|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051042 ID=TCONS_00051042|Name=TCONS_00051042|organism=Clytia hemisphaerica|type=transcript|length=1018bp
TGACActatttttggcactttgattCAAAATCAAGTAATCAACAGATCAA
GCAGCTTTTAACATGGACATGGAAGGATTTGATGGTAAAAGTGTCGAAGA
AGTTACCAACTGGCTAACGATGAAGTTTAATCCAGCTATGGCTCAAAAGT
TCAATGTTAATGGTATTGATGGTGATAATCTCAAGGAGATCATCACTTGT
AAGGAACATCAATTCCGAATGCTTGAGATGGCTGGCATAAGCCTAAAGGA
AATTTTGGCATTCAGAAAAGCATTTAAAAGTCATCAACCTCAGTCCACCA
ATGAATCAAACCCATCTACACCAGATTTGCAAACAATGgaagattttttt
aataaaaaccaacgTTCCGTCATATGTAGCGAATCAAAACGGTACTGGCC
AAAAGGACCTCTACCAACATTCACCACACCTGAAGACGGGAGCACCCCTG
GTACAAATTCAAGTCCACCAAATTCATCCATTCTCATCACAGCAAAGATA
AAGGCAATGAGACGTAAACGATGATGAAAATGCTCAGGTACTCCATTGAG
TTGGATCGAGTTATGTattactaaagtctgttcaaaaaaaattggcagtt
CGCACATTTTCATTCATTGCTCTCGAAAGAGACAagatatattgaaaaat
aatacctCCTTGGAAAGATAATTCTGAGCGGAATATTTTGAggctttaaa
atcttttaaaaactttgaaaatgaagatgaaaaattaagaagaaaaaaat
aaacattttatctACATGAACCGTAAATcatgtgcccaagttcaggaatt
gccataaagccattatggtaataaccgggagggcacattgctatacaatG
TATCTACATGaataaaaatctttaatttacgtttttctaaaacttcgcag
atttcaaatatgtattcAGAAGTTTTATATCTGTCTAATACCGAAAGTTC
CACTTTGGAGGGCAGGAATTTTTGACCCAAGAcagcggcggatctgaggg
ggttcaaatggttcagct Run BLAST on NCBI transcript from alignment at scaffold_193:85695..91115+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051042 ID=TCONS_00051042|Name=TCONS_00051042|organism=Clytia hemisphaerica|type=transcript|length=5421bp|location=Sequence derived from alignment at scaffold_193:85695..91115+ (Clytia hemisphaerica)
TGACActatttttggcactttgattCAAAATCAAGTAATCAACAGATCAA
GCAGCTTTTAACATGGACATGGAAGGATTTGATGGTAAAAGTGTCGAAGA
AGTTACCAACTGGCTAACGATGAAGTTTAATCCAGCTATGGCTCAAAAGT
TCAATGGTATATCAAGCTAAATTTATATTTCATTTATCTATTAGTTCCTT
AGCTTATCttgattcttttaataaagattttctttGACACACAGGACACA
CAATTTGCGTCTAAAAGCGAAGTGAGATATTTTTAGCAAGAAGGAAGAAT
TGGATCCCTTCCTGTTTTGTGTTTATGCATCAGGCTGATGGAGACTTGAT
CCCCTCCTGTCTTGATGTTAATGATCTCATGAGCGCCGCATTTGGAATAT
TAATCACTGGTGCTTGCGAAACTCAGCTAAAGGGAAAATTTAGAGATTGG
AATATACTTGTTACATGGGCGTAGCTATAGCACAGCTTCTCAAGCTCAAG
TGGTGATTTAAAAAGTTTGGCCGCATGTCTGACTGAAACTAGGATGGACG
TAAGTCCCGACTTTTCACTGTTGAGTTATGAGGGTATATTCTTTCCATAG
ATCAGATTCTTTGAATAAAGACAAGCTTTTCTCTTGTGCTATTTTTGACA
GTCAATGTTTGTTGACATACTGCAATTGATGGAATTTCCTGACCGACACA
TATGTGTTTGCATGGGCATTAAGGAAAACATTGTTTAGGGATCAAGGGTG
ATTTTTTACCGTTGATTCATAGCTTCTACGCCCCTACATTTAGTgggggt
cttgggttttgatgaaccaaaagcaagggggtGTTAGNACCGTTGATTCA
TAGCTTCTACCCCCCCTACATTTAGTgggggtcttgggttttgaggaacc
aaaagcaagggggtgttaaaagtatgactttcctagggggttgccagtta
agggggggggtcttcttacctaaggggggtcttccttgaattatgcgaaa
tttcaatcattttatttatactgattttctaagggggtgtgaaattttaa
ataaatttcctaaggggggttagcacttaaggggggggggtcctcttacc
taaggggggtcttgacccctctagaaactatgtgATTGTGTATAGATTGG
