TCONS_00051006 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051006
Unique NameTCONS_00051006
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1965

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051006 ID=TCONS_00051006|Name=TCONS_00051006|organism=Clytia hemisphaerica|type=transcript|length=1965bp
CACCAGAATAAATTCAGTAGCCGAACTAGACAGTATTCCAATCAAGTAAC
CAACATCATATTATAGCTTAAAATCTGGAGAATTGTAAGGTGCTGGCTAG
TAACATCTTATTAATATCTCTTCTTTTTACATGTCAGAATGCtgacaaaa
aaaggcactttcttgcaaaaatatttacaaaatattgaaatataataatc
GTAAGTAAAATTCCTCCAAAAAGATTTAGTATATGAAGGTGATGCTCATT
GAATTGATATTAGGAAGAAGTCTTTGATTCTCTCAAAAACGTCTCTTAAA
AGCAAATTGGTGCACCGATTGGGGTACcatgctttttaaaataaccTGTT
TGCTATTGTTTTatagatatttgaaaaaagtaactATCCTATATTATAAT
GGTGTTGCAAGCAATTTTGCGaaatcgaattttttttgtagCACTTCTGG
TTTTACTATGGGTTTTGATTTACATGATGCCAACGTTGATGCAAGGATAC
AAAGAGGAGAGAGTGGACTTGCACAGACATGGAAGAACGTTAAATAAAAA
GCCTGTTGTTGAATTGAGGAAGGAAGAAATACCAGTCAATCATCTACAAG
CAGGTTGGTTTCACCAAGGGGAAATGTGTTTAGATGCAATCAACAGTAAG
GAAGATGGGAAGCCAGGCATCTTCAAATGTCATGATACTGGAGATAAACA
GTTTTGGTTTATCATGAAAGATTCAAATGGGTTGCGGAACAAACGCTTGT
GTGTAGAAGGGCCGAAAGATTTGGGAAAACCAGGAGAAGTGAAACTGCAG
AATTGTGATGCTGGAGTAGAAAATcaaGCTTGGGTGTATGAGAGTGAGAA
CTTGAAATTATCTGGTGGTGAATTATGTTTGGAATCGagcttgaaaacta
aaaaagtcAGAGTTGAGGTTTGTGACagtgaaaagaaaaatcaaaaatgg
caGTTGAAAAAACTGGAAGATCTAGAGCCAGACGTAGAAGAAAATATGAA
ACATGAAGACAAAAGTGAAGCCTCACACCACTCAAGTGTACGTGAAAAAC
ACTTGGCTATTGCACCTGTTGTGCCGTTCGATTCCGATTTGAAGTTATGG
GAAACCGAATCGGGGAACATTGACATAAGCTCATACAAATCGGATTCGTT
ACATCGCTTTTGGAAAACAAACGAACATCAAGAAAATTTTGTGCCGTCAG
AAGTCGAAGCTAGtatgagagaaagagcttttcGTATGGAAACCAAATTT
GAACCAGTTGAGCGGAAATGCGGCGCTCAATTACCGCAGGGCGGTGTTTG
TCAGCGTATGGATCGATACAAGTGTCCGTTTCACGGAAAGATAGTTGAAC
GTGACTCCGTAGGGCGAGCTCTTCATCCTGAAGACATTGAACGGGATAAA
CAATTAGATGTGcaacgaaaagaaaaagaatgtcttcaaattcaaaagga
TATCGAGGCAACTACTGGTGTTTCACTTATCAAGAAAAAGAGACCACGAG
TAAGCAAGGCACAAACacgaaaagatattcaaaagaaACGATATGCTCGC
TTAACCAACATCAAGAAAACTGGTGACAATGAAGTTACCTCGAAANAAAG
AGACCACGAGTAAGCAAGGCACAAACacgaaaagatattcaaaagaaACG
ATATGCTCGCTTAACCAACATCAAGAAAACTGGTGACAATGAGGTTACCT
CGAAGAAAGGATTGAAAAATAAAGTGTTTAGTGCACGGAGCTTAGATAAA
ATTTCACATGCTAAGAACCAATCATCTCAACGAAAGCATCAGGAACGATT
TGGGTCAAAttttaattattgaataatTTGGTTTGTTATTACTGTTGATC
AGATGAAAGTTATTTTGAACCAAGATTTGTCTTGTGCTACCTTAAAGTTG
