TCONS_00051071 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051071
Unique NameTCONS_00051071
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051071 ID=TCONS_00051071|Name=TCONS_00051071|organism=Clytia hemisphaerica|type=transcript|length=2414bp
AAATTCACAGTTCTGATactatattttttaatattttagcaaGATCAAAA
AGAGGATAAATAATGTCTCAGCAGGAAATTGTTATCAACGTAGCTGttgt
taaaaacaaaattaaaaaagtttttacttgTGAGACTTTTCCGGAGATCC
TCATTGGAGCAAAATGACGAAGCAGAGATGAATCTTTGTCTATAGCAAAT
GATATATTCACGGTTAAGACAGTTAAGTACACTCTAACTTTTACAACAAC
AGAAGAAAATGTGGTTGAAAATTCTCTGCGTTCTATGGTGGACGTTTTAA
TGAGAAAATCTTTGGCAATTCTAAAGACTCTTCCAGAAAAGGATAAAAAG
ATTGCACTTCACAACGAAATTATCAGGGATGTACAGCAAAAGCCTATCTT
CGCTTCAAAATCCCAGGATGAAGGACACAAAATATCTAGATGGCCGTCCA
GAAACAATAAACCAAGCCTCGAGCAAGAGAAAATCAGTGGTTGAGATTCC
AAAAAGGTTTCATAAATATAAAGGCTACCAGGATTGGaagaaatggagaa
aaaaaacatcaccAATTGACATGAAAAGCTGTCAATCACACGCAGGTTCA
AAAAGTTGCTTTGATGGAAGTATTAGAAAAACGTGCGATTGTTTGGCCTG
AAGACTGGAAAGAAGACATTGTTGGCCTTTGTACATCATTTTCTTCATAC
AGTGATGAATTGAAAGTGGCAAATGAGAATCAACAAAACAGACAATCACA
ATTAAACCCTTCACGAGAGATTTGAAAATGTGCTAACTTTCAATACTGGT
CTCCCGTCCCACGAGACCATgtcaacaaagatttggaaattcTATCAAGC
AAAGTGTCGGAATCAAATAAAAACGAACCTTTTCTATTGTCAGAGGAACA
TTTTGATGAAACCATTCCACGATCTCGCCAATTAAAACGACTAAAGGAAA
TCGCGTTAGAAGTTCCATGCATTTCTTTAAGCACTTTACTATTCATACAA
AAAGTTGCCCCACTGGCTAATGAAAACGAAAGAATGGACACTGTTACAAA
AATGCTGAAAGCTGTAGAACCTGAAATCCCTATCTACCATACTCGAGCAA
TGCGTAAACAGTTTCATGAAGAAGTCAAGCTCATTAGTTCAAAAACTCCT
GCACATGTCATAAGACATATCTACAAGACATTGACTGGGGATCTAAGTTC
AGAACCAATATCCCAGGAAATTGACGAGCGTGTACAGTTAGCCATTGAAA
CTGAAGATCCCGACCTGTTACTTGATCTCCGTCATCTGAGCAAAGGAAGA
CCAGGGGAcacttttgatatcttttttgCAGAATTGGAGAAAATGGTGGA
TGAAGTCACAGCTGCTGATGACCGGAGACATGGAGTTGTTCACATGAGCG
AGTTCTTAAGTATCCATCACTTGATTGAACAGGTGAAAAAGCGTGTAGAA
AAATTCCCTCCCAAACAACAGTAATACACGCTTTTGCCCCAACTAACATC
CTCAAGAAAACTTCTCAGTATTACACTTGGCGCATCAAACTCAAACACGC
TATTCAAAGAAGACAGTTACATGCCTTCCACACAGATGCACATTGGTGCT
CCGCTCTTTACCGATACCTAAGAGAGATGTCCATCGAGAACAGGGAGAAA
TGCATTTTCATCTCTTGTGATAAGGCAAAAGTTGACTTTGGTGAGCCAGG
AGCATTGGTTTCATATGGCGTACGTGGGAGAAAGAGCCCTATTTCAACCA
CATCCATGTTAGGTGCCCTCGATCATGATGTGAATCAAAAAGGTATACAT
TCTTTTTAAAGCGGCCAGAAtgaattttgaatgatttttatggtcctttt
taaattttaaaggaGAGATTAAGCGATTTCGAAAATTGAGTTTAGATTCT
TAAGCTTGAAAAAGAGTAATACACCAATTCGGAAAAACGGCgcgtatttt
tgaaaaaagactgGGTAAGAGTTTAGTGTGGTCGCAAAATCAAAGCATTG
AAAAAACCTGTCATTGAAAACCCACTTATCAGTGTGGATGATATGTTGAT
GATGTCGCAGTCAAAAAaggtctttttttgaaaatttgaaggcaAATGTC
