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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051177 ID=TCONS_00051177|Name=TCONS_00051177|organism=Clytia hemisphaerica|type=transcript|length=696bp
GTATAGAATTGATTGGAAATATCGGCTGTGCAAGACCACCCTCTTTAGTG
GATCGAATCTCCTTAGCCAAAGCGACTTGTTTGGCTCAAAAGACGTCTAA
AGAATTCAGAAGGATCATCATAATTCGGTCAATATCACCTATAAACTGTA
AAATAAACTTCAATCCACAAACATTATCCAGACTCACTATTAATACTTCA
GAACAGAAAAATGAAGACGAGCCTACAGACCCTGAAAACGAACCTTTAAT
TTTGATCATTCCGTTAGCGTTGACTACGGCTTGTTTATTATGTATACTGG
TGCTAGTTATTATCAAGCTTTTACatgaaaaacaaagacaaaGAAGGACT
GTTTCAACAGCAATGATACCCTCCTCTCCTGGGAAAACGCCGCGTGTTAC
CAAAACGGATAGATCGTGCTCATCTTCAGGTAACCGACAGAGTTGTGAAA
TACTCGTGACAGAATCTAATTTCAGAAATTATGAATCAGTTTGAGAATAA
CGACTTTCATCGCAAGTTTTCGTGTATACATGTTTAAAGGATTTTTGTTA
CAATcccagggggtactagggctGTAAGCCTAAGTACCCCTCCTCCGGGT
TTGCGTGTAAAACCAAAGACTTATAGCCAAAATAACCTTTGGTTATAAGT
CTTTGGTAAAACAGAAGTAGTTTACCAATAGAGGATAAAAGAGGAG Run BLAST on NCBI protein sequence of TCONS_00051177-protein >TCONS_00051177-protein ID=TCONS_00051177-protein|Name=TCONS_00051177-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
IELIGNIGCARPPSLVDRISLAKATCLAQKTSKEFRRIIIIRSISPINCK
INFNPQTLSRLTINTSEQKNEDEPTDPENEPLILIIPLALTTACLLCILV
LVIIKLLHEKQRQRRTVSTAMIPSSPGKTPRVTKTDRSCSSSGNRQSCEI
LVTESNFRNYESV Run BLAST on NCBI transcript from alignment at scaffold_2:427406..428478+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051177 ID=TCONS_00051177|Name=TCONS_00051177|organism=Clytia hemisphaerica|type=transcript|length=1073bp|location=Sequence derived from alignment at scaffold_2:427406..428478+ (Clytia hemisphaerica)
GTATAGAATTGATTGGAAATATCGGCTGTGCAAGACCACCCTGTAAGTTC
ATCACtacaatcaaataaaaaaatgattcaTAATTCCCGATTTAAACCCA
ATTGTTCATGTGAATATCTATTCTTTTTGGAAATTAGAAGACCCTGCCCA
TGGATGTTCATCGTAAGAATGCCGAGTTTTCAACCCTgtgtttctttttt
atgatatcTTATACCCATATACTCactatgaaatattttttgactcattt
gcGTATTTACAGGACCCctcccccacttttttgcaaagttaaaatttttg
gtTGCACATATCCCCCCACTTTCAACTTCATGGTGTGGGCCCTGATTAAA
GATTCAATTCGTCTTTCAATCGTTACTGATTTCTAATAATCATCGTTTTC
TCTTTCTCCGTTTCTTTAGCTTTAGTGGATCGAATCTCCTTAGCCAAAGC
GACTTGTTTGGCTCAAAAGACGTCTAAAGAATTCAGAAGGATCATCATAA
TTCGGTCAATATCACCTATAAACTGTAAAATAAACTTCAATCCACAAACA
TTATCCAGACTCACTATTAATACTTCAGAACAGAAAAATGAAGACGAGCC
TACAGACCCTGAAAACGAACCTTTAATTTTGATCATTCCGTTAGCGTTGA
CTACGGCTTGTTTATTATGTATACTGGTGCTAGTTATTATCAAGCTTTTA
CatgaaaaacaaagacaaaGAAGGACTGTTTCAACAGCAATGATACCCTC
CTCTCCTGGGAAAACGCCGCGTGTTACCAAAACGGATAGATCGTGCTCAT
CTTCAGGTAACCGACAGAGTTGTGAAATACTCGTGACAGAATCTAATTTC
AGAAATTATGAATCAGTTTGAGAATAACGACTTTCATCGCAAGTTTTCGT
