TCONS_00051132 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051132
Unique NameTCONS_00051132
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length334

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051132 ID=TCONS_00051132|Name=TCONS_00051132|organism=Clytia hemisphaerica|type=transcript|length=334bp
TATGTTCGTATGACGTTACCAAAGTGTTGGTATGGCGTTACCAAAGTGTT
GGTATGGCGTTACCAAGGTGTCGGTATGGCGTTACCAAAGTGTTTGTATG
ACGTTACCAAGGTGTCGGTATGGCGTTACCAAAGTGTTGGTATAATGCAA
CAAAATTGGCATTGATATAAAGTTTCCAAGGACCTGGGATGGTGTATCAA
TATTCTGATTATTAGCAGATCCATCAAGTATTTATCTTGATGGATACCCA
GTAGTATGTTCATACCAGTACCGGGAAGCATCAAGGACCAAAtgaagaat
aggatcaaggatcaaatgaagaataggatcaagg
Run BLAST on NCBI

transcript from alignment at scaffold_198:8986..9750+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051132 ID=TCONS_00051132|Name=TCONS_00051132|organism=Clytia hemisphaerica|type=transcript|length=765bp|location=Sequence derived from alignment at scaffold_198:8986..9750+ (Clytia hemisphaerica)
TATGTTCGTATGACGTTACCAAAGTGTTGGTATGGCGTTACCAAAGTGTT
GGTATGGCGTTACCAAGGTGTCGGTATGGCGTTACCAAAGTGTTTGTATG
ACGTTACCAAGGTGTCGGTATGGCGTTACCAAAGTGTTGGTATAATGCAA
CAAAATTGGCATTGATATAAAGTTTCCAAGGACCTGGGATGGTGTATCAA
TATTCTGATTATTAGCAGATCCATCAAGTATTTATCTTGATGGTAAGATT
CATTTCTCAGAAACTTgattctaaaaatgtttttgaaaccCAAGCTATAT
ATACAACTACATTCATTCAGATCAGGATATGCATTTTGTCCTTATTGGAA
CTCATCAGCACTGTGTTTTGCACCCTGACTGGCCAAATCGATTTAGCCAG
CATCTCTAAACacaaaaatcacttgtggttcaaaCTATATATACTctcaa
tttgcatcaaaattcTTATCCCTGTAAACAGTGCATTTGGCCTGTCGgca
aaaacaattcaataatACACACCCCTAGCTAAGGTTGCAAATGTAATCCT
CGATGATCATGTACAGATGAATTGTTTGAGAGAATATAGTTGTCCTAGAG
ACTAGTGACTAGATATAACGCCCGGTCACGAATCTCTTATTGTGTTTTCA
TAGTTCATTTCCATCTTTTTTAGGATACCCAGTAGTATGTTCATACCAGT
ACCGGGAAGCATCAAGGACCAAAtgaagaataggatcaaggatcaaatga
agaataggatcaagg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032419XLOC_032419Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051132-exon-scaffold_198-1491911889:8986..9227TCONS_00051132-exon-scaffold_198-1491911889:8986..9227Clytia hemisphaericaexon
TCONS_00051132-exon-scaffold_198-1510915933:8986..9227TCONS_00051132-exon-scaffold_198-1510915933:8986..9227Clytia hemisphaericaexon
TCONS_00051132-exon-scaffold_198-1575043694:8986..9227TCONS_00051132-exon-scaffold_198-1575043694:8986..9227Clytia hemisphaericaexon
TCONS_00051132-exon-scaffold_198-1491911889:9659..9750TCONS_00051132-exon-scaffold_198-1491911889:9659..9750Clytia hemisphaericaexon
TCONS_00051132-exon-scaffold_198-1510915933:9659..9750TCONS_00051132-exon-scaffold_198-1510915933:9659..9750Clytia hemisphaericaexon
TCONS_00051132-exon-scaffold_198-1575043694:9659..9750TCONS_00051132-exon-scaffold_198-1575043694:9659..9750Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_198supercontigscaffold_198:8986..9750 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.553533	0	0	0	0	0	0	0.239167	0	0	0	0	0	0	0	0.21306	0.21838	0	0.315711	0	0	0.325419	0	22.7538	15.1935	0	0	0.315015	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051132 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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