AGTGCAGCATCAGTTGCTACAATTGAATGTGGATAATCCATTTGTTGGTG
CTAGCCCTGTTGGTATAATTTCCTGTTCATGCCACGAAGATTTTTGTTTG
GAGATAAAATGTCCTTCATCCATAAGTCATTAATCGCCAACCGATGAAAA
AACAAAGTTGCCTTACATTAAAGATTCTAAATTGAAAGACACTCATGGTT
ATTATTCCCAGTGCCAGCTACAAATGGGTATAACTGGTTTGAAAAAATTG
CTcctttttagtttaaaagtGCTACTTTTTAGTTTATACAGAACATGGAT
ATCTGATAGACATT
Run BLAST on NCBI

transcript from alignment at scaffold_193:177326..181074-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051071 ID=TCONS_00051071|Name=TCONS_00051071|organism=Clytia hemisphaerica|type=transcript|length=3749bp|location=Sequence derived from alignment at scaffold_193:177326..181074- (Clytia hemisphaerica)
AAATTCACAGTTCTGATACTATATTTTTTAATATTTTAGCAAGATCAAAA
AGAGGATAAATAATGTCTCAGCAGGAAATTGTTATCAACGTAGCTGTTGT
TAAAAACAAAATTAAAAAAGTTTTTACTTGTGAGACTTTTCCGGAGATCC
TCATTGGAGCAAAATGACGAAGCAGAGATGAATCTTTGTCTATAGCAAAT
GATATATTCACGGTTAAGACAGTTAAGTACACTCTAACTTTTACAACAAC
AGAAGAAAATGTGGTTGAAAATTCTCTGCGTTCTATGGTGGACGTTTTAA
TGAGAAAATCTTTGGCAATTCTAAAGACTCTTCCAGAAAAGGATAAAAAG
ATTGCACTTCACAACGAAATTATCAGGGATGTACAGCAAAAGCCTATCTT
CGCTTCAAAATCCCAGGATGAAGGACACAAAATATCTAGATGGCCGTCCA
GAAACAATAAACCAAGCCTCGAGCAAGAGAAAATCAGTGGTTGAGATTCC
AAAAAGGTAATTAAATCTGTCTAAAATGTTTTCGAAGGGCTTTCTCAAGA
TCGAAAGGAAAAGGAGTGTTTTATCATTGAAAAGATCTTACTCAAAGAAT
TTCACATTTTATTTTATTTTAAAAGATTAAACATTCTATGAAGTTTTTGC
AAATTAAGGTGTATTGAATTTTTTTAAATTGAAATTAAACTTTCGAATCT
TTCAGTATATATACACTGGGAATTATTCACTTGACAATCCTACATTGACA
CGACCGGACGACAATTACATTTACCTACGGTGAAACCTTTCCCTTAAAGT
ACTATGTACTCTAATTTTCGGCAACGAAAATAAACTTAAGTGACTGTCGT
GACTGTACACTTTTAAACGTTTTTGAAGACCTGCATGGTCTTTTCAGTTG
AAATAACATAGACCGTTTCCATTAGATGAGACGATTTGCTTCCTTCAAAT
ATTCGAGTTCTTTTTCGCTTTTTTACAGGTTTCATAAATATAAAGGCTAC
CAGGATTGGAAGAAATGGAGAAAAAAAACATCACCAATTGACATGAAAAG
CTGTCAATCACACGCAGGTTCAAAAAGTACTTTTACACTTTTATACTAAC
TTTCCTGTTTTGAAAGTGAATTTGTATTCACCCTTATTAGTAGCTTTTTT
GGACTAAAATTTCCATCTAAAGCTTGACGGAGTCTTGCTTTTATTTCCAG
GATAGCAGTTTTAGTACAGCAGTTTTTCCTAATATGTCTAATACTAAATA
AGCATACTTGTTTCATTTTAGGTTGCTTTGATGGAAGTATTAGAAAAACG
TGCGATTGTTTGGCCTGAAGACTGGAAAGAAGACATTGTTGGCCTTTGTA
CATCATTTTCTTCATACAGTGATGAATTGAAAGTGGCAAATGAGAATCAA
CAAAACAGACAATCACAATTAAACCCTTCACGAGAGGTAAAAACTGAGAG
ATTATCACTTTTTCGTTCATTAAATAAAAAACTTGAGAAACTTATATATC
AGTATCTTTTTGAGCAGACCAGCTTTATATGCAAGAAATTGAAAGGGTTT
TTTACACAGAACTTGAGTTCTGTGACCTTTTTTATATAAAGTTATAATTC
TATTTAGATTTGAAAATGTGCTAACTTTCAATACTGGTCTCCCGTCCCAC