GTATACATGTTTAAAGGATTTTTGTTACAATcccagggggtactagggct
GTAAGCCTAAGTACCCCTCCTCCGGGTTTGCGTGTAAAACCAAAGACTTA
TAGCCAAAATAACCTTTGGTTATAAGTCTTTGGTAAAACAGAAGTAGTTT
ACCAATAGAGGATAAAAGAGGAG Coding sequence (CDS) from alignment at scaffold_2:427406..428478+ >TCONS_00051177 ID=TCONS_00051177|Name=TCONS_00051177|organism=Clytia hemisphaerica|type=CDS|length=984bp|location=Sequence derived from alignment at scaffold_2:427406..428478+ (Clytia hemisphaerica)
ATAGAATTGATTGGAAATATCGGCTGTGCAAGACCACCCTCTTTAGTGGA
TCGAATCTCCTTAGCCAAAGCGACTTGTTTGGCTCAAAAGACGTCTAAAG
AATTCAGAAGGATCATCATAATTCGGTCAATATCACCTATAAACTGTAAA
ATAAACTTCAATCCACAAACATTATCCAGACTCACTATTAATACTTCAGA
ACAGAAAAATGAAGACGAGCCTACAGACCCTGAAAACGAACCTTTAATTT
TGATCATTCCGTTAGCGTTGACTACGGCTTGTTTATTATGTATACTGGTG
CTAGTTATTATCAAGCTTTTACatgaaaaacaaagacaaaGAAGGACTGT
TTCAACAGCAATGATACCCTCCTCTCCTGGGAAAACGCCGCGTGTTACCA
AAACGGATAGATCGTGCTCATCTTCAGGTAACCGACAGAGTTGTGAAATA
CTCGTGACAGAATCTAATTTCAGAAATTATGAATCAGTTTGAATAGAATT
GATTGGAAATATCGGCTGTGCAAGACCACCCTCTTTAGTGGATCGAATCT
CCTTAGCCAAAGCGACTTGTTTGGCTCAAAAGACGTCTAAAGAATTCAGA
AGGATCATCATAATTCGGTCAATATCACCTATAAACTGTAAAATAAACTT
CAATCCACAAACATTATCCAGACTCACTATTAATACTTCAGAACAGAAAA
ATGAAGACGAGCCTACAGACCCTGAAAACGAACCTTTAATTTTGATCATT
CCGTTAGCGTTGACTACGGCTTGTTTATTATGTATACTGGTGCTAGTTAT
TATCAAGCTTTTACatgaaaaacaaagacaaaGAAGGACTGTTTCAACAG
CAATGATACCCTCCTCTCCTGGGAAAACGCCGCGTGTTACCAAAACGGAT
AGATCGTGCTCATCTTCAGGTAACCGACAGAGTTGTGAAATACTCGTGAC
AGAATCTAATTTCAGAAATTATGAATCAGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051177-exon-scaffold_2-1491911889:427406..427447 | TCONS_00051177-exon-scaffold_2-1491911889:427406..427447 | Clytia hemisphaerica | exon |
| TCONS_00051177-exon-scaffold_2-1510915933:427406..427447 | TCONS_00051177-exon-scaffold_2-1510915933:427406..427447 | Clytia hemisphaerica | exon |
| TCONS_00051177-exon-scaffold_2-1575043694:427406..427447 | TCONS_00051177-exon-scaffold_2-1575043694:427406..427447 | Clytia hemisphaerica | exon |
| TCONS_00051177-exon-scaffold_2-1491911889:427825..428478 | TCONS_00051177-exon-scaffold_2-1491911889:427825..428478 | Clytia hemisphaerica | exon |
| TCONS_00051177-exon-scaffold_2-1510915933:427825..428478 | TCONS_00051177-exon-scaffold_2-1510915933:427825..428478 | Clytia hemisphaerica | exon |
| TCONS_00051177-exon-scaffold_2-1575043694:427825..428478 | TCONS_00051177-exon-scaffold_2-1575043694:427825..428478 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:427406..428478 + |
Blast
The following BLAST results are available for this feature:
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