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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051136 ID=TCONS_00051136|Name=TCONS_00051136|organism=Clytia hemisphaerica|type=transcript|length=1660bpRun BLAST on NCBI protein sequence of TCONS_00051136-protein >TCONS_00051136-protein ID=TCONS_00051136-protein|Name=TCONS_00051136-protein|organism=Clytia hemisphaerica|type=polypeptide|length=382bp MTANSFKRNRLIVLFLLGFVFALLFVKVYQNTKDKYDYIRQHHPQTVVKIRun BLAST on NCBI transcript from alignment at scaffold_199:3607..54239- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051136 ID=TCONS_00051136|Name=TCONS_00051136|organism=Clytia hemisphaerica|type=transcript|length=50633bp|location=Sequence derived from alignment at scaffold_199:3607..54239- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_199:3607..54239- >TCONS_00051136 ID=TCONS_00051136|Name=TCONS_00051136|organism=Clytia hemisphaerica|type=CDS|length=8043bp|location=Sequence derived from alignment at scaffold_199:3607..54239- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00051136 vs. Swiss-Prot (Human)
Match: CHSTB (Carbohydrate sulfotransferase 11 OS=Homo sapiens GN=CHST11 PE=1 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 2.945e-34 Identity = 73/230 (31.74%), Postives = 123/230 (53.48%), Query Frame = 2
Query: 599 YCSIPKVACTTWKKIFQVFYGNYRTIQDIKVSKDDVH---ELKY--QYHMGLNIYKANLKTEQYFNFIIVRHPLERLVSGYRNKIEKPFNANFQRRFGSLMLRFNRNNLTEQEYRAGKGVTFHEYINYIIKTPMNK---IDEHFGGMQELCHICNTKYDFIADMSTLYDDSDIILKQIGWYDRLQFPKKSKDNYVKGAVDIAPEYINRLSDKILNKVYEKFRDDFEAFGY 1264
YC +PKVACT WK++ V G + +++ ++ H LK QY +I + N + + Y F+ VR P ERLVS YRNK + +N +F +R+G+ +++ R N T++ R G V F E++ Y+I + +EH+ + LCH C+ YD + TL +DS+ +L+ G L+FP +K + ++ E+ +S + ++YE ++ DF F Y
Sbjct: 120 YCYVPKVACTNWKRLMMVLTGRGKYSDPMEIPANEAHVSANLKTLNQY----SIPEINHRLKSYMKFLFVREPFERLVSAYRNKFTQKYNISFHKRYGTKIIKRQRKNATQEALRKGDDVKFEEFVAYLIDPHTQREEPFNEHWQTVYSLCHPCHIHYDLVGKYETLEEDSNYVLQLAGVGSYLKFPTYAKST--RTTDEMTTEFFQNISSEHQTQLYEVYKLDFLMFNY 343 The following BLAST results are available for this feature:
BLAST of TCONS_00051136 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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