GAGACCATGTCAACAAAGATTTGGAAATTCTATCAAGCAAAGTGTCGGAA
TCAAATAAAAACGAACCTTTTCTATTGTCAGAGGAACATTTTGATGAAAC
CATTCCACGATCTCGCCAATTAAAACGACTAAAGGAAATCGCGTTAGAAG
TTCCATGCATTTCTTTAAGGTAAGGAAAGGTTAAAAAGTATTCATTATTT
TGTAACGTTTTGTTGATTTTATTGCTCTCGTATGTACCTTTTTTTTTCTT
CAAAATCCTTTGCTAAAGGTAAGTAGAGGGCAAAAAGTAAGGAAATTAGA
TTTCTATGTTTTTAACTGTAGAAAAGCTTTTTGCAAACTGAGTTGCGAGT
GAACTGGTGTTTTTATTGAGTTGATATTTTTCTTTGTTATAAAGATCAAT
TTAATCTTATTCTCTTCTTTTTGTTTACACTATTGCTTGACGTTTCAAAA
CGTTTTACCTATTTTATCAACATAAGTATTTTACAGCCCTGTATCATCAA
CCGTATCAAAAGAAAAAACTTCTCAGAAAGTGGGATTTCAACGAGACAGG
GTTTAGCAAGTTAAGCTTGTTCTTGTTCTTGGCTTTGATTATTTTTTTTT
AACATTCAAAATGTTTCAATATTGAATTTCTTTATATATACGATCCTGGT
GGTGTGGTGGATCCAGCACTTTACTATTCATACAAAAAGTTGCCCCACTG
GCTAATGAAAACGAAAGAATGGACACTGTTACAAAAATGCTGAAAGCTGT
AGAACCTGAAATCCCTATCTACCATACTCGAGCAATGCGTAAACAGTTTC
ATGAAGAAGTCAAGCTCATTAGTTCAAAAACTCCTGCACATGTCATAAGA
CATATCTACAAGACATTGACTGGGGATCTAAGTTCAGAACCAATATCCCA
GGAAATTGACGAGCGTGTACAGTTAGCCATTGAAACTGAAGATCCCGACC
TGTTACTTGATCTCCGTCATCTGAGCAAAGGAAGACCAGGGGACACTTTT
GATATCTTTTTTGCAGAATTGGAGAAAATGGTGGATGAAGTCACAGCTGC
TGATGACCGGAGACATGGAGTTGTTCACATGAGCGAGTTCTTAAGTATCC
ATCACTTGATTGAACAGGTGAAAAAGCGTGTAGAAAAATTCCCTCCCAAA
CAACAGTAATACACGCTTTTGCCCCAACTAACATCCTCAAGAAAACTTCT
CAGTATTACACTTGGCGCATCAAACTCAAACACGCTATTCAAAGAAGACA
GTTACATGCCTTCCACACAGATGCACATTGGTGCTCCGCTCTTTACCGAT
ACCTAAGAGAGATGTCCATCGAGAACAGGGAGAAATGCATTTTCATCTCT
TGTGATAAGGCAAAAGTTGACTTTGGTGAGCCAGGAGCATTGGTTTCATA
TGGCGTACGTGGGAGAAAGAGCCCTATTTCAACCACATCCATGTTAGGTG
CCCTCGATCATGATGTGAATCAAAAAGGTATACATTCTTTTTAAAGCGGC
CAGAATGAATTTTGAATGATTTTTATGGTCCTTTTTAAATTTTAAAGGAG
AGATTAAGCGATTTCGAAAATTGAGTTTAGATTCTTAAGCTTGAAAAAGA
GTAATACACCAATTCGGAAAAACGGCGCGTATTTTTGAAAAAAGACTGGG
TAAGAGTTTAGTGTGGTCGCAAAATCAAAGCATTGAAAAAACCTGTCATT
GAAAACCCACTTATCAGTGTGGATGATATGTTGATGATGTCGCAGTCAAA
AAAGGTCTTTTTTTGAAAATTTGAAGGCAAATGTCAGTGCAGCATCAGTT
GCTACAATTGAATGTGGATAATCCATTTGTTGGTGCTAGCCCTGTTGGTA
TAATTTCCTGTTCATGCCACGAAGATTTTTGTTTGGAGATAAAATGTCCT
TCATCCATAAGTCATTAATCGCCAACCGATGAAAAAACAAAGTTGCCTTA
CATTAAAGATTCTAAATTGAAAGACACTCATGGTTATTATTCCCAGTGCC
AGCTACAAATGGGTATAACTGGTTTGAAAAAATTGCTCCTTTTTAGTTTA
AAAGTGCTACTTTTTAGTTTATACAGAACATGGATATCTGATAGACATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032370XLOC_032370Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051071-exon-scaffold_193-1575043694:180569..181074TCONS_00051071-exon-scaffold_193-1575043694:180569..181074Clytia hemisphaericaexon
