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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051048 ID=TCONS_00051048|Name=TCONS_00051048|organism=Clytia hemisphaerica|type=transcript|length=1433bp
TGCTCACAAGCTGATCTTTTTGACCACATTTGTGAGCGCGAAAATGTTGT
AAAGAGAATTTTCTTGTATCAAAAAGAAGGTTTGCCAAGCTTGGCAAAGC
TGCAGCTTCATTACTACAAGCATTGGATATCTTGACAATGCTTTTGGATG
AGGTAGAAGGAACAAATCAACTCGTGGAATCTTGTAGAATCTATCTTGCC
AGTGAAGTTTTCATCACAGAGCTTAAAGTCCTTGCTTTCTTCAATCGTCA
TGTTACCTTTCCATTTTTAAACTGTATTGAAAACAGCAGTCAAGATGATC
TCCTCAATATCTTACCACAATTACACAAAGAATTGCTTCAGCAGAAGACT
GACACTTTGAAACAGTTTATTGTATCAATACATGGAATGTCTGAACCCTT
GATGTCAAACGACCTTGAAAAACAAATCATAGGACGGATGTGTTTATCTG
CTGCTGGGGCTGTTCATCGACAATGTGGCAGAGAGTATGGCTTTTCTTCA
GAACCATTTCGCGCTACAGATTTATCAAAGCTGACTATTGACCAACGAAA
AGACTTGCCAACCAACAATTGTATCTCTGAACGTGACTTATCGCGGTTTG
ATGAAGAAGCAGTTGTCGCTCGCTCAAGAAATAGAAGATTTAAAGCAAAG
AACATCAGAAATAACATGGTCCTATACAAATCTCAAAAGAAGgaaatcaa
aatcaatcatATGGCCAAGAGGATCAATCAAATTCTTGTTGGAATGGAAG
TATCCTGGAATGAAAAACAGAAATGAACGTCTGGAACAAAAATTGGAGaa
ggcaaaaaaaatgtaaagattACACAAAACGTTTGCTAAAAGATTGTAAA
TCCTGGGGAGGTCCATGTACATCAGTGGACGAGCTGAAGAATGTCTTGCA
AGGCCAAGACACCCAAGGGAAAAGACTGCGGACAGTCAGACAAGGTTGCA
AGAAAGCAGCTCTTTCGACTAAATGGAATCTCCTACGAAGAAATGCTGGA
GAATTTGTGTATTCTATTGGATGATGAAATTAACGAAAGCACCTCAACTG
TCGCTAACTTACCAACCAACAAAGATGCTATTAAAGCTCTAAAAGATGTA
ATCCCGTCAGCTGAGATATCATCAAGTCCATTCGAAATCAATGAGATGTA
TGTTGTTATGTGGCAAAACTGTGATGCCAAATACGAGTGGTTTGTAGCAT
ATTTGAAGGACCATTTGAAGAGAAAAGTGTCCGGCTCTCATTCAAAATGG
ACATATCCGACCAAGGAGGATGTCCAAAATGTGGAGGAGGCCCAAATTCT
CGATTGCAAAGTTGAAGGAACTTGGAACTTTAGTGCAGACAGTCGAAAAC
GATTGTTTACACTTTTGAATGTTAAGACTGTTTGTGGTGAATTTAATAAA
GTCAAATAAATTTGACACATCTTACGATTATTT Run BLAST on NCBI protein sequence of TCONS_00051048-protein >TCONS_00051048-protein ID=TCONS_00051048-protein|Name=TCONS_00051048-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MLLDEVEGTNQLVESCRIYLASEVFITELKVLAFFNRHVTFPFLNCIENS
SQDDLLNILPQLHKELLQQKTDTLKQFIVSIHGMSEPLMSNDLEKQIIGR
MCLSAAGAVHRQCGREYGFSSEPFRATDLSKLTIDQRKDLPTNNCISERD
LSRFDEEAVVARSRNRRFKAKNIRNNMVLYKSQKKEIKINHMAKRINQIL
VGMEVSWNEKQK Run BLAST on NCBI transcript from alignment at scaffold_193:161133..162804+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051048 ID=TCONS_00051048|Name=TCONS_00051048|organism=Clytia hemisphaerica|type=transcript|length=1672bp|location=Sequence derived from alignment at scaffold_193:161133..162804+ (Clytia hemisphaerica)
TGCTCACAAGCTGATCTTTTTGACCACATTTGTGAGCGCGAAAATGTTGT
AAAGAGAATTTTCTTGTATCAAAAAGAAGGTTTGCCAAGCTTGGCAAAGC
TGCAGCTTCATTACTACAAGCATTGGATATCTTGACAATGCTTTTGGATG
AGGTAGAAGGAACAAATCAACTCGTGGAATCTTGTAGAATCTATCTTGCC
AGTGAAGTTTTCATCACAGAGCTTAAAGTCCTTGCTTTCTTCAATCGTCA
