TCONS_00050998 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050998
Unique NameTCONS_00050998
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length339

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050998 ID=TCONS_00050998|Name=TCONS_00050998|organism=Clytia hemisphaerica|type=transcript|length=339bp
CTCTTCAATtaacttttttacaaatttacGCAATGATGCAGGCTTTGCTT
TTTTCTTGCATACACACAATACTTACAGTGTGTTTTGAGATATAAGAGCC
TTAGTCCGACCTATTCATAAATCAAACCCCagaaaagcaaataaaagaat
cgATATTCCAGTAGTTTatacaatttctttttaaaaatactgTCATATAG
ATCTTATGGACACATGAGGCACACTGTGGATTCTTAAAAGAGCATGACAG
TAAAGCTTTAGAATCTGAAGACTAGGAAAAATCCTCATCTAGTTACACAG
GTAAAAATCGTTAAATCACATTCATGTGAAAACTGATTT
Run BLAST on NCBI

transcript from alignment at scaffold_190:61809..62147

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050998 ID=TCONS_00050998|Name=TCONS_00050998|organism=Clytia hemisphaerica|type=transcript|length=339bp|location=Sequence derived from alignment at scaffold_190:61809..62147 (Clytia hemisphaerica)
AAATCAGTTTTCACATGAATGTGATTTAACGATTTTTACCTGTGTAACTA
GATGAGGATTTTTCCTAGTCTTCAGATTCTAAAGCTTTACTGTCATGCTC
TTTTAAGAATCCACAGTGTGCCTCATGTGTCCATAAGATCTATATGAcag
tatttttaaaaagaaattgtatAAACTACTGGAATATcgattcttttatt
tgcttttctGGGGTTTGATTTATGAATAGGTCGGACTAAGGCTCTTATAT
CTCAAAACACACTGTAAGTATTGTGTGTATGCAAGAAAAAAGCAAAGCCT
GCATCATTGCgtaaatttgtaaaaaagttaATTGAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032330XLOC_032330Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050998-exon-scaffold_190-1491911889:61809..62147TCONS_00050998-exon-scaffold_190-1491911889:61809..62147Clytia hemisphaericaexon
TCONS_00050998-exon-scaffold_190-1510915933:61809..62147TCONS_00050998-exon-scaffold_190-1510915933:61809..62147Clytia hemisphaericaexon
TCONS_00050998-exon-scaffold_190-1575043694:61809..62147TCONS_00050998-exon-scaffold_190-1575043694:61809..62147Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_190supercontigscaffold_190:61809..62147 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.91226	3.72573	1.54498	2.11613	13.2489	10.7603	22.8059	31.2048	7.58903	11.3942	5.80624	8.7241	14.157	14.1367	16.2712	14.3018	19.6673	17.2186	13.9249	11.8393	16.3592	12.7414	11.2646	12.2325	14.3572	24.5809	28.4396	22.7636	19.0828	23.4543
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050998 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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