|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051181 ID=TCONS_00051181|Name=TCONS_00051181|organism=Clytia hemisphaerica|type=transcript|length=469bp
GAGCACTATTAATGTCGTTAATTGTtgtaaaaaaatgtcttgagaATATC
AAAGCTTGATTCGAAGACTATAaaagtcaaaagtaaagttAACATAGTAC
ATACTTTCAAGAGGGTGAGAAATCTATACAAGAGACGTTTAGGCgaagaa
tctctaaccttttcaACAAAATGGAAAAACTTTTCGTAATGGCTATTTTG
CTTATTGCAGTGATTTCTACCTCAGATGCGAAGGCTATCAGCGATAAAGA
TTTACTGGACGCATTAAACGACTTTCTGCATAGAGACgcccaaGGACcca
agtcgttcgtccaaggtggagacgaAAAATCTTTGAATCACAAAGTCAAT
TCTGCTGAAACGGAAAAAAGGAACGTTattgttaatgttaatgtttaCTA
AACTCAAattattttactaaaatttgtCTCTTTTGAAAAGAATATGGAAA
TGCTAATGAAACTAAAACA Run BLAST on NCBI transcript from alignment at scaffold_2:468182..470737+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051181 ID=TCONS_00051181|Name=TCONS_00051181|organism=Clytia hemisphaerica|type=transcript|length=2556bp|location=Sequence derived from alignment at scaffold_2:468182..470737+ (Clytia hemisphaerica)
GAGCACTATTAATGTCGTTAATTGTtgtaaaaaaatgtcttgagaATATC
AAAGCTTGATTCGAAGACTATAaaagtcaaaagtaaagttAACATAGTAC
ATACTTTCAAGAGGGTGAGAAATCTATACAAGAGACGTTTAGGCgaagaa
tctctaaccttttcaACAAAATGGAAAAACTTTTCGTAATGGCTATTTTG
CTTATTGCAGTGATTTCTACCTCAGATGCGAAGGCTATCAGCGATAAAGA
TTTACGTAAGTTGAAAAACTTTTCAGTTCTTTACTCTTTCACTCTATGTG
ACATTCTCaaactttaaaactttttaaacctGGCTATGATAGCTCTTTTC
AGTAAGTTATAGCCGAAGGCTATTAGATCTGTATCTTCTAATTAAGATTT
GAAGCCACTTAAATATTATTCAAAGCCCGAAAGGCTTAGAGAGGAATCTT
GAAACTCCCATaagcaagaaaaaatgaagcccTAAGATTTGCGCCACTTT
AGCAATGACTGATTGAATCTAGTACTGTCTTAGTTTTCATGCAGCGAATT
TTTCTATTTCTCCCCTTTTTAAATCTTAGACTAAAAAAGATTAAGGTCAT
TAAGAAGTTTAAGCAGTCCCAAGTGAACTCTAGGGAACGTGTTTGTGAAA
ACTATGTTATAGTTTACTTTAATTCTCGAGTAATACTCTGcgatttctat
ttttttcttacAGTGGACGCATTAAACGACTTTCTGCATAGAGACAtcca
aggacccaagtcgttcgtccaaggtggagacgctCAAGGACNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCGTTCGGccaaggtggagac
gcccaaggacccaagtcgttcgtccaaggtggagacgcccaaggacccaa
gtcgttcggccaaggtggagacgctcaaggacccaagtcgtttgTTCAAG
GTGGAGACGctcaaggacccaagtcgttcgttcaaggtggagacgcccaa
ggacccaagtcgttcgttcaaggtggagacgcccaaGGACCTAAGTCGTT
CGTTCAAGGTGGAGACGCTCAAGGACCCAAATCGTTCGTTCAAGGTGGAG
ACGCTCAAGGACCCAaatcgttcgtccaaggtggagacgctCAAGGACCC
Aaatcgttcgtccaaggtggagacgctcaaggacccaagtcgttcgtcca
aggtggagacgaAAAATCTTTGAATCACAAAGTCAATTCTGCTGAAACGG
AAAAAAGGAACGTTattgttaatgttaatgtttaCTAAACTCAAattatt
ttactaaaatttgtCTCTTTTGAAAAGAATATGGAAATGCTAATGAAACT
AAAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051181-exon-scaffold_2-1491911889:468182..468436 | TCONS_00051181-exon-scaffold_2-1491911889:468182..468436 | Clytia hemisphaerica | exon |
| TCONS_00051181-exon-scaffold_2-1510915933:468182..468436 | TCONS_00051181-exon-scaffold_2-1510915933:468182..468436 | Clytia hemisphaerica | exon |
| TCONS_00051181-exon-scaffold_2-1575043694:468182..468436 | TCONS_00051181-exon-scaffold_2-1575043694:468182..468436 | Clytia hemisphaerica | exon |
| TCONS_00051181-exon-scaffold_2-1491911889:468895..468926 | TCONS_00051181-exon-scaffold_2-1491911889:468895..468926 | Clytia hemisphaerica | exon |
| TCONS_00051181-exon-scaffold_2-1510915933:468895..468926 | TCONS_00051181-exon-scaffold_2-1510915933:468895..468926 | Clytia hemisphaerica | exon |
| TCONS_00051181-exon-scaffold_2-1575043694:468895..468926 | TCONS_00051181-exon-scaffold_2-1575043694:468895..468926 | Clytia hemisphaerica | exon |
| TCONS_00051181-exon-scaffold_2-1491911889:470412..470421 | TCONS_00051181-exon-scaffold_2-1491911889:470412..470421 | Clytia hemisphaerica | exon |
| TCONS_00051181-exon-scaffold_2-1510915933:470412..470421 | TCONS_00051181-exon-scaffold_2-1510915933:470412..470421 | Clytia hemisphaerica | exon |
| TCONS_00051181-exon-scaffold_2-1575043694:470412..470421 | TCONS_00051181-exon-scaffold_2-1575043694:470412..470421 | Clytia hemisphaerica | exon |
| TCONS_00051181-exon-scaffold_2-1491911889:470566..470737 | TCONS_00051181-exon-scaffold_2-1491911889:470566..470737 | Clytia hemisphaerica | exon |
| TCONS_00051181-exon-scaffold_2-1510915933:470566..470737 | TCONS_00051181-exon-scaffold_2-1510915933:470566..470737 | Clytia hemisphaerica | exon |
| TCONS_00051181-exon-scaffold_2-1575043694:470566..470737 | TCONS_00051181-exon-scaffold_2-1575043694:470566..470737 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:468182..470737 + |
Blast
The following BLAST results are available for this feature:
|
