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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051165 ID=TCONS_00051165|Name=TCONS_00051165|organism=Clytia hemisphaerica|type=transcript|length=385bp
TCAGCAGGTTGTTGCTGGCTTGTTTGATGATCTTCGTATTAGTCTGAAAA
CCTTGCTGCTAATACTGCGtatatttcttcacatatattttATATATCTC
TTTCAAACAACAAAGATTTAACAATTGAAGATCTTAcataacaaaaagga
aaacctATCGAATAGAAGACAAAGTTTAAAGCCTCTAGCTGGGTGCCGCC
TTGCGCGGCTTGAGgTCGACAAACCCAAAATGACGGGGACGTCAaatgag
aagaagaaaaaagataaagagAAAATATCTAAGCCAGTTCTTACATACGA
TGGCATACATATGATCATACAtgaaatttgtgaactagaactgtctaggg
tcaatggcccagaaggctcaagtgacactATGCgc Run BLAST on NCBI transcript from alignment at scaffold_2:65796..71425+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051165 ID=TCONS_00051165|Name=TCONS_00051165|organism=Clytia hemisphaerica|type=transcript|length=5630bp|location=Sequence derived from alignment at scaffold_2:65796..71425+ (Clytia hemisphaerica)
TCAGCAGGTTGTTGCTGGCTTGTTTGATGATCTTCGTATTAGTCTGAAAA
CCTTGCTGCTAATACTGCGtatatttcttcacatatattttATATATCTC
TTTCAAACAACAAAGGTAAGTGCCACAGTCACAGGACGtcaatttccttt
tttatttttgtagaaagctttgctgaaaattttttgagaaacgctttctt
acacccctgtgtcacagacccactaggaaCAAGCCCCCCTTAGAAAATTT
GTCCAATATTTCGTCcgcggtgggaaaataccctggaatttcagcccaac
tgggaaattgactttgatttcatcactactaaatgtttgaaaattgcact
ccaaaatcatccccactggactttttaaccttggaacaatagaatttcta
cccccattgggatttcattTATTGGgaatttttatcctcactggaaaaaa
gttccaccgggctgtgagacaggggggttttcttgtaaatttaAGTGTAA
CTGTAAGTGATTTTCAAGTACGTTTATGTTCATGGTGTGACATGGGTAGA
TCTGGAGGAAGTATGGCTCAAAATGCGTTGATTGTTAAATCTtaaacaaa
aatgtcatttttattttgaagtttattaATTACTAAAATGTCATGGCGAT
GAATCATTTCTTCATAATATTTATTTAGATTTAACAATTGAAGATCTTAc
ataacaaaaaggaaaacctATCGAATAGAAGACAAAGTTTAAAGCCTCTA
GCTGGGTGCCGCCTTGCGCGGCTTGAGGTACGTAGTAGACGTAGTATATT
TAGGGGTTGTTTAGAATAATTTCCTATCTTATTATTCAATTAGGCTGTTG
GCATCGCATTAACGGATTTGTGCTCCTCATAGAGAATGCTTAATAAGCGA
TTTCCTTTGTCCAAAGATTTTCTGTTAGCCGATATACTAAGGaaattttt
agctggcgagggCTTGCAAAAGTAACATTttgtaatgtttaaattttcaa
tgaagcacaaatttgacccacgcaaaaaaaaattgacccactCAAAAGAA
TTGGACCCACGCTAAAAAATTGGACACCCACGCAAAAAGTTTCGAACCCC
ACAAAAATTATTTAGACCAgcacaaaaaatgttttgacccacgcacccga
GCACCCACGCAAAAAGAAATTGTACCCACACACACACACTCACCCACATA
ACCACTCAAACCACGCACCCACTTAAACATCTACGTAAGAAACAAATCAA
TCCTTCTTGATAAAGGGTGAAATACCTTTCGCTTCGCTAATTATTTTTAC
GAagcataaacataaacatactTTCACTCTATAGGCCTGTTCACACTGAA
TTTCAATATGATATGATTTTCCGATAAACGTTCGATCTAACCCTATTcgg
actagggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNaaatcttttttttacccccggag
ggggggggggggggtacttgatttatgagatgacgggtatgtccaagtca
aagtttgaaaatctgaaaatcggcccTTAGAGGAACTGAAGTTTGACGCT
