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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051166 ID=TCONS_00051166|Name=TCONS_00051166|organism=Clytia hemisphaerica|type=transcript|length=27593bp protein sequence of TCONS_00051166-protein >TCONS_00051166-protein ID=TCONS_00051166-protein|Name=TCONS_00051166-protein|organism=Clytia hemisphaerica|type=polypeptide|length=3952bp MGHDFYCKTVAIVAKNTTNRFSPECINDLLFEYCSLTRSKSEQEDLARRLRun BLAST on NCBI transcript from alignment at scaffold_2:65796..121361+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051166 ID=TCONS_00051166|Name=TCONS_00051166|organism=Clytia hemisphaerica|type=transcript|length=55566bp|location=Sequence derived from alignment at scaffold_2:65796..121361+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_2:65796..121361+ >TCONS_00051166 ID=TCONS_00051166|Name=TCONS_00051166|organism=Clytia hemisphaerica|type=CDS|length=11859bp|location=Sequence derived from alignment at scaffold_2:65796..121361+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00051166 vs. Swiss-Prot (Human)
Match: MDN1 (Midasin OS=Homo sapiens GN=MDN1 PE=1 SV=2) HSP 1 Score: 150.984 bits (380), Expect = 3.674e-35 Identity = 177/673 (26.30%), Postives = 287/673 (42.64%), Query Frame = 1
Query: 4462 DGIVTKAAKEGKWLVIENLSQASSTVLERLNSILESPPVWRTSENNQTIDDSCT----IHSDFRIIATMTPPAGNRGTERLKGANIATNSELSPALYNRFSIIHMATLVNDSSLKMICDVNLKS-TFFKSEAKKLTDLFFKINEESQQYPLTLTQFSRFLDTLYLLCR----------GNASSSEEFSELYTAIELHLLAHFKRSD--------AKH----HIKKIVKEAYPK------FKFNINWFSEDFERSKQSTDYLLDKTLSPSRYFIACVLKTGIDCNFPCLLEGPAATGKSSLVKYLADHMGKTLEHVNNTENTSVSDYIGSILPDGT----FSPGPLIRAMNSGSYFLADEFDLAEPSVLNLLNPLLDGKDSIVVPNTNKLERAHPDFRFFATQN--GITYAGRKELPQSLRSRFTEVHFLPFEENEILAIIEKRMKSTMPLMFEELRPDGKKIAKFYQKLQE-GEGRALFP-KGVTITVREIIKWLRR-KATFPN-------ANIAQIGFELLYSRVKDSGKXXXXXXXXXXXXKVFSKPDVIVDVERKTIINRSHDAIKIPPFKQTETSFWNDFKDTTKELPQ-------FKEHLWN---------VCVATACHEPVLLIGPTS-FKTHLIHTWCKLNLRSDIELVLCNEDTESADLLGRLRP 6282
+G + +A K+G+W++++ ++ A+ +LE L+ +LE +S + +D T H DFR+ A M P A L P + NRF+ +++ L + L+++ LK + K+ + + + + + +ES + T R +L LCR GN S LY L L R+ +H ++K ++K+ P+ + W + + Y+L ++ + I V+ G +P L++G + GK+SL+++LA G +NN E+T + +YIG D + F G LI AM G + + DE +LA VL LN LLD ++V T ++ +AHP F FATQN G+ Y GRK L ++ R+RF E+HF +E+ I+ KR ++P + K+ K LQ ++F K IT+R++ +W R + P ++A G+ LL RV+ + DVI +V K H K+ P Q+ S N K K Q F +W V A EPVLL+G T KT + + L + V C+ E++D LG LRP
Sbjct: 820 EGTLAQAVKKGEWILLDEINLAAPEILECLSGLLEG-----SSGSLVLLDRGDTEPLVRHPDFRLFACMNP------------ATDVGKRNLPPGIRNRFTELYVEELESKEDLQVLIVDYLKGLSVNKNTVQGIINFYTALRKESGTKLVDGTGH-RPHYSLRTLCRALRFAASNPCGNIQRS-----LYEGFCLGFLTQLDRASHPIVQKLICQHIVPGNVKSLLKQPIPEPKGGRLIQVEGYWIAVGDKEPTIDETYILTSSVKLNLRDIVRVVSAG---TYPVLIQGETSVGKTSLIQWLAAATGNHCVRINNHEHTDIQEYIGCYTSDSSGKLVFKEGVLIDAMRKGYWIILDELNLAPTDVLEALNRLLDDNRELLVTETQEVVKAHPRFMLFATQNPPGL-YGGRKVLSRAFRNRFVELHFDELPSSELETILHKR--CSLPPSY------CSKLVKVMLDLQSYRRSSSVFAGKQGFITLRDLFRWAERYRLAEPTEKEYDWLQHLANDGYMLLAGRVRKQ-----------------EEIDVIQEVLEK------HFKKKLCP--QSLFSKENVLKLLGKLSTQISTLECNFGHIVWTEGMRRLAMLVGRALEFGEPVLLVGDTGCGKTTICQVFAALA-NQKLYSVSCHLHMETSDFLGGLRP 1431 HSP 2 Score: 100.138 bits (248), Expect = 7.217e-20 Identity = 80/287 (27.87%), Postives = 135/287 (47.04%), Query Frame = 2