GGTGTAAAGAGCTGTCGTAAATAATTTGCGATGGATAAATTTCTTGTCGC
AAACTCTTTGTCCCA
Run BLAST on NCBI

transcript from alignment at scaffold_192:16093..26666+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051006 ID=TCONS_00051006|Name=TCONS_00051006|organism=Clytia hemisphaerica|type=transcript|length=10574bp|location=Sequence derived from alignment at scaffold_192:16093..26666+ (Clytia hemisphaerica)
CACCAGAATAAATTCAGTAGCCGAACTAGACAGTATTCCAATCAAGTAAC
CAACATCATATTATAGCTTAAAATCTGGAGAATTGTAAGGTGCTGGCTAG
TAACATCTTATTAATATCTCTTCTTTTTACATGTCAGAATGCtgacaaaa
aaaggcactttcttgcaaaaatatttacaaaatattgaaatataataatc
GTAAGTAAAATTCCTCCAAAAAGATTTAGTATATGAAGGTGATGCTCATT
GAATTGATATTAGGAAGAAGTCTTTGATTCTCTCAAAAACGTCTCTTAAA
AGCAAATTGGTGCACCGATTGGGGTACcatgctttttaaaataaccTGTT
TGCTATTGTTTTatagatatttgaaaaaagtaactATCCTATATTATAAT
GGTGTTGCAAGCAATTTTGCGaaatcgaattttttttgtagCACTTCTGG
TTTTACTATGGGTTTTGATTTACATGATGCCAACGTTGATGCAAGGATAC
AAAGAGGAGAGGTTGGTTATCATTCAAGAATGTTTTATTAAAGCTTGTAA
CTCTTGTTCTTTTTATACGTAATTTAATTACAATCACATTTTATGGATTT
GTGATAGATTTCTACATAGTACATTGTTATTTTGTTCATAAGATGAAATA
TTACGATTTCAATTTTAATGGGCTACTCCacaaatagtctgtacccccca
TTTTGaagaggtgtgacgtccagggtggcctggaaaataaaaaaaatcca
gggtggtcactAAAATTGGGTTAAAAAaccagggtggtcagtataacgag
gtcgaaaatGTGGTcccaaagaaatggaagaaaaaaatccaaggtcctga
aaaattggaaaataatcTAGGGGACTcaccttaaaaaaaaaagatctcct
caacatagggagtacagattttttctggaatagcccaatttgTAGGTTTG
AATTTTATGATAGTAAACACTTAATGAAAGGATCTAGGATGAACTAGACA
TCGGTACTATGATATGACTTTAGAGTGGACTTGCACAGACATGGAAGAAC
GTTAAATAAAAAGCCTGTTGTTGAATTGAGGAAGGAAGAAATACCAGTCA
ATCATCTACAAGCAGGGTTTGTTGGAATTCTATTCTAAAAAACTATCGAA
TTATCATGCCCTTTTTAATTGCTGTATTTTTAGGATTTAAGGTTGTATCT
TTTAGAATCATTATACAGTATAATATCACATTGTATCCAATCTTAGatac
aaattaaaaagaaagtccTTCTGAGccacttgatttttttaattgcaaTC
CATTTCCCCTATCGTTTCTATAGTTGGTTTCACCAAGGGGAAATGTGTTT
AGATGCAATCAACAGTAAGGAAGATGGGAAGCCAGGCATCTTCAAATGTC
ATGATACTGGAGATAAACAGGTATTCTTCCAGTCTACGTTGATGTTTTTT
CTCAAGATATAtgatttctttatttaaaaaaattatttttcaggcCTTGA
AACAACTAAGATATTCAtggtatgcaccattgcaatgtcttctgacatta
cattacggacccaacagctgattggttgtaagtgacgtaaaatcagtcaa
tacgtcattttcaaccaatcagttgtTGCGTCCGTGgaaaacattgcaat
ggtgctACATATCATGGATAGAGCTGAATTGTTTACATTCTTTGGAGATT
AATTCATTACATCAAGATCTATTTTTTACGTTAtaccttttgtttttatt
aacaaaatgaattaaataaaaatcaatttactGACATGGTTTCTAAATGA