TTTGCGACCTTTTGAGTATACTATGCTTTGAGAgactatttttccaattt
tctccattttttgacgtttttgccacACTTAGAGAAACTATTTACtagta
aaaatttcaaaaatttatgaccctttaagggagttgatttttgattttcg
taattttggaactCTTACAGAGACCCTGgagcaacatttttcaaaaaatg
tgtttatttttccaggagagggaaTTTCGGAGTAAAATTCAGGAACCAGC
TATTTTATcaagaactttaaaaaaatattgaaagaagtttgaaatatctg
ttctgaaatCCAGgaataaattagaaaaaaatatcacttgtTTTTCCAAC
AGCAGACCTTAGATGTCCAAAGAATACAGGaccaaatataaacaaaagCA
GTTACTTTTTTTCAGGCGGATCTCGAGGgctcaataaaaaaaaactgcaC
ATATTAAATTTTCCAGTAGTCatgatttaagggctctgaccatagtgaat
ttttcataattgccgtgtttaaaatgtgttttctgactgatgtaaccaac
aaaactatggcatgatatacattttctgttagacaaactattcttgaatc
tgaaaattcaaaaattcattgcatttaaaaattttgacgaagaagaaaat
gaagacttttgcgaggaagagtatttcaactttgaagagcttagtttcgg
cgaagaaaaaacattttgaaaattttttcgcaNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgg
tttttcatcaatttttcatctggattttgcttaaaaaaacagtcataact
tttgacacatcgttttagaaaaattttccgcaaaatttgaaatagttcAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
gaaagcaatttataaaggcaattctttgttaaaagtgttaaggaacctga
aatataacttttatgttcaaataccaaaatcaatttttggactatggtca
aaGTCCTTAAACTAAGAGCAGATGCAAATTTCCAGGAGtctacatttttt
caaaaacagatAAGTTTATCCAGGAAGTCTGTCAAGAAAAAAacgaggcc
cccagcggttttcgTGTTTGCGTGATTTATGGCGTTTTTCAAgctcgtga
ttgcgtgattttAAGATGTTAAAAAAGTACGTGATCGCGTGATCGGAGGA
ACCAAAGTGATTAACGTGATCATGGTAGAAATTTAACTCGTGATAACgcg
atttggaattttttttttgcgtgattgcgtgatttgaaaggtgattGGGG
CCTCAAAGAACAAATACAGTTTTCTAGGGAAAGTTTCCATTCAAAACAAA
TAATATAATATTTCTAGCCGTTTGGCTACTCTttgacccttatggctcgc
acataccccggcacccattttgcctaagtacaaCCCCCCTCCCACGGGAT
TTTACCCCTTTAGCATTCAGACACACTTTTTTGTCAGGGGTACAGGGTCA
GAATTCACCGGAAATTTTGGCGTCGAAATAGGTTCCGAACGGTGGAAAAT
CCAGCCGCCGGAATAGtccaccctcgcgagccagggccgataaacgattc
tacgacttaaagaggccagtaccgtataattggaggaatcatcaatagcg
taagggggttagataagccatggggtCGAGGGTGGGAATAGTCATCCAGC
ACGCGGAAAATTGGCTGTCGGAAAAATTTATCAGGTCCGCAGAAATTGAA
GtcgagttttttttttcgagttattttgtTGCATCTTTTTTCGGCAAATT
CTGACTCTGAGTCTGACCCCCCcccttgtctgtacacaaacccaatatct
acggctaatttcaaaattcattgccgtagaggaactacgctacgataatc
gtgagatacactctggtacagagtagagCCCCCCTGATACTTTTCCcctt
cttgattttgttttcttgtAATCTTAGACGCGACACAGCCCTCTTAatcg
attttcttttttctgtacattttaaacaaacaaatatttgaGAGCTCTTT
TGTTTCGAGggtcaaatcaaatcaaaaagctGGGTTATAGCGTTagcaga
aaaacaattttcCAGGCCTTTCGATTATCGACCGCTGGAAGGGGAATATC
TCTATTTTTGCCGTTCACACTAGCGAAGAGATAATCATATTTTGTTGCTA
ATTATATGAAGACAGCAAATCAAGCAGTGTGAACAAGCCCTTTAAAAGGG
TGGTATTTTAGTGCAAGTTATGTCTAGTTaagttttatcattattttagg
TCGACAAACCCAAAATGACGGGGACGTCAaatgagaagaagaaaaaagat
aaagagAAAATATCTAAGCCAGGTAAGATTTTTGGTAATATTCAGTAACT
