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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051000 ID=TCONS_00051000|Name=TCONS_00051000|organism=Clytia hemisphaerica|type=transcript|length=1174bp
CCCAATCTCATCCCGTTCAGGCAAACCCAACGTTCTTTCCAAGTACCTTT
CAGACTTTATTAATGAAAACGAACTGTTACCAATTGACATTACGCATGGT
GAGGTTCCCAATTATACATATCAACACTTTACCTTAGCAAATTCGTCATA
CATCGACCATATCCTAGTTCCTGCATCCTCTATAGAAACTATCATCAAAG
TATCGGTACACGATCCTGACCCTGACAACACCAGTGACCACCTTCCGGTA
TCAGCTATTTTTCACACACCGTTCACACCAACAATAAACGAGGATGTCGT
CGACAACACCCTTGAATCTGACTTTGTTCCAAACCATCTCtggaaaaaca
acaaatttgttgATCTCTACCGATCTTACGTAGCCACAGCCATCAACAAA
CTTGATTTTAGTTCTGAGGATGCGTTAGACGAATTCCACTCCACCCTCCG
TTCATGCGCCAGTGAAGCCTGCAAGTCCTTCAAAGAAACTGCATATGTTT
TCCAATCCAAACCATGGTGGAATGACGATATCCGAAAAGCCCACAAGGTC
CTACGTTCAATGTTTAATATCTGGAAGCACAACGGTTTCCCTAAATCTCC
TACTGACACTTCATATTGTCGATATAGATTCGCACGCAAATCCTTTCGTT
ATCATGTAAAGCGTGCTAAGACCAATGCTACAGCCAGACACTACATCAAT
ATTGATAAACTGAAAGACGTTAAACCAGAATCCTATTGGAAAAGACTTAG
ATCCTTGAGAAATGATGATCAAAAACTCTATACAATAAATGGTAAATCCA
ACAAGTCAGATATTACAGATGAATTCCATTCTCATTTCAATAACTTGTTA
AACACACCGCGTGTTCCTAATACTAACAACGCAGAATCCAATCTAAAACT
CAACGAACTTCTGCAGCAGATAAATCAAGATCCCTCAGATGATTTCTACG
TCACTGAATCGGACGTAGCAGATGCTCTCAGTCGTTTGAAATTCGGAAAG
TCTAGAGATCCCTTTCAGATCAAAGCGGAACATTTTCTCTGTGCGGAAAG
CCCTACTTTCAAGTCATACCTGACTGACCTacttaacaaacttttttcgt
CATCACGTTTACCAAGCCAACTAGGCACTTCAATTCTTATTCCACTCGTT
AAATCCTATAAGAAATCATTAAAT Run BLAST on NCBI protein sequence of TCONS_00051000-protein >TCONS_00051000-protein ID=TCONS_00051000-protein|Name=TCONS_00051000-protein|organism=Clytia hemisphaerica|type=polypeptide|length=391bp
PISSRSGKPNVLSKYLSDFINENELLPIDITHGEVPNYTYQHFTLANSSY
IDHILVPASSIETIIKVSVHDPDPDNTSDHLPVSAIFHTPFTPTINEDVV
DNTLESDFVPNHLWKNNKFVDLYRSYVATAINKLDFSSEDALDEFHSTLR
SCASEACKSFKETAYVFQSKPWWNDDIRKAHKVLRSMFNIWKHNGFPKSP
TDTSYCRYRFARKSFRYHVKRAKTNATARHYINIDKLKDVKPESYWKRLR
SLRNDDQKLYTINGKSNKSDITDEFHSHFNNLLNTPRVPNTNNAESNLKL
NELLQQINQDPSDDFYVTESDVADALSRLKFGKSRDPFQIKAEHFLCAES
PTFKSYLTDLLNKLFSSSRLPSQLGTSILIPLVKSYKKSLN Run BLAST on NCBI transcript from alignment at scaffold_191:6805..7978 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051000 ID=TCONS_00051000|Name=TCONS_00051000|organism=Clytia hemisphaerica|type=transcript|length=1174bp|location=Sequence derived from alignment at scaffold_191:6805..7978 (Clytia hemisphaerica)
ATTTAATGATTTCTTATAGGATTTAACGAGTGGAATAAGAATTGAAGTGC
CTAGTTGGCTTGGTAAACGTGATGacgaaaaaagtttgttaagtAGGTCA
GTCAGGTATGACTTGAAAGTAGGGCTTTCCGCACAGAGAAAATGTTCCGC
TTTGATCTGAAAGGGATCTCTAGACTTTCCGAATTTCAAACGACTGAGAG
CATCTGCTACGTCCGATTCAGTGACGTAGAAATCATCTGAGGGATCTTGA
TTTATCTGCTGCAGAAGTTCGTTGAGTTTTAGATTGGATTCTGCGTTGTT
AGTATTAGGAACACGCGGTGTGTTTAACAAGTTATTGAAATGAGAATGGA
ATTCATCTGTAATATCTGACTTGTTGGATTTACCATTTATTGTATAGAGT
TTTTGATCATCATTTCTCAAGGATCTAAGTCTTTTCCAATAGGATTCTGG
TTTAACGTCTTTCAGTTTATCAATATTGATGTAGTGTCTGGCTGTAGCAT