TACCAAGAAAGAGTGCACTTTTTTGTTACATGTGAAAACCGTGTCAAGGT
GATTGTACTAAATCCCTTGGGAGTGGTTTCTACATGGAAGCAAGAGTGAG
TACAGTTTTTTTTgagtagttttttttttgctcttcTGCAGTTACCTAAA
GTTGACTAAAGTCCTAACTTAGTTCTTGAAGGAATAATTTATGTCTATTT
GTTGACTCTTAGTTTTGGTTTATCATGAAAGATTCAAATGGGTTGCGGAA
CAAACGCTTGTGTGTAGAAGGGCCGAAAGATTTGGGAAAACCAGGAGAAG
TGAAACTGCAGAATTGTGATGCTGGAGTAGAAAATcaagtatttattttt
aatttagaaTATCTTCATCTCAAAGAAACATCTAAAAATACATTACTTAA
AGTTTCATGTTTGTAGCACAATCGTCAGTTTAAAGAACTATCCGTATTCG
TTAGAAAAgccaaatatttatttttctcttgccCCTTTTGATGTTACAAC
TTCATAAATTATCTTTATTCTATTTTGAAGAGAAACATGAGAGCCATCAG
ATGTGtaacaaaaaagttacaaaagaATTAAGTGCTTCTTGTTTTCCGTG
CCTTTTCTGGggccgaaaaaaaatctcttggGTAGTTCGTGGATCCAAAA
AAGTCGTGGGTGTGCAGGTTCTTGTTTAAGCATCTATAACGTCGGAACAT
CGGGTGTTTCCAGTTGTTcatacaaactgatattatcttttaaaaattat
cGTGTAATCATAttataacacccatattactgtattgcacgtacacgttt
ttttttataagaacaaactatataagaacataaggcttcgaggcccaaaa
acttaagaacattctaagaacatactaaggctttggagacttaaaaacat
tcAACTTCTTaagaaatcaattcaaaatgctcaaaaaatgctgaaaataa
gaatattttaagaacatttttaggcttcaaatccaaaatactaagaacat
ctgaaggcttcgaaaatttttgacgttcttataaaaaaaaaacgtgtatt
aaaaACAATTCCATGCTAATAAAATTAGTGAATTATTTATACGCTAGAAA
TCTATCTACGGTCAATGTGCATTGACTCAAATTAGAATCTTTGAAAGTcc
cttttataagaataatttatcttatttttcaGGCTTGGGTGTATGAGAGT
GAGAACTTGAAATTATCTGGTGGTGAATTATGTTTGGAATCGagcttgaa
aactaaaaaagtcAGAGTTGAGGTTTGTGACagtgaaaagaaaaatcaaa
aatggcaGTTGAAAAAACTGGAAGGTATTTAATAAAGGATTGTAACTTCT
TGGAAAACATTGTTTGAGAAGTGTTACTTACAATCTTTGAGatgggctgg
agtttttacaagagacttcactaattggttatttgaagtaatagagatga
cgcgttctttagaaaaagtaacaaaattgttttattacaggttaacgacc
aaccaaatcaaacgagagcttgtaaaaactccagcttgtccccaaTCTTT
GGATCTTAAATCTGAAACAAAAATCTAATATTGattccaagaagtttttt
ttatctttgaatcAGATAATTATATGTCTAAGTTATTTATTTATATACAA
AGGCACTAATGTGTTTGTTTGTGTTATCCGTAGATGCTATATATTTTTGT
ACTATGGTCAAGAAgacttttatattttatataataTTAGGTTGAGTAAA
TGTTTGTTTTCTAACTGAAATGGCTTTGATGGCTCGCAACGAAATTCTgc
ccccagctggcacacaacgttgtttcaacgctcatctaacgttatatgga
cgttgtgaacattagataaacgttgaaataacgttgtgtgccagctgcaT
ATGGCCAACAAAAACAATCTACCGATTCTGtagattatattttttattct
gctgagaaactttttgattttttcgaagcTATATGCAATCgtctaattca
tgatatgcaccactgcaatgacctcacgaaattatgcaactttctgtttt
tgttccacccaaaacgtcactttttctattgtttaagtgacgtatttgGT
GGATAATTTcgaaagttctcagaagactctccagtggtgcatatcatgaa
tactaatGAAGTATAATGGAAGGTTAGTTGAGCGGATCTCCTACGAAGGA
