TCONS_00051081 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051081
Unique NameTCONS_00051081
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length325

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051081 ID=TCONS_00051081|Name=TCONS_00051081|organism=Clytia hemisphaerica|type=transcript|length=325bp
AAAATTTAGACAATTGCGAATTCTGTTCAGACTCCAGACTCTCGACCTAG
CTTTAGAGCAAAGATCATTGATATGTAATTCGAAAGTGAGATTGTTATCA
ATGGTAATACCGAGAAGCTCAACAGAATTCGTAGATTTTATAGTTACATT
TCTGACAGTGATTTCCTAAAACTAGCATTTGAAATTTACCAGGATTTGCA
GCCAGGTAGTTGTTTAAAAACCAGTCTAAGATTATTTCCAGGTCAAACTC
TAGATTCGAGATGACTTCTGCAAGAGTTTCAGCACACGAGTGTAAGGTAT
TATCATCGGCAAAATTGCAAATGCT
Run BLAST on NCBI

transcript from alignment at scaffold_193:138..462

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051081 ID=TCONS_00051081|Name=TCONS_00051081|organism=Clytia hemisphaerica|type=transcript|length=325bp|location=Sequence derived from alignment at scaffold_193:138..462 (Clytia hemisphaerica)
AGCATTTGCAATTTTGCCGATGATAATACCTTACACTCGTGTGCTGAAAC
TCTTGCAGAAGTCATCTCGAATCTAGAGTTTGACCTGGAAATAATCTTAG
ACTGGTTTTTAAACAACTACCTGGCTGCAAATCCTGGTAAATTTCAAATG
CTAGTTTTAGGAAATCACTGTCAGAAATGTAACTATAAAATCTACGAATT
CTGTTGAGCTTCTCGGTATTACCATTGATAACAATCTCACTTTCGAATTA
CATATCAATGATCTTTGCTCTAAAGCTAGGTCGAGAGTCTGGAGTCTGAA
CAGAATTCGCAATTGTCTAAATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032374XLOC_032374Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051081-exon-scaffold_193-1491911889:138..462TCONS_00051081-exon-scaffold_193-1491911889:138..462Clytia hemisphaericaexon
TCONS_00051081-exon-scaffold_193-1510915933:138..462TCONS_00051081-exon-scaffold_193-1510915933:138..462Clytia hemisphaericaexon
TCONS_00051081-exon-scaffold_193-1575043694:138..462TCONS_00051081-exon-scaffold_193-1575043694:138..462Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_193supercontigscaffold_193:138..462 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.83494	2.08758	0.692538	0.33877	3.56894	2.2813	3.14548	2.20857	1.03085	0.957652	0.929521	0	1.42376	0.844905	0.868284	0.372721	0	0	0.650194	0.680382	0.887063	1.29803	1.05195	0.637586	0	0.879131	1.67738	4.9229	0.33944	1.03751
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051081 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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