AATTGATGGATGGTAAAAGAGGATTACTGTCTACACATCTCGATAGAATT
GTATGCCTAGTTTGGATTGAATGATATACCTTGGGGATTAATATTTGTGG
GAATTTATTTAACTATGCTTCTTAATTAGCATTGGTTATACCTGATGATA
CCTGAGGTACCTTGAGCTCCCCCAATAAATGTCTGTACATCCTGGGGGTG
GAGATATGGTCTAAGggtaggaaaatggtcaaaattggaGGGGGTTTTTA
CTCTGTTATAGAGCAGATTTGCCAATAGTTTAGTACTCTGGCGCTGGCTC
AAAGTCTTGACAGGTTGTGATAttcttttattctaaatggaAGGCTCAag
catagcctggatatccgagctcaaaattttagaaaNAagcatagcctgga
tatccaagctcaaaattttagaaaaaataagttttacctcagccagacaa
agttctaaaattatagagcttggttcacctagaaatcgggtgaacccctg
ttgagggattttcctgcatgaatcccatggctgcaaataaatatatgcac
ataatgacatgcataatttcaagatggtaccccagcagtgataaatcaat
ttagaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNattttgtaaaataggca
gtcgaactctattagctttaaagctagtacagatttgtacacatttttcg
actttaaagaatatatacattaacattagatgagaatgcagacaatctag
gtaaaccagaccgtaaacataagaaatatcaaaatcaaaaagaagtttac
gggctggatatccaggctagctcAAGCAACGCACTCTGAACTTATCTCAT
TGATAAGAATCATTTCAATCTCCTTTTCATTTTACCATATTAACCCAGTT
ATTGACTTTTACATCTTTTTCGCCTGGGTGACTTGCAGAAAAATAGTACA
ATGTCCCATCCGCAACAAAAGCTCCATTTATGAGATATCAAGATCTTGGA
ACTAGAGGACCCCCATNCAATGTCCCATCTGGGAACTAGAGGACccccat
ttttgttttgttgtgacATATTAAATGGTTTCTTGAGTTAAAGACATTTA
TTGCCTTTAAATGatctattttgaattttttaattggTAAAAACTAATAC
GGTCCAAAAATTTGTCCCGTCCGCAACGGCACAAAAGTcttaatttctct
ttttttgagaCAAATTTAATGTTCTAACTGTATCAAGCCAATGAACTATA
GGGAACCACATGCTTTTTGCAGCAGtatcatttttcttgactttacATGT
ACCGGCTATGagtgaaaaactttttgtcctGTCCGCAACAAAGTGTCTCG
TCCGTAACATTTTTCTCAAGATTAGGGctgtaacaaaaaaaaatctataa
caATCCAAAGAAGGCTATTTAGTAGGGTTCACAAAAATGTGAAGTTCTTA
GAAATTGCATTTGCCAAAGTTGAGTTATAGGTCCTCAAAAAGTGCCTGAT
GCTGACGcaacatttttaatttcatttttcatatcctCTGGCAGTAAGGA
TAACAAAAATGCAAgctggaaaatgtttttgataaattatCAAACAGTAA
AGTTGATCATCTTTTTAAAAGCCTTATTTTCCGTtcacattttcaaagaa
aacctCCTCTTGAAAGATTTGGGTATATATCTTTTATATCAgaaaaaatg
actgtttaaAAGCTTGCCCTTATCAAGATTGATCAGAAACAACAAGATTT
GATATGACTACATACCCCTAGAGATTTCTCCAAAGCCTCAAAGTTGGAAA
ATTGACAAATCAAAAAGTGGGCCACATAACCAGACCAATACTTATTTATA
AGCTGCTTTCTTTTTCAGTTAATGGTATTGATGGTGATAATCTCAAGGAG
ATCATCACTTGTAAGGAACATCAATTCCGAATGCTTGAGATGGCTGGCAT
AAGCCTAAAGGAAATTTTGGCATTCAGAAAAGCATTTAAAAGTCATCAAC
CTCAGTCCACCAATGAATCAAACCCATCTACACCAGATTTGCAAACAATG
gaagatttttttaataaaaaccagTGAGTCAATTTTCCTTATGTAGGTAC
ATTTATAAAAGTGCCTTACCTATGCTAAAGgaataattttttgttgttaT
TTAAAGAATTTACAAATACATAAAAACAGCTATCAAAAACCTAAACGTTC
TACCATATAAAAATATGTTAATGGGTTTACTACAGTTTAATGTGAATTTA
GACTTTTTGCAGAGTATTCAAGTTTGACCTGGTAATAAGGAGAACAATAC
TTTTGTGTTTATTTGATTTGCGaattactttaaattttcagacgTTCCGT
CATATGTAGCGAATCAAAACGGTACTGGCCAAAAGGACCTCTACCAACAT
TCACCACACCTGAAGACGGGGTGAGTTGAACAAGTTAGCTGAAGAGCTCA
AACTGAATCCTAATGTTGGccctttaaaagtttctgagatAAAAAGCTAA
CTTTTGTCACACATGATATCGAAAAGACGAAAACTGCGAACCAAAAAAAA
CGAAGAGGTATTTTCATTACTTTTAACTTATTGTTTTTAATGATACAGTT
CacaaagaaattgaagaagCTTTTACTTGGGTCACGCAAGGCGCATTGTA