TTTGCTGCAACCTGTTTCCTACCTAAGTTACGCGGCACGTCTTGCTTTGA
AACAAATGCTATAGTGAAAATGATACTTTCTGCTGGGTTTTGAAAAACGT
AGGCGCACGTCTGAAAAGTTGTGAAACCTTTAGGCATTTCTTGTCAGGAA
AAAGTTGAAGGTTCACTTCTAGCCATTTGGTTTATAATTCATTGTATAAT
GCcgaattattttgttttcgaTATTTTCTCCTACTgttttcaatatcatt
tttggacctaccccggtggggtggaggtcctataaattaacctgtgttcg
ttcgttcgttcgttcgttcgtctgttaccaacttttctcaggattgaatc
ataggaatcttttgatttttggtccAAAGGTGCGAaacggtggtggccaa
aatgtgacggagcccgattttcgaaaaaaaaattttgggggcaaatttgg
gccaaaaaacggctaaaaaacgggttttttggactttgtgaaaaattgga
tcattaattttttctgattttttgcatgaaagtagggtaccatcataggt
aaaagatggctcaattagatttttgcaaaaaaatttatttggcttaaaaa
acgcatgtttatctataagaatcactattaataagcatatatcaatcttc
ttagtcaaattactcaatttctttatgagatagatgtttttttgctcata
agggcttacttttgaagaatatgtgtgtttagacatgaaattttggttgc
ttggcgtgtttttatagaaaaactggccaagttcaatatttttttataag
cacgttatcaattacttaggtattagcttttctcgagattggctctttca
ttctttaagacattttgcacaaagatgcataactataaacccttgaatgt
gacggagcccaatttttgaagaaaaaaaaatgttttggggcaaatttggg
ccaaaaaacggctaaaaagcgggttttttggactttgtgaaaaattggat
tattaatttttgctgattttttgcatggaagtagggtaccatcataggta
aaagatggctcagggagatttttgcaaaaaaaatttgttggctcaaaaaa
cgcatgtttatctataagaatcactattaataagaatacattaatgttct
tagtcaaattactaaatttttttatgagatagatgttttttttgctcacg
agggcttaattttgaagcatatgtgtgtttagacatgaaattttggttgc
ttggcgtatttttaaagaaaaactgcccaaatttgatatttttttataag
cacactatcaattacttaggtattagcttttctcgagattggctctttca
ttctttatgatttttttgcacaaagatgcattNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNaaccctcgaatgtgacggagcccgattttcgaaaaaaaatgtttttg
ggcaaatttgggccaaaaaacggctaaaaaagggttttttggacattgtg
aaatattgcatcgttgtttttttctgattttttgcatgaaagtaggtaaa
agatgggtcaagcagatttttgtaaataaacttttcagctctaaaaacgc
atctttatctataagaatcactattaataagcatacatcaatgttcttag
ccaaattactcaattttttgatgagatagatgtctttttatgctcacgaa
gtcttgaatatgaaagaataatttcaagagtatgaaattttggtttctaa
acgttttttttataagaaacaaacgactaattttaataaatcttcactat
ttgtgttttgaatgattgtttaacgttcatgctcacgtagatatcaatta
tatatgtgttaaatgcataaccaggtaggtccataaaagtatcacttgtt
ttatttTACCTAGTCGATTTCATATAAAGCctaattttgaataattattc
AAATTCATAATATTAGTTGATTTCAGTTATAGAGATTTTAATTTTGAGAA
GGTTTTTTTActataatatttttataatgtgacaaatcaaaagaaattta
tttaCAATTTATTACAATTATAAATGTATATACCTaattaaaaatagttt
ttttacaaaattatgCTATATTATATTAGATTTATGAAATTCGAAACGTT
