|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051191 ID=TCONS_00051191|Name=TCONS_00051191|organism=Clytia hemisphaerica|type=transcript|length=7791bpRun BLAST on NCBI transcript from alignment at scaffold_2:238965..291047- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051191 ID=TCONS_00051191|Name=TCONS_00051191|organism=Clytia hemisphaerica|type=transcript|length=52083bp|location=Sequence derived from alignment at scaffold_2:238965..291047- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00051191 vs. Swiss-Prot (Human)
Match: BIG1 (Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Homo sapiens GN=ARFGEF1 PE=1 SV=2) HSP 1 Score: 1791.16 bits (4638), Expect = 0.000e+0 Identity = 936/1510 (61.99%), Postives = 1121/1510 (74.24%), Query Frame = 3
Query: 1434 DDAQTVVSEDGVESANYA--KSAVSFPHILQKDAFLVFRSLCKLSMKQLPDAPYDPKSHEXXXXXXXXXXXXXXXQNAGEVFKTSEMFISAIKQYLCVALSKNGVSSIPQVFEXXXXXXXXXXXDFKTHLKMQIEVFFREIFLNILETSTSSFQHKWMVMQALTKICQDAQTVVDVYVNYDCDLQSANIFERLVYDLSKIAQGRHAMELGATPAQEKKIRVIGIECLVSILKCMVTWSKDLYMNPYNQVSHTPEGGLLDKPDSKPSSTL---EENSHGGSQQSLNSTN--------TVSSASDNPEQIIVQKQRKELVEEGIKRFNNKSPMKGVKYLQEQGLLESTPIAVAEFVMSDDRLDKTMVGELLGDFSDFAKEVMYRYVDMMDFEGVDFVSSLRMFLENFRLPGEAQKIDRLMEKFASRYCECNIEDEVFTSADAAYVLAYSIIMLTTDLHSSQVKRKMTKEQYITMNRGINDGKDLPQEYLEAIYEDIQENEIQMKH------PQKAQNQRPATLFLMTEKQRRMLYLQEMESMAQIAKSMMEDISHVQTSFIQATHIQHAKPMFKIAWTPVLAAFSIGLQDNEDANLINLCLDGMRCAIRISCIFQLQLERDAYIQALCQFSMLMANAVITEMKAKNIDTIKTLISVAYTDGNYLAHSWLEIMQCISHLELLQLIGTGIRPRYV-----------TGGSSNAPVVNVG-GLAGSASTGLQSNGVIDSKKFSSIQESMGETSSQSVVVAVDRIFTGSIRLDGDAIVDFVTALVSVSQDELVAPSQPRMYSLQKIVEIAYYNMGRIRLQWSRIWNVLGDYFNKVGCSPNEEIAFFCVDSLRQLSMKFLEKGELSNFHFQKDFLRPFEYIMKKSGSSTIRDMVVRCVAQMVNSQAKNIKSGWKNVFSVFHLAASDLDEGIVELAFQTTA----IIFEKHFSATVDSFQDAVKCLSEFACNAAFPDTSMEAIRLIRHCAKHVYENPNMFKEHFAEDAGISDTDRVWVRGWFPVIFELSCIINRCKLDVRTRALTVMFEILKIYGHTYHKHWWKEVFKVVFRIFDGMKLPDLSIEWAEKAEWMTTTCNHALYAIIDVFTQYFEDLADVLLDDMYGHLVWCVKQDNEQLARSGVNCLENLVVSNGQKFTPEIWTKTTKCIRLIFESSVPHNLISWKP---ENYTPPEHPVGTPTHHAKSPSTPSGTGHVRRPSRTPSRLTVDSVPGDFHYDVSEGDDISLHNFPQYPAHLQRFDSNTSLNAITRQKISPEKTMFNSMLIKCVVQLELIQTIDNIVFFPTTSKKEDADNMAAAQAFFDNIFPEGNFKSTEAEQVSSLLDVGMFPHLSSEQLLLFATCLHEAHIFARDFNCNYEQRNLLLKAGFTKGKSLPNLLKQETTSLASLLRILFRIYSEESRQEAWESVEEKLKRVTAEAFEYFHNLESSSHRKAWTSXXXXXXXXXXXXDDQRFSRHVNSFYSRLCDLLVHELESELRVVIRKIFLRFGQVHSVS 5849