TCONS_00051071-exon-scaffold_193-1575043694:179999..180096TCONS_00051071-exon-scaffold_193-1575043694:179999..180096Clytia hemisphaericaexon
TCONS_00051071-exon-scaffold_193-1575043694:179639..179803TCONS_00051071-exon-scaffold_193-1575043694:179639..179803Clytia hemisphaericaexon
TCONS_00051071-exon-scaffold_193-1575043694:179256..179467TCONS_00051071-exon-scaffold_193-1575043694:179256..179467Clytia hemisphaericaexon
TCONS_00051071-exon-scaffold_193-1575043694:177326..178758TCONS_00051071-exon-scaffold_193-1575043694:177326..178758Clytia hemisphaericaexon
TCONS_00051071-exon-scaffold_193-1510915933:180569..181074TCONS_00051071-exon-scaffold_193-1510915933:180569..181074Clytia hemisphaericaexon
TCONS_00051071-exon-scaffold_193-1510915933:179999..180096TCONS_00051071-exon-scaffold_193-1510915933:179999..180096Clytia hemisphaericaexon
TCONS_00051071-exon-scaffold_193-1510915933:179639..179803TCONS_00051071-exon-scaffold_193-1510915933:179639..179803Clytia hemisphaericaexon
TCONS_00051071-exon-scaffold_193-1510915933:179256..179467TCONS_00051071-exon-scaffold_193-1510915933:179256..179467Clytia hemisphaericaexon
TCONS_00051071-exon-scaffold_193-1510915933:177326..178758TCONS_00051071-exon-scaffold_193-1510915933:177326..178758Clytia hemisphaericaexon
TCONS_00051071-exon-scaffold_193-1491911889:180569..181074TCONS_00051071-exon-scaffold_193-1491911889:180569..181074Clytia hemisphaericaexon
TCONS_00051071-exon-scaffold_193-1491911889:179999..180096TCONS_00051071-exon-scaffold_193-1491911889:179999..180096Clytia hemisphaericaexon
TCONS_00051071-exon-scaffold_193-1491911889:179639..179803TCONS_00051071-exon-scaffold_193-1491911889:179639..179803Clytia hemisphaericaexon
TCONS_00051071-exon-scaffold_193-1491911889:179256..179467TCONS_00051071-exon-scaffold_193-1491911889:179256..179467Clytia hemisphaericaexon
TCONS_00051071-exon-scaffold_193-1491911889:177326..178758TCONS_00051071-exon-scaffold_193-1491911889:177326..178758Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_193supercontigscaffold_193:177326..181074 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.321611	0	0	0	0.192118	0	0	0	0	0.282241	0.113446	0.163557	0.597137	0	0	0.268704	0.395715	0	0	0	0	0	0	0	0	0.118019
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051071 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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