TCATTACTTTAGAACCAAATTTAGATGTCAAGATAATTTATCTTGACTAA
AATTCAAACTGAAATCGGTGAATACTTTAAAAGAGTCTTTGATTTTAGTA
TTAATTTTAACTTTCATAATCAGTTTGCTTGGCGAGGTCCTATTTTTCGA
TTTATGTTCTTACCATTTCTGGCTCTTTTTCCAACCTCAGCTTTTCTACT
TCAAACTTTCCCACCGGTTATTGATGTAaacgttttcttttataagaaca
tccaaaattgttGAAGCCTTCGTATGTTCTTAAATATTTTAGTTTTAAcc
ctaaaaattttctgaacATGTTCTAAATTTggccattttgtgaatatttt
agtccattttcctaagaaattgggtgttttagggtccgcaaagtcttaaa
ttgttcttaacttgctcttaaaattttggcaatcgaagccttatgttctt
atatagtttgctcttataaaaaaatgacgaAGAGTCATTTCAAGCTAACA
AATATCTATCTTTTCATTCTagaaacaaagatataaaaccTATGAATTAG
AGGTCGGAAATCATGGCAGATTTTCCGGAAATTGAGGATTTGATAGAAGA
ATTAACAACAACCGGTAAAGAGGAACTAGACCGAGACCATTTGAAGAAAT
TGTTGAACTTATGTCGGAAATCTCATCCCAACCTGGAATTTTCTTACACT
AAGCTATATGAGCAATTGCAGGAAGAACATTCTGAGATCCGTTTTTCTGC
ATTTCAAATCATGgataaattgtttttaagatcGCATCGGTTCCGTGAAC
TCTTACTACAGGACGCACCTGATATTTTGGTTGTTGCTATGGGAACAGAT
CAGCATGATCGACCGTTACCACCACCTTTGAAGGTTGCTAAGCAACTACA
AAAGATGGCTTTAGAGAAGTTAAACACATGGTATGAACGATTTGGTAAAG
GTTACCGGTTACTGGAACTCGCTTTTGAGTTTGTAAGAGATGTGAAGAAa
gtaaaatttgatgaaatgcAGGTACGGACAGCGGCTGAGGTAAGAAACAC
TCAACAGGCTAAATTGAAAGAAGTGAGGTTAACAGCTTCAAAGCTAGAAC
AAGTAGATATACAATATGAAGATCGTAAAGAGAGTTTTCTCTCAGATATC
AAACAAATGAAAAGCTGCTTTGAAATGCTGGTGCAAAAATTATCGAACCA
GCACACAGATACGGGAGACAGCGAAACGATCCATGATCCGGGATTCCTTG
AGGGCAATGAATCTGGCATTACGTCATATAATTTTACGTTGTCTTTGTCG
ATTTCTCAAAAGCATGTTATTTACGAAACACCGGATAACGAGGATGCTAT
ACGAAGGTTACGCGAACTTTATAAGGAGAATCGGGGTCATGAAAATGAGG
CTAAGCGCTGGTTAAACGTATTATTAAAATGCGGGTCAACAGATAAATGG
AAGATTGAAGAGATTTTGAGATTGAAGAACACTTTAAGTGGGTTGTGTAG
TCAATTTTTGGATCTGGAGATTCGGGAAGATGGTTATTTCAGTTCTGATG
ATGATGGAGGAGAAATGTTTGTGGAAGTACCGGAAAAAATGATGAAGACT
TATGTTTATTCAGATATTGATGTTGAGGAAAGACCAACTTGCAGTCGATG
TGAGTactttcaataaattttattgTATACTGTAGCTAGAAAGTCTCAAC
CTGAAAAGTGTGTATGGTTTGGGTTATGTTTCTAGACTCTCCAAAGTTCC
TTAGCAGCGACAAGCAATAGTACTTTAAAAGATCCAGGTTATTCTATAAT
CAGAAGGTTCTCattgaatttcttttaattAATCAATGTCATCAAATTAA
AATagtatcaaattaaaaattttattttcaggcgaaaattaaaaaaatgt
agtgtttccggaaaccggccgagtgaaaataaagatttttctgacccggc
cgctgACTATGGGTTTATCTAcatggttcatcataaagaaaatcaaattg
aCCGTTCAatctatcaaacgtcgtttggttagatattcccacttgtaaat
caagtttcgttcgttagtagttgatacattagtattcagggcttagttca
tactgtttgtacataaaagtttaaaatcttctatttcaatgatcttaagt
tatcaaaaatagcacaaaaagaattttccggcCCGCCGCaagagagcttt
