TCONS_00051091 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051091
Unique NameTCONS_00051091
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length376

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051091 ID=TCONS_00051091|Name=TCONS_00051091|organism=Clytia hemisphaerica|type=transcript|length=376bp
AGTCTATTTGCATAATTCTAAAATTTAACCATTTAATTGGATTTGGAAGC
CGGCAACAATGAGGGCACCTTGGCAGTCGTGATACCCCCACCTTGAGTGG
CTAATACGCATGAATGCGGGGGACCGGTGGCCTAATATTTCATTTACTAT
GTGTGTATCTATTTATATCATAATCAATCAACTTtatatttgtttttcaa
tttttgtatttatcaaaaatgcTCTTTTAGGTTTATTTATCAACTACTgt
ataagttggtctaatgtcgacatccctcgtgTAATTCCAACACCCTAGAG
ATAAAATCAAAAGGAAGGTCAGAattactgattgaaaaaggatggTTTCC
TCTCTTACCGCTTTAATAGATATCAG
Run BLAST on NCBI

transcript from alignment at scaffold_193:176575..176950

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051091 ID=TCONS_00051091|Name=TCONS_00051091|organism=Clytia hemisphaerica|type=transcript|length=376bp|location=Sequence derived from alignment at scaffold_193:176575..176950 (Clytia hemisphaerica)
CTGATATCTATTAAAGCGGTAAGAGAGGAAAccatcctttttcaatcagt
aatTCTGACCTTCCTTTTGATTTTATCTCTAGGGTGTTGGAATTAcacga
gggatgtcgacattagaccaacttatacAGTAGTTGATAAATAAACCTAA
AAGAgcatttttgataaatacaaaaattgaaaaacaaatataAAGTTGAT
TGATTATGATATAAATAGATACACACATAGTAAATGAAATATTAGGCCAC
CGGTCCCCCGCATTCATGCGTATTAGCCACTCAAGGTGGGGGTATCACGA
CTGCCAAGGTGCCCTCATTGTTGCCGGCTTCCAAATCCAATTAAATGGTT
AAATTTTAGAATTATGCAAATAGACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032384XLOC_032384Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051091-exon-scaffold_193-1491911889:176575..176950TCONS_00051091-exon-scaffold_193-1491911889:176575..176950Clytia hemisphaericaexon
TCONS_00051091-exon-scaffold_193-1510915933:176575..176950TCONS_00051091-exon-scaffold_193-1510915933:176575..176950Clytia hemisphaericaexon
TCONS_00051091-exon-scaffold_193-1575043694:176575..176950TCONS_00051091-exon-scaffold_193-1575043694:176575..176950Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_193supercontigscaffold_193:176575..176950 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.207164	0.240537	0	0.572979	0.226388	0.273127	0.511397	1.25314	0	1.29139	0.990394	0.706441	0.293458	0.603157	1.29456	0.637916	1.47115	1.12915	2.59946	4.10801	4.20786	1.70507	1.99306	0	0	2.913	2.48706	0.707381	0.720709
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051091 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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