TCONS_00051130 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051130
Unique NameTCONS_00051130
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length635

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051130 ID=TCONS_00051130|Name=TCONS_00051130|organism=Clytia hemisphaerica|type=transcript|length=635bp
CTGGAATAGATGACCattctttctttttatcttcAACCCACTTGGCAAAT
TCTACATAATTTAAATATCTTTGGGGTACTCTTTTTATGTCAGGAAAGTT
TTCATGAGCTCTTGGTCCAGTGTAAGTGAaaggtgaaatttccaaaatat
ctgatatgatttctttttcatcttctaaTGAGTCTCTCGTGGTATGATGA
GAGGAACCATGCTCAACAGATATCTCTTGATCAAAACTCTCCACTATATC
TTTTATACCGTTTGTTGCCTTGCAAATCTTTTCAATAGACTTCAGGCTTT
TATTTGCCCCCATGCGTTTTACTATTTTTTTACTCATTCGATTGCAAATT
TCTTGTGCAAGATCATCCTCAATATTGTTTCCTTTCCCCCCTCGCCAGTT
TAAGAAGAAGCCCCACTTAAATTCTTGAGATAGCCTTGGGGTTAGTGTGC
ACTCTATTTGTGCAATAGAGGTGAACATTTCAACAGCATATTTACTACGA
CTATTAAGAGCTTTGAAGACAAcaagtaaaattttttgatttatgagGTT
ACGATCACCATCAGCTTCAGCAGCAGTGTCCTTCATCTGTAAAAGCAAAA
ctgttaaaaaaataatcattaatccataattttgt
Run BLAST on NCBI

protein sequence of TCONS_00051130-protein

>TCONS_00051130-protein ID=TCONS_00051130-protein|Name=TCONS_00051130-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
QNYGLMIIFLTVLLLQMKDTAAEADGDRNLINQKILLVVFKALNSRSKYA
VEMFTSIAQIECTLTPRLSQEFKWGFFLNWRGGKGNNIEDDLAQEICNRM
SKKIVKRMGANKSLKSIEKICKATNGIKDIVESFDQEISVEHGSSHHTTR
DSLEDEKEIISDILEISPFTYTGPRAHENFPDIKRVPQRYLNYVEFAKWV
EDKKKEWSSIP
Run BLAST on NCBI

transcript from alignment at scaffold_197:85934..86568

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051130 ID=TCONS_00051130|Name=TCONS_00051130|organism=Clytia hemisphaerica|type=transcript|length=635bp|location=Sequence derived from alignment at scaffold_197:85934..86568 (Clytia hemisphaerica)
acaaaattatggattaatgattatttttttaacagTTTTGCTTTTACAGA
TGAAGGACACTGCTGCTGAAGCTGATGGTGATCGTAACctcataaatcaa
aaaattttacttgTTGTCTTCAAAGCTCTTAATAGTCGTAGTAAATATGC
TGTTGAAATGTTCACCTCTATTGCACAAATAGAGTGCACACTAACCCCAA
GGCTATCTCAAGAATTTAAGTGGGGCTTCTTCTTAAACTGGCGAGGGGGG
AAAGGAAACAATATTGAGGATGATCTTGCACAAGAAATTTGCAATCGAAT
GAGTAAAAAAATAGTAAAACGCATGGGGGCAAATAAAAGCCTGAAGTCTA
TTGAAAAGATTTGCAAGGCAACAAACGGTATAAAAGATATAGTGGAGAGT
TTTGATCAAGAGATATCTGTTGAGCATGGTTCCTCTCATCATACCACGAG
AGACTCAttagaagatgaaaaagaaatcatatcagatattttggaaattt
caccttTCACTTACACTGGACCAAGAGCTCATGAAAACTTTCCTGACATA
AAAAGAGTACCCCAAAGATATTTAAATTATGTAGAATTTGCCAAGTGGGT
TgaagataaaaagaaagaatGGTCATCTATTCCAG

Coding sequence (CDS) from alignment at scaffold_197:85934..86568

>TCONS_00051130 ID=TCONS_00051130|Name=TCONS_00051130|organism=Clytia hemisphaerica|type=CDS|length=633bp|location=Sequence derived from alignment at scaffold_197:85934..86568 (Clytia hemisphaerica)
caaaattatggattaatgattatttttttaacagTTTTGCTTTTACAGAT
GAAGGACACTGCTGCTGAAGCTGATGGTGATCGTAACctcataaatcaaa
aaattttacttgTTGTCTTCAAAGCTCTTAATAGTCGTAGTAAATATGCT
GTTGAAATGTTCACCTCTATTGCACAAATAGAGTGCACACTAACCCCAAG
GCTATCTCAAGAATTTAAGTGGGGCTTCTTCTTAAACTGGCGAGGGGGGA
AAGGAAACAATATTGAGGATGATCTTGCACAAGAAATTTGCAATCGAATG
AGTAAAAAAATAGTAAAACGCATGGGGGCAAATAAAAGCCTGAAGTCTAT
TGAAAAGATTTGCAAGGCAACAAACGGTATAAAAGATATAGTGGAGAGTT
TTGATCAAGAGATATCTGTTGAGCATGGTTCCTCTCATCATACCACGAGA
GACTCAttagaagatgaaaaagaaatcatatcagatattttggaaatttc
accttTCACTTACACTGGACCAAGAGCTCATGAAAACTTTCCTGACATAA
AAAGAGTACCCCAAAGATATTTAAATTATGTAGAATTTGCCAAGTGGGTT
gaagataaaaagaaagaatGGTCATCTATTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032417XLOC_032417Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051130-proteinTCONS_00051130-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051130-exon-scaffold_197-1491911889:85934..86568TCONS_00051130-exon-scaffold_197-1491911889:85934..86568Clytia hemisphaericaexon
TCONS_00051130-exon-scaffold_197-1510915933:85934..86568TCONS_00051130-exon-scaffold_197-1510915933:85934..86568Clytia hemisphaericaexon
TCONS_00051130-exon-scaffold_197-1575043694:85934..86568TCONS_00051130-exon-scaffold_197-1575043694:85934..86568Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_197supercontigscaffold_197:85934..86568 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0832811	0	0	0	1.79695	0.976231	1.60606	1.90453	1.12287	1.13007	1.0125	1.46783	1.99395	1.72562	0.189159	0.0507491	0.125038	0.12816	0	0	0.161042	0.117826	0.190977	0	3.39778	5.02746	0	0.121872	0.0924355	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051130 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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