AACAGCTAGACCTGAGCAGGCCTGAGTtatatttttcacttaaaacctat
aaattgaaactttatttttgtCTCTGACCAAATattattagaaaaataat
ttttttcaaagttttcactAATTTTCTGTATTCCTTTTTCAAGAGCACCC
CTGGTACAAATTCAAGTCCACCAAATTCATCCATTCTCATCACAGCAAAG
ATAAAGGCAATGAGACGTAAACGATGATGAAAATGCTCAGGTACTCCATT
GAGTTGGATCGAGTTATGTattactaaagtctgttcaaaaaaaattggca
gttCGCACATTTTCATTCATTGCTCTCGAAAGAGACAagatatattgaaa
aataatacctCCTTGGAAAGATAATTCTGAGCGGAATATTTTGAggcttt
aaaatcttttaaaaactttgaaaatgaagatgaaaaattaagaagaaaaa
aataaacattttatctACATGAACCGTAAATcatgtgcccaagttcagga
attgccataaagccattatggtaataaccgggagggcacattgctataca
atGTATCTACATGaataaaaatctttaatttacgtttttctaaaacttcg
cagatttcaaatatgtattcAGAAGTTTTATATCTGTCTAATACCGAAAG
TTCCACTTTGGAGGGCAGGAATTTTTGACCCAAGAcagcggcggatctga
gggggttcaaatggttcagct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051042-exon-scaffold_193-1491911889:85695..85850 | TCONS_00051042-exon-scaffold_193-1491911889:85695..85850 | Clytia hemisphaerica | exon |
| TCONS_00051042-exon-scaffold_193-1510915933:85695..85850 | TCONS_00051042-exon-scaffold_193-1510915933:85695..85850 | Clytia hemisphaerica | exon |
| TCONS_00051042-exon-scaffold_193-1575043694:85695..85850 | TCONS_00051042-exon-scaffold_193-1575043694:85695..85850 | Clytia hemisphaerica | exon |
| TCONS_00051042-exon-scaffold_193-1491911889:89613..89817 | TCONS_00051042-exon-scaffold_193-1491911889:89613..89817 | Clytia hemisphaerica | exon |
| TCONS_00051042-exon-scaffold_193-1510915933:89613..89817 | TCONS_00051042-exon-scaffold_193-1510915933:89613..89817 | Clytia hemisphaerica | exon |
| TCONS_00051042-exon-scaffold_193-1575043694:89613..89817 | TCONS_00051042-exon-scaffold_193-1575043694:89613..89817 | Clytia hemisphaerica | exon |
| TCONS_00051042-exon-scaffold_193-1491911889:90086..90164 | TCONS_00051042-exon-scaffold_193-1491911889:90086..90164 | Clytia hemisphaerica | exon |
| TCONS_00051042-exon-scaffold_193-1510915933:90086..90164 | TCONS_00051042-exon-scaffold_193-1510915933:90086..90164 | Clytia hemisphaerica | exon |
| TCONS_00051042-exon-scaffold_193-1575043694:90086..90164 | TCONS_00051042-exon-scaffold_193-1575043694:90086..90164 | Clytia hemisphaerica | exon |
| TCONS_00051042-exon-scaffold_193-1491911889:90538..91115 | TCONS_00051042-exon-scaffold_193-1491911889:90538..91115 | Clytia hemisphaerica | exon |
| TCONS_00051042-exon-scaffold_193-1510915933:90538..91115 | TCONS_00051042-exon-scaffold_193-1510915933:90538..91115 | Clytia hemisphaerica | exon |
| TCONS_00051042-exon-scaffold_193-1575043694:90538..91115 | TCONS_00051042-exon-scaffold_193-1575043694:90538..91115 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_193 | supercontig | scaffold_193:85695..91115 + |
Blast
The following BLAST results are available for this feature:
|
