918 QGKGKYICKICDRDFTWFGNFQKHVLQHGNIKENDYFFPVDNLAEEHMISKESNNNFRCKLCNKTFTRVSSLKTHIRMHNGLRPFKCKECELAFTTNRALKMHSRIHSGERPYKCGLCDKTFTRKDELQAHTYLHKGEKPYKCEVCSSAF 1367
+G+ Y C+ C + F+ + Q H H N ++C +C K F+ S L+ H R+H G +P+KC+EC F N L +H RIH+GE+PYKCG+C K+F++ LQAH +H GEKPYKC VC F
Sbjct: 531 KGEKPYKCETCGKGFSQSSHLQDHQQVH-----------------------TGENPYKCDVCGKGFSWSSHLQAHQRVHTGEKPYKCEECRKGFIWNSYLHVHQRIHTGEKPYKCGMCGKSFSQTSHLQAHQRVHTGEKPYKCFVCGKGF 657 HSP 5 Score: 87.8113 bits (216), Expect = 4.644e-18 Identity = 63/211 (29.86%), Postives = 90/211 (42.65%), Query Frame = 3
Query: 1104 NKTFTRVSSLKTHIRMHNGLRPFKCKECELAFTTNRALKMHSRIHSGERPYKCGLCDKTFTRKDELQAHTYLHKGEKPYKCEVCSSAFVRQGHLQRHMLTHASEKPYKCKLCPKSFTQYRNLQTHIYKHTGERPYKCQYCGKGFTQHGTVQA--------------------------HERTHTGMKPYACDHCDKRFITSSHLRWHVKKH 1658
K + S+L+ H ++H +P E + L H H GE+ Y+ G + F++ LQ H + GE Y+C+V + + + L H LTH EK C C K F + H GER KC KGF+Q +QA H+R HTG KPY C+ CDK F +S+L+ H + H
Sbjct: 264 GKGLSVGSNLELHQQLHLRDKPHVNVEYGKGIGYSSGLPRHQCFHIGEKCYRNGDSGEGFSQGSHLQPHQRVSTGENLYRCQVYARSSNQNSCLPSHELTHPGEKLCTCGRCGKGFHHSLDFDIHCVDSAGERACKCDVYDKGFSQTSQLQAHQRGHSRDKTYKWEVSDRIFNRNSGLHQRVHTGEKPYKCEVCDKGFSKASNLQAHQRIH 474 The following BLAST results are available for this feature:
BLAST of TCONS_00051196 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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