AAATGTTAGTTTTTAACTTGAATCTCTAACGCACTGTACGTAGAAATGGA
AAATCATCAACATCAAGGTAGAGTTAATTGAGTTAAGACATCTGGACGTA
CATGGTAAAACTAGATGATTTCTATTGTCGCAAACGCGACAAGAGTCAGA
CTCAGAGATTTTTCGAGCGTATCTCATGTAATTATTATGGCATGTCCAAA
AATACCATAAGTTTGGTTAAAAACTAGGGGCCTTCGGAATGGTCATTTAT
ACGTCAAAAGAAGCCTATTAGTATTAAGATGTATTTCAGAAATCGATGtt
gataaaattaattttgtgtCCTTatttgccccgcaggggcttttgctGCT
TTacgtagcggacttgctcgccagaaaaatattcatattcTTGATGTTTT
ttccgattctgagcgggccgccgCGGTTAAAAATTATTTGCACGCACCTA
TCTATTTTGTTGCGACTTGTATTGATTTTTAGTTCTTACATACGATGGCA
TACATATGATCATACAtgaaatttgtgaactagaactgtctagggtcaat
ggcccagaaggctcaagtgacactATGCgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051165-exon-scaffold_2-1491911889:65796..65910 | TCONS_00051165-exon-scaffold_2-1491911889:65796..65910 | Clytia hemisphaerica | exon |
| TCONS_00051165-exon-scaffold_2-1510915933:65796..65910 | TCONS_00051165-exon-scaffold_2-1510915933:65796..65910 | Clytia hemisphaerica | exon |
| TCONS_00051165-exon-scaffold_2-1575043694:65796..65910 | TCONS_00051165-exon-scaffold_2-1575043694:65796..65910 | Clytia hemisphaerica | exon |
| TCONS_00051165-exon-scaffold_2-1491911889:66474..66572 | TCONS_00051165-exon-scaffold_2-1491911889:66474..66572 | Clytia hemisphaerica | exon |
| TCONS_00051165-exon-scaffold_2-1510915933:66474..66572 | TCONS_00051165-exon-scaffold_2-1510915933:66474..66572 | Clytia hemisphaerica | exon |
| TCONS_00051165-exon-scaffold_2-1575043694:66474..66572 | TCONS_00051165-exon-scaffold_2-1575043694:66474..66572 | Clytia hemisphaerica | exon |
| TCONS_00051165-exon-scaffold_2-1491911889:70745..70817 | TCONS_00051165-exon-scaffold_2-1491911889:70745..70817 | Clytia hemisphaerica | exon |
| TCONS_00051165-exon-scaffold_2-1510915933:70745..70817 | TCONS_00051165-exon-scaffold_2-1510915933:70745..70817 | Clytia hemisphaerica | exon |
| TCONS_00051165-exon-scaffold_2-1575043694:70745..70817 | TCONS_00051165-exon-scaffold_2-1575043694:70745..70817 | Clytia hemisphaerica | exon |
| TCONS_00051165-exon-scaffold_2-1491911889:71328..71425 | TCONS_00051165-exon-scaffold_2-1491911889:71328..71425 | Clytia hemisphaerica | exon |
| TCONS_00051165-exon-scaffold_2-1510915933:71328..71425 | TCONS_00051165-exon-scaffold_2-1510915933:71328..71425 | Clytia hemisphaerica | exon |
| TCONS_00051165-exon-scaffold_2-1575043694:71328..71425 | TCONS_00051165-exon-scaffold_2-1575043694:71328..71425 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:65796..71425 + |
Blast
The following BLAST results are available for this feature:
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