TGTTACCTTTCCATTTTTAAACTGTATTGAAAACAGCAGTCAAGATGATC
TCCTCAATATCTTACCACAATTACACAAAGAATTGCTTCAGCAGAAGACT
GACACTTTGAAACAGTTTATTGTATCAATACATGGAATGTCTGAACCCTT
GATGTCAAACGACCTTGAAAAACAAATCATAGGTATAaagttgaattaaa
aaaaaaagtcattgtCTTGTGATTTTAAGATCATTGAATTAACCATGAAA
TACTGAACAATgagcaaaaaacaaaaatttatacttaatgatatttttct
tgtaaaatttaGGACGGATGTGTTTATCTGCTGCTGGGGCTGTTCATCGA
CAATGTGGCAGAGAGTATGGCTTTTCTTCAGAACCATTTCGCGCTACAGA
TTTATCAAAGCTGACTATTGACCAACGAAAAGACTTGCCAACCAACAATT
GTATCTCTGAACGTGACTTATCGCGGTTTGATGAAGAAGCAGTTGTCGCT
CGCTCAAGAAATAGAAGATTTAAAGCAAAGAACATCAGAAATAACATGGT
CCTATACAAATCTCAAAAGAAGGTAATATAGAATTACTGCTAAATAGTTG
CGATATCTTGAACTTTTATGTGATTTCCTTGTTTTGGGTATTTTGGACTC
ATGCATATCAAACAGTTCTTTACTACTTcaggaaatcaaaatcaatcatA
TGGCCAAGAGGATCAATCAAATTCTTGTTGGAATGGAAGTATCCTGGAAT
GAAAAACAGAAATGAACGTCTGGAACAAAAATTGGAGaaggcaaaaaaaa
tgtaaagattACACAAAACGTTTGCTAAAAGATTGTAAATCCTGGGGAGG
TCCATGTACATCAGTGGACGAGCTGAAGAATGTCTTGCAAGGCCAAGACA
CCCAAGGGAAAAGACTGCGGACAGTCAGACAAGGTTGCAAGAAAGCAGCT
CTTTCGACTAAATGGAATCTCCTACGAAGAAATGCTGGAGAATTTGTGTA
TTCTATTGGATGATGAAATTAACGAAAGCACCTCAACTGTCGCTAACTTA
CCAACCAACAAAGATGCTATTAAAGCTCTAAAAGATGTAATCCCGTCAGC
TGAGATATCATCAAGTCCATTCGAAATCAATGAGATGTATGTTGTTATGT
GGCAAAACTGTGATGCCAAATACGAGTGGTTTGTAGCATATTTGAAGGAC
CATTTGAAGAGAAAAGTGTCCGGCTCTCATTCAAAATGGACATATCCGAC
CAAGGAGGATGTCCAAAATGTGGAGGAGGCCCAAATTCTCGATTGCAAAG
TTGAAGGAACTTGGAACTTTAGTGCAGACAGTCGAAAACGATTGTTTACA
CTTTTGAATGTTAAGACTGTTTGTGGTGAATTTAATAAAGTCAAATAAAT
TTGACACATCTTACGATTATTT Coding sequence (CDS) from alignment at scaffold_193:161133..162804+ >TCONS_00051048 ID=TCONS_00051048|Name=TCONS_00051048|organism=Clytia hemisphaerica|type=CDS|length=1917bp|location=Sequence derived from alignment at scaffold_193:161133..162804+ (Clytia hemisphaerica)
ATGCTTTTGGATGAGGTAGAAGGAACAAATCAACTCGTGGAATCTTGTAG
AATCTATCTTGCCAGTGAAGTTTTCATCACAGAGCTTAAAGTCCTTGCTT
TCTTCAATCGTCATGTTACCTTTCCATTTTTAAACTGTATTGAAAACAGC
AGTCAAGATGATCTCCTCAATATCTTACCACAATTACACAAAGAATTGCT
TCAGCAGAAGACTGACACTTTGAAACAGTTTATTGTATCAATACATGGAA
TGTCTGAACCCTTGATGTCAAACGACCTTGAAAAACAAATCATAGGACGG
ATGTGTTTATCTGCTGCTGGGGCTGTTCATCGACAATGTGGCAGAGAGTA
TGGCTTTTCTTCAGAACCATTTCGCGCTACAGATTTATCAAAGCTGACTA
TTGACCAACGAAAAGACTTGCCAACCAACAATTGTATCTCTGAACGTGAC
TTATCGCGGTTTGATGAAGAAGCAGTTGTCGCTCGCTCAAGAAATAGAAG
ATTTAAAGCAAAGAACATCAGAAATAACATGGTCCTATACAAATCTCAAA
AGAAGgaaatcaaaatcaatcatATGGCCAAGAGGATCAATCAAATTCTT
GTTGGAATGGAAGTATCCTGGAATGAAAAACAGAAATGAATGCTTTTGGA
TGAGGTAGAAGGAACAAATCAACTCGTGGAATCTTGTAGAATCTATCTTG
CCAGTGAAGTTTTCATCACAGAGCTTAAAGTCCTTGCTTTCTTCAATCGT
CATGTTACCTTTCCATTTTTAAACTGTATTGAAAACAGCAGTCAAGATGA
TCTCCTCAATATCTTACCACAATTACACAAAGAATTGCTTCAGCAGAAGA
CTGACACTTTGAAACAGTTTATTGTATCAATACATGGAATGTCTGAACCC