tttccttcacccgcattccggaaacacaacatttttttattttcgcctta
ggATAAATGAATGCTATACTATCTGTTTTCAGATCTAGAGCCAGACGTAG
AAGAAAATATGAAACATGAAGACAAAAGTGAAGCCTCACACCACTCAAGT
GTACGTGAAAAACACTTGGCTATTGCACCTGTTGTGCCGTTCGATTCCGA
TTTGAAGTTATGGGAAACCGAATCGGGGAACATTGACATAAGCTCATACA
AATCGGATTCGTTACATCGCTTTTGGAAAACAAACGAACATCAAGAAAAT
TTTGTGCCGTCAGAAGTCGAAGCTAGtatgagagaaagagcttttcGTAT
GGAAACCAAATTTGAACCAGTTGAGCGGAAATGCGGCGCTCAATTACCGC
AGGGCGGTGTTTGTCAGCGTATGGATCGATACAAGTGTCCGTTTCACGGA
AAGATAGTTGAACGTGACTCCGTAGGGCGAGCTCTTCATCCTGAAGACAT
TGAACGGGTATGAGATGTGATTCCAGTAATACACTTGGTTTATACTAGAC
ATCACGGCTCTTGTTTTCTACGTAGTAACCACAGCAAAAGATGAGCAGAT
CACCCGGTTGGGAAAAGAGCATTTCACTCCTTGGAACTTACAAGAAAGTC
CCACAATCATTCGCACCAAGATGTGAAATTATTTTTCCCATTCAAATGAT
TTGTTCAATTTTTCCTGcgaacgtctattccactttgcgactttttcgaa
tatctatagcccaggttttcgggtgTAATTCAAAGTGTAACTCACACCAA
GAAGCGGAATGAAAGTTGTCTGTGTGTCAGCCCAATGAAACCAGCCATTG
ACGTCATTCAACTCTAGTTTACTTAAACCCAGCTTCCTTCACTTACCTTT
TGGTGCAAGGGTTGGGTCATTCCATATATTATATCCATACGATGGAGTGG
GACGCACATGGGGGATGTAAATgcgtaaagaattatttttaaattttcca
ggTGGTAAAAGACTGATGTTAgctcgtccaccctcacttttaaaatatga
aaataatttttctttccaagGGGTATCAACACATTTTcaagaaatgtttt
tgattttaaaaggttcgtccacgccctgtattaccgagtttatatattgg
aggatatcgagggcgacggtaagtgaaatgatacaaaacaaagtcgatag
ttgatgtacggctctatattgcctttgctcacctaaacagacgacggtat
tttagtgtttttaccatcgtcgagcaaagtggacggtgattttggagaca
ggtcaactttgctttataccgtcctctagtctgaatcgcagacctctaca
aaaccccaggtagtatatcTATAAgaagcacgaatccgttagtggatgcc
agcagcctaaccGTCCTCTCGATTTATCTCGAgcacataaactcgctatt
aaaatttgatgaaatggCCCATTGAAGCCAAGTTTCTCCTATAAGATGAT
CGGTTTTCGGTGATATTCGTCTGTTACAGACCGTAAGATCCAAATCACAA
ACGATAGCGGGCTACAGATATGAGCTTTCCTTCCTATCTCTTTTTTTCTG
TAGGATAAACAATTAGATGTGcaacgaaaagaaaaagaatgtcttcaaat
tcaaaaggaTATCGAGGCAACTACTGGTGTTTCACTTATCAAGAAAAAGA
GACCACGAGTAAGCAAGGCACAAACacgaaaagatattcaaaagaaACGA
TATGCTCGCTTAACCAACATCAAGAAAACTGGTGACAATGAAGTTACCTC
GAAANAAAGAGACCACGAGTAAGCAAGGCACAAACacgaaaagatattca
aaagaaACGATATGCTCGCTTAACCAACATCAAGAAAACTGGTGACAATG
AGGTTACCTCGAAGAAAGGATTGAAAAATAAAGTGTTTAGTGCACGGAGC
TTAGATAAAATTTCACATGCTAAGAACCAATCATCTCAACGAAAGCATCA
GGAACGATTTGGGTCAAAttttaattattgaataatTTGGTTTGTTATTA
CTGTTGATCAGATGAAAGTTATTTTGAACCAAGATTTGTCTTGTGCTACC
TTAAAGTTGGGTGTAAAGAGCTGTCGTAAATAATTTGCGATGGATAAATT
TCTTGTCGCAAACTCTTTGTCCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032337XLOC_032337Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051006-exon-scaffold_192-1491911889:16093..16603TCONS_00051006-exon-scaffold_192-1491911889:16093..16603Clytia hemisphaericaexon
TCONS_00051006-exon-scaffold_192-1510915933:16093..16603TCONS_00051006-exon-scaffold_192-1510915933:16093..16603Clytia hemisphaericaexon
TCONS_00051006-exon-scaffold_192-1575043694:16093..16603TCONS_00051006-exon-scaffold_192-1575043694:16093..16603Clytia hemisphaericaexon
TCONS_00051006-exon-scaffold_192-1491911889:17116..17208TCONS_00051006-exon-scaffold_192-1491911889:17116..17208Clytia hemisphaericaexon
TCONS_00051006-exon-scaffold_192-1510915933:17116..17208TCONS_00051006-exon-scaffold_192-1510915933:17116..17208Clytia hemisphaericaexon
TCONS_00051006-exon-scaffold_192-1575043694:17116..17208TCONS_00051006-exon-scaffold_192-1575043694:17116..17208Clytia hemisphaericaexon
TCONS_00051006-exon-scaffold_192-1491911889:17416..17512TCONS_00051006-exon-scaffold_192-1491911889:17416..17512Clytia hemisphaericaexon
TCONS_00051006-exon-scaffold_192-1510915933:17416..17512TCONS_00051006-exon-scaffold_192-1510915933:17416..17512Clytia hemisphaericaexon
TCONS_00051006-exon-scaffold_192-1575043694:17416..17512TCONS_00051006-exon-scaffold_192-1575043694:17416..17512Clytia hemisphaericaexon
TCONS_00051006-exon-scaffold_192-1491911889:18105..18230TCONS_00051006-exon-scaffold_192-1491911889:18105..18230Clytia hemisphaericaexon
TCONS_00051006-exon-scaffold_192-1510915933:18105..18230TCONS_00051006-exon-scaffold_192-1510915933:18105..18230Clytia hemisphaericaexon
TCONS_00051006-exon-scaffold_192-1575043694:18105..18230TCONS_00051006-exon-scaffold_192-1575043694:18105..18230Clytia hemisphaericaexon
TCONS_00051006-exon-scaffold_192-1491911889:19075..19216TCONS_00051006-exon-scaffold_192-1491911889:19075..19216Clytia hemisphaericaexon
TCONS_00051006-exon-scaffold_192-1510915933:19075..19216TCONS_00051006-exon-scaffold_192-1510915933:19075..19216Clytia hemisphaericaexon
TCONS_00051006-exon-scaffold_192-1575043694:19075..19216TCONS_00051006-exon-scaffold_192-1575043694:19075..19216Clytia hemisphaericaexon
TCONS_00051006-exon-scaffold_192-1491911889:24575..24999TCONS_00051006-exon-scaffold_192-1491911889:24575..24999Clytia hemisphaericaexon