Query: 2780 TVEMTLSRISQSIDNPVNLLLEGPTGIGKTAIVTEAAKLSGKSLIRFNMXXXXXXXXXFGSAFPNEINGKTEVTFQKGDFTLAYSEGYWLLLDEFNLAPDNVLSCIKSALDSDVLTIPTDSAERGKTDEDQKYIQYQ-RHPDFRLFCTQNPNSGLYKGKRETHSVSLLSRFCPLVIQKPTIEELKEIISTMISNKGFAKKKSFELARMLTGTHLDIENYFSNSTEEKSAPYNEITIRDMIRWVQLISLKENFE-ENMASLAWSVYGSRLRHPVNKSEVREIIKKNCG 3634
T M R+ ++ +LLEG G+GKT++V AK SG +L+R N+S T I+ +FG+ P E E ++ G A G+W++LDE NLA +VL + + D RG+ + + +Q +H ++F QNP G R+ S L+RF + + T+ +++ I ST+ A +K+ + +D E +K P+ E +RD+ RW QL+ + ++ + + VYG R+R +K +V + K G
Sbjct: 1731 TTAMNAQRLLRATKLKKPILLEGSPGVGKTSLVGALAKASGNTLVRINLSEQTDITDLFGADLPVEGGKGGEFAWRDGPLLAALKAGHWVVLDELNLASQSVLEGLNACFD-----------HRGEIYVPELGMSFQVQHEKTKIFGCQNPFR--QGGGRKGLPRSFLNRFTQVFVDPLTVIDMEFIASTLFP----AIEKNIVKKMVAFNNQIDHEVTVEKKWGQKGGPW-EFNLRDLFRWCQLMLVDQSPGCYDPGQHVFLVYGERMRTEEDKKKVIAVFKDVFG 1999 HSP 3 Score: 94.7449 bits (234), Expect = 2.932e-18 Identity = 63/166 (37.95%), Postives = 87/166 (52.41%), Query Frame = 1
Query: 7876 NFKNIILSK-STYRNICRVFAAAQCEFRLLLNGPPGVGKTKIIEELSVVLGYKCIRINFSANTTLEDLIGSFIPKVIDGK-QNFIFEEGPLLKGLRESASSWILLDEINLAHPSVLQKLIPIFAGHTSFKVEATGET--VDLNKVRLFATKNPESIGGGRNRLPDS 8361
N + LS +T N R+ A + + +LL G PGVGKT ++ L+ G +RIN S T + DL G+ +P V GK F + +GPLL L+ A W++LDE+NLA SVL+ L F V G + V K ++F +NP GGGR LP S
Sbjct: 1721 NIADYALSAGTTAMNAQRLLRATKLKKPILLEGSPGVGKTSLVGALAKASGNTLVRINLSEQTDITDLFGADLP-VEGGKGGEFAWRDGPLLAALK--AGHWVVLDELNLASQSVLEGLNACFDHRGEIYVPELGMSFQVQHEKTKIFGCQNPFRQGGGRKGLPRS 1883 HSP 4 Score: 93.2041 bits (230), Expect = 8.916e-18 Identity = 81/295 (27.46%), Postives = 140/295 (47.46%), Query Frame = 2
Query: 2768 VKTKTVEMTLSRISQSID-NPVNLLLEGPTGIGKTAIVTEAAKLSGKSLIRFNMXXXXXXXXXFGSAFPNEINGKTEVTFQKGDFTLAYSEGYWLLLDEFNLAPDNVLSCIKSALDSDVLTIPTDSAERGKTDEDQKYIQYQRHPDFRLFCTQNPNSGLYKGKRETHSVSLLSRFCPLVIQKPTIEELKEIISTMIS-NKGFAKKKSFELARMLTGTHLDIENYFSNSTEEKSAPYNEITIRDMIRWVQLISLKENFE------ENMASLAWSVYGSRLRHPVNKSEVREIIKKN 3628
+ T +V++ L I + + +L++G T +GKT+++ A +G +R N T I G + ++ +GK + F++G A +GYW++LDE NLAP +VL + LD + + T++ E K HP F LF TQNP GLY G R+ S + +RF L + EL+ I+ S + K L LD+++Y S+ + IT+RD+ RW + L E E +++A+ + + R+R ++E+++K+
Sbjct: 1057 ILTSSVKLNLRDIVRVVSAGTYPVLIQGETSVGKTSLIQWLAAATGNHCVRINNHEHTDIQEYIG-CYTSDSSGK--LVFKEGVLIDAMRKGYWIILDELNLAPTDVLEALNRLLDDNRELLVTETQEVVKA-----------HPRFMLFATQNP-PGLY-GGRKVLSRAFRNRFVELHFDELPSSELETILHKRCSLPPSYCSK--------LVKVMLDLQSY-RRSSSVFAGKQGFITLRDLFRWAERYRLAEPTEKEYDWLQHLANDGYMLLAGRVRKQEEIDVIQEVLEKH 1326 HSP 5 Score: 91.6633 bits (226), Expect = 2.689e-17 Identity = 57/149 (38.26%), Postives = 76/149 (51.01%), Query Frame = 1
Query: 5218 PCLLEGPAATGKSSLVKYLADHMGKTLEHVNNTENTSVSDYIGSILP-----DGTFS--PGPLIRAMNSGSYFLADEFDLAEPSVLNLLNPLLDGKDSIVVPNTN-KLERAHPDFRFFATQNGITY-AGRKELPQSLRSRFTEVHFLPF 5637
P LLEG GK+SLV LA G TL +N +E T ++D G+ LP G F+ GPL+ A+ +G + + DE +LA SVL LN D + I VP + H + F QN GRK LP+S +RFT+V P
Sbjct: 1748 PILLEGSPGVGKTSLVGALAKASGNTLVRINLSEQTDITDLFGADLPVEGGKGGEFAWRDGPLLAALKAGHWVVLDELNLASQSVLEGLNACFDHRGEIYVPELGMSFQVQHEKTKIFGCQNPFRQGGGRKGLPRSFLNRFTQVFVDPL 1896 The following BLAST results are available for this feature:
BLAST of TCONS_00051166 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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