TTGATGTCAAACGACCTTGAAAAACAAATCATAGGACGGATGTGTTTATC
TGCTGCTGGGGCTGTTCATCGACAATGTGGCAGAGAGTATGGCTTTTCTT
CAGAACCATTTCGCGCTACAGATTTATCAAAGCTGACTATTGACCAACGA
AAAGACTTGCCAACCAACAATTGTATCTCTGAACGTGACTTATCGCGGTT
TGATGAAGAAGCAGTTGTCGCTCGCTCAAGAAATAGAAGATTTAAAGCAA
AGAACATCAGAAATAACATGGTCCTATACAAATCTCAAAAGAAGgaaatc
aaaatcaatcatATGGCCAAGAGGATCAATCAAATTCTTGTTGGAATGGA
AGTATCCTGGAATGAAAAACAGAAATGAATGCTTTTGGATGAGGTAGAAG
GAACAAATCAACTCGTGGAATCTTGTAGAATCTATCTTGCCAGTGAAGTT
TTCATCACAGAGCTTAAAGTCCTTGCTTTCTTCAATCGTCATGTTACCTT
TCCATTTTTAAACTGTATTGAAAACAGCAGTCAAGATGATCTCCTCAATA
TCTTACCACAATTACACAAAGAATTGCTTCAGCAGAAGACTGACACTTTG
AAACAGTTTATTGTATCAATACATGGAATGTCTGAACCCTTGATGTCAAA
CGACCTTGAAAAACAAATCATAGGACGGATGTGTTTATCTGCTGCTGGGG
CTGTTCATCGACAATGTGGCAGAGAGTATGGCTTTTCTTCAGAACCATTT
CGCGCTACAGATTTATCAAAGCTGACTATTGACCAACGAAAAGACTTGCC
AACCAACAATTGTATCTCTGAACGTGACTTATCGCGGTTTGATGAAGAAG
CAGTTGTCGCTCGCTCAAGAAATAGAAGATTTAAAGCAAAGAACATCAGA
AATAACATGGTCCTATACAAATCTCAAAAGAAGgaaatcaaaatcaatca
tATGGCCAAGAGGATCAATCAAATTCTTGTTGGAATGGAAGTATCCTGGA
ATGAAAAACAGAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051048-exon-scaffold_193-1491911889:161133..161564 | TCONS_00051048-exon-scaffold_193-1491911889:161133..161564 | Clytia hemisphaerica | exon |
| TCONS_00051048-exon-scaffold_193-1510915933:161133..161564 | TCONS_00051048-exon-scaffold_193-1510915933:161133..161564 | Clytia hemisphaerica | exon |
| TCONS_00051048-exon-scaffold_193-1575043694:161133..161564 | TCONS_00051048-exon-scaffold_193-1575043694:161133..161564 | Clytia hemisphaerica | exon |
| TCONS_00051048-exon-scaffold_193-1491911889:161695..161954 | TCONS_00051048-exon-scaffold_193-1491911889:161695..161954 | Clytia hemisphaerica | exon |
| TCONS_00051048-exon-scaffold_193-1510915933:161695..161954 | TCONS_00051048-exon-scaffold_193-1510915933:161695..161954 | Clytia hemisphaerica | exon |
| TCONS_00051048-exon-scaffold_193-1575043694:161695..161954 | TCONS_00051048-exon-scaffold_193-1575043694:161695..161954 | Clytia hemisphaerica | exon |
| TCONS_00051048-exon-scaffold_193-1491911889:162064..162804 | TCONS_00051048-exon-scaffold_193-1491911889:162064..162804 | Clytia hemisphaerica | exon |
| TCONS_00051048-exon-scaffold_193-1510915933:162064..162804 | TCONS_00051048-exon-scaffold_193-1510915933:162064..162804 | Clytia hemisphaerica | exon |
| TCONS_00051048-exon-scaffold_193-1575043694:162064..162804 | TCONS_00051048-exon-scaffold_193-1575043694:162064..162804 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_193 | supercontig | scaffold_193:161133..162804 + |
Blast
The following BLAST results are available for this feature:
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