TCONS_00051082 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051082
Unique NameTCONS_00051082
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length327

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051082 ID=TCONS_00051082|Name=TCONS_00051082|organism=Clytia hemisphaerica|type=transcript|length=327bp
CTCTGAATatatacttaatattttttctaattttgttccAAATAAAACTA
TCACCATCAGAGATAAAGATGCGTTATGGATGACTCCTGAGATAAAGCAG
CTGCTTTTGGATAAGGCTAAGATATATCGTCGTTGGAGAAAATGGGGAAA
TCCTTTAGATGGTCAGGCACTTGATGACATGGTTGACAGGTGCAGATTGG
CCATCAAGACTGCCAAGGATAACTATTTTTCTCGTCTTGGCAACTCTTTA
AATGATCCAAACATaggaagtaagaaatactggtctactCTGAAGCAGTT
TCTGAACGTACGTAAAACCCCGAAAAT
Run BLAST on NCBI

protein sequence of TCONS_00051082-protein

>TCONS_00051082-protein ID=TCONS_00051082-protein|Name=TCONS_00051082-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
SEYILNIFSNFVPNKTITIRDKDALWMTPEIKQLLLDKAKIYRRWRKWGN
PLDGQALDDMVDRCRLAIKTAKDNYFSRLGNSLNDPNIGSKKYWSTLKQF
LNVRKTPK
Run BLAST on NCBI

transcript from alignment at scaffold_193:10042..10368

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051082 ID=TCONS_00051082|Name=TCONS_00051082|organism=Clytia hemisphaerica|type=transcript|length=327bp|location=Sequence derived from alignment at scaffold_193:10042..10368 (Clytia hemisphaerica)
ATTTTCGGGGTTTTACGTACGTTCAGAAACTGCTTCAGagtagaccagta
tttcttacttcctATGTTTGGATCATTTAAAGAGTTGCCAAGACGAGAAA
AATAGTTATCCTTGGCAGTCTTGATGGCCAATCTGCACCTGTCAACCATG
TCATCAAGTGCCTGACCATCTAAAGGATTTCCCCATTTTCTCCAACGACG
ATATATCTTAGCCTTATCCAAAAGCAGCTGCTTTATCTCAGGAGTCATCC
ATAACGCATCTTTATCTCTGATGGTGATAGTTTTATTTggaacaaaatta
gaaaaaatattaagtatatATTCAGAG

Coding sequence (CDS) from alignment at scaffold_193:10042..10368

>TCONS_00051082 ID=TCONS_00051082|Name=TCONS_00051082|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at scaffold_193:10042..10368 (Clytia hemisphaerica)
TTTCGGGGTTTTACGTACGTTCAGAAACTGCTTCAGagtagaccagtatt
tcttacttcctATGTTTGGATCATTTAAAGAGTTGCCAAGACGAGAAAAA
TAGTTATCCTTGGCAGTCTTGATGGCCAATCTGCACCTGTCAACCATGTC
ATCAAGTGCCTGACCATCTAAAGGATTTCCCCATTTTCTCCAACGACGAT
ATATCTTAGCCTTATCCAAAAGCAGCTGCTTTATCTCAGGAGTCATCCAT
AACGCATCTTTATCTCTGATGGTGATAGTTTTATTTggaacaaaattaga
aaaaatattaagtatatATTCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032375XLOC_032375Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051082-proteinTCONS_00051082-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051082-exon-scaffold_193-1491911889:10042..10368TCONS_00051082-exon-scaffold_193-1491911889:10042..10368Clytia hemisphaericaexon
TCONS_00051082-exon-scaffold_193-1510915933:10042..10368TCONS_00051082-exon-scaffold_193-1510915933:10042..10368Clytia hemisphaericaexon
TCONS_00051082-exon-scaffold_193-1575043694:10042..10368TCONS_00051082-exon-scaffold_193-1575043694:10042..10368Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_193supercontigscaffold_193:10042..10368 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.80387	1.46588	2.04243	0	3.44211	2.39354	2.70568	3.61861	0.760042	2.19668	0.609187	1.40159	2.39939	3.53004	0.512148	2.01525	1.12846	1.61929	0.319592	4.01316	1.16272	1.27605	1.37885	0	0.949358	3.6694	2.06122	3.51966	2.66954	3.28181
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051082 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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