TCONS_00051006-exon-scaffold_192-1510915933:24575..24999TCONS_00051006-exon-scaffold_192-1510915933:24575..24999Clytia hemisphaericaexon
TCONS_00051006-exon-scaffold_192-1575043694:24575..24999TCONS_00051006-exon-scaffold_192-1575043694:24575..24999Clytia hemisphaericaexon
TCONS_00051006-exon-scaffold_192-1491911889:26096..26666TCONS_00051006-exon-scaffold_192-1491911889:26096..26666Clytia hemisphaericaexon
TCONS_00051006-exon-scaffold_192-1510915933:26096..26666TCONS_00051006-exon-scaffold_192-1510915933:26096..26666Clytia hemisphaericaexon
TCONS_00051006-exon-scaffold_192-1575043694:26096..26666TCONS_00051006-exon-scaffold_192-1575043694:26096..26666Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_192supercontigscaffold_192:16093..26666 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.115076	0.200323	0.161602	0.101324	0	0	0.247341	0.260119	0	0	1.66448	0.879072	0.485486	0.32673	0.901707	0.621591	1.34005	2.85579	1.35726	1.84265	0.177992	1.24949	1.59823	0.450499	0	0	0.405619	0.699716	0.906866	1.90868
Blast
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BLAST of TCONS_00051006 vs. Swiss-Prot (Human)
Match: UVSSA (UV-stimulated scaffold protein A OS=Homo sapiens GN=UVSSA PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 3.428e-30
Identity = 75/181 (41.44%), Postives = 101/181 (55.80%), Query Frame = 3 
Query: 1056 AIAPVVPFDSDLKLWETE---SGNIDISSYKSDSLHRFWKTNEHQENFVPSEVEASMRERAFRMETKFEPVERKCGAQLPQGGVCQRMDRYKCPFHGKIVERDSVGRALHPEDIERDKQLDVQRKEKECLQ---IQKDIEATTGVSLIKKKRPRVSKAQTRKDIQKKRYARLTNIKKTGDN 1580
            A APVVP+  DL  W  E   +G I     KSDS HRFWK +E +E  V +++   +R R      KFEPV+  C A  P G +C+R DR KCPFHGKIV RD  GR L PED  R+++  +Q++E+   Q   + +D+EA TG  L        S+   +   +K+RY  LTN+K   D 
Sbjct:  497 ARAPVVPYGVDLHYWGQELPTAGKI----VKSDSQHRFWKPSEVEEEVVNADISEMLRSRHITFAGKFEPVQHWCRAPRPDGRLCERQDRLKCPFHGKIVPRDDEGRPLDPEDRAREQRRQLQKQERPEWQDPELMRDVEAATGQDLGS------SRYSGKGRGKKRRYPSLTNLKAQADT 667
The following BLAST results are available for this feature:
BLAST of TCONS_00051006 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UVSSA3.428e-3041.44UV-stimulated scaffold protein A OS=Homo sapiens G... [more]
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