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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050993 ID=TCONS_00050993|Name=TCONS_00050993|organism=Clytia hemisphaerica|type=transcript|length=1675bpRun BLAST on NCBI transcript from alignment at scaffold_190:62501..81088+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050993 ID=TCONS_00050993|Name=TCONS_00050993|organism=Clytia hemisphaerica|type=transcript|length=18588bp|location=Sequence derived from alignment at scaffold_190:62501..81088+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00050993 vs. Swiss-Prot (Human)
Match: LC7L2 (Putative RNA-binding protein Luc7-like 2 OS=Homo sapiens GN=LUC7L2 PE=1 SV=2) HSP 1 Score: 248.054 bits (632), Expect = 1.554e-75 Identity = 121/235 (51.49%), Postives = 168/235 (71.49%), Query Frame = 2
Query: 200 FFD*LLGAPGANST-----KFSDPEVCKSYLLGLCPYDLFHNTGSFKSSKKLDLGVCTKVHDPALKADYELAANGKEYEYEFEQFGNISKFVEDCDHKVEANKKRLEETQDQ--EQLAPEALAVHVLNESIGKKLSQAEELGAEGNVEESMKIMADVEELKNQKRKAEEAYRNAVPATQNQQQKLRVCEICAAFLSLYDNDRRLADHFGGRLHMGFIAVRDRLEELKAIVEKKRE 883
D L+G T KFSD VCKS+LL CP+D+ T ++DLG C KVHD AL+ADYE+A+ +++ +E + ++ F+ DCD + E KKRL ETQ++ ++A +A VH LNE IGK L++ E+LGAEGNVEES K+M +VE+ + +KR+AEE YRN++PA+ QQQKLRVCE+C+A+L L+DNDRRLADHFGG+LH+GFI +R++LEELK +V +K+E
Sbjct: 10 MLDQLMGTSRDGDTTRQRIKFSDDRVCKSHLLNCCPHDVLSGT-------RMDLGECLKVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVAKKRLAETQEEISAEVAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAEKQE 237 The following BLAST results are available for this feature:
BLAST of TCONS_00050993 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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