DD +V S D ES N + F HILQKDAFLVFRSLCKLSMK L D P DPKSHELRSK+LSL+LLL+ LQNAG +F+T+EMFI+AIKQYLCVALSKNGVSS+P+VFELSLS+FLTLLS+FKTHLKMQIEVFF+EIFL ILETSTSSF HKWMV+Q LT+IC DAQ+VVD+YVNYDCDL +ANIFERLV DLSKIAQGR + ELG + QE +R G+ECLVSILKCMV WSKD Y+NP +Q + E KP + S + E + GS SL ST+ T S +DNPEQ V KQ+KE++E+GI FN K P +G++YLQEQG+L +TP +A+F+ ++RLD T VGE LGD F KEVMY YVD DF G DFVS+LRMFLE FRLPGEAQKIDRLMEKFA+RY ECN +F SAD AYVLAYSIIMLTTDLHS QVK KMTKEQYI MNRGIND KDLP+EYL AIY +I +I MK P K+ Q A+ EKQRR+LY EME MA+ AK++ME +SHVQ F ATH++H +PMFK+AWTP LAAFS+GLQD +D + +LCL+G+RCAIRI+CIF +QLERDAY+QAL +F++L ++ ITEMK KNIDTIKTLI+VA+TDGNYL +SW EI++CIS LEL QLIGTG++PRY+ TG AP VG GL G G +D K+ +SIQES+GETSSQSVVVAVDRIFTGS RLDG+AIVDFV L +VS DEL++ + PRM+SLQKIVEI+YYNMGRIRLQWSRIW V+GD+FNKVGC+PNE++A F VDSLRQLSMKFLEKGEL+NF FQKDFLRPFE+IMK++ S TIRDMVVRC+AQMVNSQA NI+SGWKN+FSVFHLAASD DE IVELAFQTT ++FEKHF AT+DSFQDAVKCLSEFACNAAFPDTSMEAIRLIRHCAK+V + P FKE+ ++D ++ DRVWVRGWFP++FELSCIINRCKLDVRTR LTVMFEI+K YGHTY KHWW+++F++VFRIFD MKLP+ + EKAEWMTTTCNHALYAI DVFTQY E L+DVLLDD++ L WCV+QDNEQLARSG NCLEN+V+ NG+KFT EIW KT C IF++++PH L++W+P E PP PV +P T S+ +V D H + S+ N PQ P + N ++ I PE+ +F ++LIKCVVQLELIQTIDNIVFFP TSKKEDA+N+AAAQ + + + D GM+ L+S+QL CL E+H FA+ FN N EQR L KAGF KGKS PNLLKQET+SLA LRILFR+Y +ESR AWE V+++L V +EA YF L S SHR+AWT++L+L LTK+LK+ D RF H + +Y LC+++ +L ELR V+R+ FLR G V +S
Sbjct: 390 DDRLSVSSNDTQESGNSSGPSPGAKFSHILQKDAFLVFRSLCKLSMKPLSDGPPDPKSHELRSKILSLQLLLSILQNAGPIFRTNEMFINAIKQYLCVALSKNGVSSVPEVFELSLSIFLTLLSNFKTHLKMQIEVFFKEIFLYILETSTSSFDHKWMVIQTLTRICADAQSVVDIYVNYDCDLNAANIFERLVNDLSKIAQGRGSQELGMSNVQELSLRKKGLECLVSILKCMVEWSKDQYVNPNSQTTLGQE-----KPSEQEMSEIKHPETINRYGSLNSLESTSSSGIGSYSTQMSGTDNPEQFEVLKQQKEIIEQGIDLFNKK-PKRGIQYLQEQGMLGTTPEDIAQFLHQEERLDSTQVGEFLGDNDKFNKEVMYAYVDQHDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFASADTAYVLAYSIIMLTTDLHSPQVKNKMTKEQYIKMNRGINDSKDLPEEYLSAIYNEIAGKKISMKETKELTIPTKSSKQNVAS-----EKQRRLLYNLEMEQMAKTAKALMEAVSHVQAPFTSATHLEHVRPMFKLAWTPFLAAFSVGLQDCDDTEVASLCLEGIRCAIRIACIFSIQLERDAYVQALARFTLLTVSSGITEMKQKNIDTIKTLITVAHTDGNYLGNSWHEILKCISQLELAQLIGTGVKPRYISGTVRGREGSLTGTKDQAPDEFVGLGLVG---------GNVDWKQIASIQESIGETSSQSVVVAVDRIFTGSTRLDGNAIVDFVRWLCAVSMDELLSTTHPRMFSLQKIVEISYYNMGRIRLQWSRIWEVIGDHFNKVGCNPNEDVAIFAVDSLRQLSMKFLEKGELANFRFQKDFLRPFEHIMKRNRSPTIRDMVVRCIAQMVNSQAANIRSGWKNIFSVFHLAASDQDESIVELAFQTTGHIVTLVFEKHFPATIDSFQDAVKCLSEFACNAAFPDTSMEAIRLIRHCAKYVSDRPQAFKEYTSDDMNVAPEDRVWVRGWFPILFELSCIINRCKLDVRTRGLTVMFEIMKTYGHTYEKHWWQDLFRIVFRIFDNMKLPE---QQTEKAEWMTTTCNHALYAICDVFTQYLEVLSDVLLDDIFAQLYWCVQQDNEQLARSGTNCLENVVILNGEKFTLEIWDKTCNCTLDIFKTTIPHALLTWRPNSGETAPPPPSPVS------------------EKPLDTISQKSV-----DIHDSIQPR---SVDNRPQAPL-VSASAVNEEVSKIKSTAKFPEQKLFAALLIKCVVQLELIQTIDNIVFFPATSKKEDAENLAAAQR-----------DAVDFDVRVDTQDQGMYRFLTSQQLFKLLDCLLESHRFAKAFNSNNEQRTALWKAGF-KGKSKPNLLKQETSSLACGLRILFRMYMDESRVSAWEEVQQRLLNVCSEALSYFLTLTSESHREAWTNLLLLFLTKVLKISDNRFKAHASFYYPLLCEIMQFDLIPELRAVLRRFFLRIGVVFQIS 1837 HSP 2 Score: 225.328 bits (573), Expect = 1.239e-58 Identity = 134/292 (45.89%), Postives = 181/292 (61.99%), Query Frame = 3
Query: 216 KVKLGFLKKFLEKILSERDLKKKDYAQLKKLCEETLDKV-----------GNVSGGESE-----------DADLEQFFPAIEMACQQTKSPKIVCSALDCLQKMIAYGYTNG--PDSQRPGKQIIDKIIETVCGCFNGTLTDEGVQLQIIKALLTAVTSPACEVHEGTLLQSVRTCYNIYLASKNLINQTTAKATLTQMISVIFVKMEAQG----------NVGQTNNLVVSEPSGEAPE-------PQKPSEHQETNENVDVTVNGEASDKN-DDDRVDQNESSINTQDSD 965
K K FL + LEKIL+++++KK ++QL+K CE L+++ G G S +AD ++F E+ACQ +K P+IV ++LDCLQK+IAYG+ G PDS PGK++ID+IIET+CGCF G TDEGVQLQIIKALLTAVTS E+HEGT+LQ+VRTCYNIYLASKNLINQTTAKATLTQM++VIF +ME Q Q ++L+ S S PE P + +H D+ ++ DK+ DD +N S I++ +++
Sbjct: 6 KTKNMFLTRALEKILADKEVKKAHHSQLRKACEVALEEIKAETEKQSPPHGEAKAGSSTLPPVKSKTNFIEAD--KYFLPFELACQ-SKCPRIVSTSLDCLQKLIAYGHLTGNAPDSTTPGKKLIDRIIETICGCFQGPQTDEGVQLQIIKALLTAVTSQHIEIHEGTVLQAVRTCYNIYLASKNLINQTTAKATLTQMLNVIFARMENQALQEAKQMEKERHRQHHHLLQSPVSHHEPESPQLRYLPPQTVDHISQEHEGDLDLHTNDVDKSLQDDTEPENGSDISSAENE 294 The following BLAST results are available for this feature:
BLAST of TCONS_00051191 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.