TGGTCTTAGCACGCTTTACATGATAACGAAAGGATTTGCGTGCGAATCTA
TATCGACAATATGAAGTGTCAGTAGGAGATTTAGGGAAACCGTTGTGCTT
CCAGATATTAAACATTGAACGTAGGACCTTGTGGGCTTTTCGGATATCGT
CATTCCACCATGGTTTGGATTGGAAAACATATGCAGTTTCTTTGAAGGAC
TTGCAGGCTTCACTGGCGCATGAACGGAGGGTGGAGTGGAATTCGTCTAA
CGCATCCTCAGAACTAAAATCAAGTTTGTTGATGGCTGTGGCTACGTAAG
ATCGGTAGAGATcaacaaatttgttgtttttccaGAGATGGTTTGGAACA
AAGTCAGATTCAAGGGTGTTGTCGACGACATCCTCGTTTATTGTTGGTGT
GAACGGTGTGTGAAAAATAGCTGATACCGGAAGGTGGTCACTGGTGTTGT
CAGGGTCAGGATCGTGTACCGATACTTTGATGATAGTTTCTATAGAGGAT
GCAGGAACTAGGATATGGTCGATGTATGACGAATTTGCTAAGGTAAAGTG
TTGATATGTATAATTGGGAACCTCACCATGCGTAATGTCAATTGGTAACA
GTTCGTTTTCATTAATAAAGTCTGAAAGGTACTTGGAAAGAACGTTGGGT
TTGCCTGAACGGGATGAGATTGGG Coding sequence (CDS) from alignment at scaffold_191:6805..7978 >TCONS_00051000 ID=TCONS_00051000|Name=TCONS_00051000|organism=Clytia hemisphaerica|type=CDS|length=1173bp|location=Sequence derived from alignment at scaffold_191:6805..7978 (Clytia hemisphaerica)
ATTTAATGATTTCTTATAGGATTTAACGAGTGGAATAAGAATTGAAGTGC
CTAGTTGGCTTGGTAAACGTGATGacgaaaaaagtttgttaagtAGGTCA
GTCAGGTATGACTTGAAAGTAGGGCTTTCCGCACAGAGAAAATGTTCCGC
TTTGATCTGAAAGGGATCTCTAGACTTTCCGAATTTCAAACGACTGAGAG
CATCTGCTACGTCCGATTCAGTGACGTAGAAATCATCTGAGGGATCTTGA
TTTATCTGCTGCAGAAGTTCGTTGAGTTTTAGATTGGATTCTGCGTTGTT
AGTATTAGGAACACGCGGTGTGTTTAACAAGTTATTGAAATGAGAATGGA
ATTCATCTGTAATATCTGACTTGTTGGATTTACCATTTATTGTATAGAGT
TTTTGATCATCATTTCTCAAGGATCTAAGTCTTTTCCAATAGGATTCTGG
TTTAACGTCTTTCAGTTTATCAATATTGATGTAGTGTCTGGCTGTAGCAT
TGGTCTTAGCACGCTTTACATGATAACGAAAGGATTTGCGTGCGAATCTA
TATCGACAATATGAAGTGTCAGTAGGAGATTTAGGGAAACCGTTGTGCTT
CCAGATATTAAACATTGAACGTAGGACCTTGTGGGCTTTTCGGATATCGT
CATTCCACCATGGTTTGGATTGGAAAACATATGCAGTTTCTTTGAAGGAC
TTGCAGGCTTCACTGGCGCATGAACGGAGGGTGGAGTGGAATTCGTCTAA
CGCATCCTCAGAACTAAAATCAAGTTTGTTGATGGCTGTGGCTACGTAAG
ATCGGTAGAGATcaacaaatttgttgtttttccaGAGATGGTTTGGAACA
AAGTCAGATTCAAGGGTGTTGTCGACGACATCCTCGTTTATTGTTGGTGT
GAACGGTGTGTGAAAAATAGCTGATACCGGAAGGTGGTCACTGGTGTTGT
CAGGGTCAGGATCGTGTACCGATACTTTGATGATAGTTTCTATAGAGGAT
GCAGGAACTAGGATATGGTCGATGTATGACGAATTTGCTAAGGTAAAGTG
TTGATATGTATAATTGGGAACCTCACCATGCGTAATGTCAATTGGTAACA
GTTCGTTTTCATTAATAAAGTCTGAAAGGTACTTGGAAAGAACGTTGGGT
TTGCCTGAACGGGATGAGATTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051000-exon-scaffold_191-1491911889:6805..7978 | TCONS_00051000-exon-scaffold_191-1491911889:6805..7978 | Clytia hemisphaerica | exon |
| TCONS_00051000-exon-scaffold_191-1510915933:6805..7978 | TCONS_00051000-exon-scaffold_191-1510915933:6805..7978 | Clytia hemisphaerica | exon |
| TCONS_00051000-exon-scaffold_191-1575043694:6805..7978 | TCONS_00051000-exon-scaffold_191-1575043694:6805..7978 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_191 | supercontig | scaffold_191:6805..7978 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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