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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051195 ID=TCONS_00051195|Name=TCONS_00051195|organism=Clytia hemisphaerica|type=transcript|length=3209bpRun BLAST on NCBI protein sequence of TCONS_00051195-protein >TCONS_00051195-protein ID=TCONS_00051195-protein|Name=TCONS_00051195-protein|organism=Clytia hemisphaerica|type=polypeptide|length=963bp MSSRKTENYEHQPEDGGQKQNSGEDYDIGGIIFPIAPKPSYENAEQSGINRun BLAST on NCBI transcript from alignment at scaffold_2:328428..391700- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051195 ID=TCONS_00051195|Name=TCONS_00051195|organism=Clytia hemisphaerica|type=transcript|length=63273bp|location=Sequence derived from alignment at scaffold_2:328428..391700- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_2:328428..391700- >TCONS_00051195 ID=TCONS_00051195|Name=TCONS_00051195|organism=Clytia hemisphaerica|type=CDS|length=52056bp|location=Sequence derived from alignment at scaffold_2:328428..391700- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00051195 vs. Swiss-Prot (Human)
Match: CC146 (Coiled-coil domain-containing protein 146 OS=Homo sapiens GN=CCDC146 PE=1 SV=2) HSP 1 Score: 633.639 bits (1633), Expect = 0.000e+0 Identity = 390/932 (41.85%), Postives = 604/932 (64.81%), Query Frame = 1
Query: 265 IFPIAPKPSYENAEQSGINSTPAFQCIDDLLTEGKITGAKAAWYKSKYQDLLQQLKLTRETESKYLHEGKELMQLVQKQQSDIEQGELFPAGVDNETNRLRADLLKSSNELAACNERIYQLDFNMNGLKEEKRLLASEFERLPXXXXXXXXXXXYTQEIEELRLDIAQRLHECKSLKDEQGTRNGQAELIHGDLEKLESDEQKLKDKLVKIYGEPAHISKQCELVNRQIRDLLEKNKLNEANVTEVDAEFMKFCAKKDVLLIEKEQLAKALENQRILYEEKEKEVDLLMKECDLAKERQAELLGDRTSLDLKIKHVKVDKKTEHDAHARKLREKDRDLKILKKADVHLKVMKDGLAHTKNIYDKIKIEVDLQPRDDGTLMEKRRELQREVDIAKRAFTQQNSLTLHEKQVVEKGCQEEDRLLCEQGQLRIDVIDLSRLSQIKTDEREQKARDFLKAELRYHKAIEDLKTKELSIQDNAKKLTEVQRRLEDFAKLYDIIKNERNKCVNLIQTSTQRAAEMQEKIKILQNEIEILRTAAAAKDRQYQKAKLKHSNAVVIRDSLRNEVSKQQISAXXXXXXXXXXXXAISKLNDMINKAEENMVELRRQYELSVQERNKRGIQLIERNEEVCVLYEKINVQGSVIRNGDMEMQSREEEMRFLKMEASDLRRQIDLLKGSLPNKQALDRELTTLQIQLAQCHDYIVDLEHSLEDSGNVDRMRFLDGKDPTRDELATKVETLGXXXXXXXXXXXXXXXXXXQITRLVSKVKSKTNNDKEDTLVLAKSVNEVQSKIKDTTRKMMAMVSELSMNQANTIKLGQDVKAKETLLEQCYARMERGQPPSDEIEDEWLNGLKKEINRIQAVRERKKDEETMEQYQIVGGITTTAEPRPNAYIPDDGNDLPLPRPYGASAPFKPTEPGSNMRHIRKPVIKPIEI 3060
I+ I P + ++ ++ TPAF + +L GK+ G + A K+KY L + T+E+E + L K + +Q+QQ ++Q + FP E +++R LLK NE A ER + + +N LKEEK ++ EFE++ K E++KK+K + EELR +I Q+ E K+L+++ ++ Q +LE+L + LKD++ P I K+ E + R+ ++ +K + E V ++ K K ++ EKE + K +E +R L E KE+E + L+K +LA+E +A L +R LDL +++ +DK+ HD +RK REK+RD + L+K ++ LKV D L T+ ++ ++ +E++ P+DD TL E+RREL +EV++AKR QQ ++ E ++VE+ EE++LL EQ ++ V++L R++QIK DE+EQK++DFLKA+ +Y ++++K K+L I+ + KK E+ RRL +FAKLYD I+NERNK VNL+ + Q+ E++E+ K+ NE+EILR +A +++R+ Q + LKH+N V IR+S++N+V K +E++E+ E Q I +L + I EE MV+LR++YE +VQ RN+ G+QLIER EE+C+ YEKIN+Q + NG++E+ EE+++FLKM+ ++ +RQI + + LP K++LD +L LQIQ +QC D I DLE +R RFL GKD T E+ K++ L L+LAKKEE+LLEK+ ++EQ++RL ++ SKT K+DTL+LAK +N Q +IK+ T KMMA+V+ELSM QA TI+L ++V+ KE + C +R+E+G P + EIE EWL L+ E A+ E+ ++ + Q+ G+ TTAE RPNAYIP+ LPLP+PYGA APFKP+EPG+NMRHIRKPVIKP+EI
Sbjct: 24 IYAIVPTINIQDERFVDLSETPAFIFLHELHAMGKLPGTRMAALKAKYTLLHDAVMSTQESEVQLLQNAKRFTEQIQQQQFHLQQADNFPEAFSTEVSKMREQLLKYQNEYNAVKEREFHNQYRLNSLKEEKIIIVKEFEKITKPGEMEKKMKILRESTEELRKEIMQKKLEIKNLREDLASKQKQLLKEQKELEELLGHQVVLKDEVAHHQTIPVQIGKEIEKITRKKVEMEKKKIVLEQEVKTLNDSLKKVENKVSAIVDEKENVIKEVEGKRALLEIKEREHNQLVKLLELARENEATSLTERGILDLNLRNSLIDKQNYHDELSRKQREKERDFRNLRKMELLLKVSWDALRQTQALHQRLLLEMEAIPKDDSTLSERRRELHKEVEVAKRNLAQQKIISEMESKLVEQQLAEENKLLKEQENMKELVVNLLRMTQIKIDEKEQKSKDFLKAQQKYTNIVKEMKAKDLEIRIHKKKKCEIYRRLREFAKLYDTIRNERNKFVNLLHKAHQKVNEIKERHKMSLNELEILRNSAVSQERKLQNSMLKHANNVTIRESMQNDVRKIVSKLQEMKEKKEAQLNNIDRLANTITMIEEEMVQLRKRYEKAVQHRNESGVQLIEREEEICIFYEKINIQEKMKLNGEIEIHLLEEKIQFLKMKIAEKQRQICVTQKLLPAKRSLDADLAVLQIQFSQCTDRIKDLEKQFVKPDGENRARFLPGKDLTEKEMIQKLDKLELQLAKKEEKLLEKDFIYEQVSRLTDRLCSKTQGCKQDTLLLAKKMNGYQRRIKNATEKMMALVAELSMKQALTIELQKEVREKEDFIFTCNSRIEKGLPLNKEIEKEWLKVLRDEEMHALAIAEKSQEFLEADNRQLPNGVYTTAEQRPNAYIPEADATLPLPKPYGALAPFKPSEPGANMRHIRKPVIKPVEI 955 The following BLAST results are available for this feature:
BLAST of TCONS_00051195 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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