TCONS_00050991 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050991
Unique NameTCONS_00050991
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1669

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050991 ID=TCONS_00050991|Name=TCONS_00050991|organism=Clytia hemisphaerica|type=transcript|length=1669bp
ATTAGAATCAATCTCTAAAATGTACGGAGCCGAAAACGGAGGAGAAGGAA
CGAAATTTTATCGAAACAGATACACCTTGGATTTTTTGTCaatccaaatt
taaaatttacaagCTATCAAACTGGTAGATTCCCCTATCAAAGGGTGACT
CTTCAAAATGAGTGACATGGCAAGGAAGATGCTCGATGAGCTGATGGGAA
CAAATAGAGATGGAGCTCCTGGTGCTAACTcaacaaaattttctgaccca
gAAGTTTGCAAAAGTTACCTTTTAGGACTTTGCCCTTACGATCTTTTCCA
CAATACTgggTCCTTCAAGTCAAGTAAaAAATTGGACCTTGGCGTGTGCA
CAAAGGTTCATGATCCAGCTTTGAAGGCTGATTATGAGTTAGCTGCCAAC
GGCAAAGAATATGAATATGAATTTGAGcaATTTGGCAACATTTCTAAATT
TGTTGAAGATTGTGATCACAAAGTGGAAGCCAACAAAAAACGTCTTGAAG
AAACACAAGACCAGGAGCAACTTGCCCCTGAAGCGCTTGCTGTCCACGTG
TTGAATGAGAGCATTGGAAAGAAATTATCACAAGCAGAAGAATTAGGTGC
TGAAGGAAACGTGGAAGAATCGATGAAAATTATGGCAGATGTAGAGGAGC
TAAAGAATCAAAAACGAAAAGCCGAGGAAGCATATCGTAACGCAGTACCA
GCGACacaaaatcaacaacaaaaattacGTGTTTGTGAAATCTGTGCTGC
TTTCTTGAGCTTGTACGACAATGATCGAAGATTGGCAGATCATTTTGGTG
GACGGTTGCACATGGGTTTCATTGCAGTGCGCGATAGACTGGAGGAATTA
AAGGCAATCGTCGAAAAGAAACGTGAAAGTAGACGTGGCAAGCGTGATAA
AGATCGAACTGATAAAGGCAATGATCGTGGTGATAAAGATCGTGGTGATA
AAGATCGTGGTGATAGAGACCGTGGTGATAGAGATCGTGGTGATAGAGAT
CGTGATCGAAAAGATAGGCGTCGCAGTCGTAGTAAGAGTCGTGAAAGGCG
CCGGGATCGTGACAGAGACAGAGACAGAGACAGAGATAGAGATAGGGATA
GACGCCGTAGCGAACGAAGTGATCGAGATAAAGAAAGAGATCGAGACAGG
AAGCGTCGAAGCAGAAGTCGTAGCCGAGATCGTGACCGAAGGAGAAGTCG
TCGTAGTCGGAGTCGAGAACGTCGAAGGGATCGAGATAGAAGTCGGGATC
GTTCTCGGGATCGAAGAAGGGACCGAAGCCGCGATCGCCGAGACCGAAGC
AAAGAACGAAAAGGATCGGATACGGTCGCAACGGAAGAACGTCAAACGGA
AAACGATATCGAGAATAGGTCGACTGGCAACCCGGATAGTGAAAAAAACG
GTGATACGAATGATAGGGTACCTCAACCACAGGTAGAATCAATGGATCAA
GGAGAAGGAGAAAATTCCACAGACAATCAAACGAGTTACGAGAATGAAAG
CAAACTGAATGATTTGAACGATGAAAAGCCGACGAacgaggaagaagaag
aaacgaTCCGAGCCGAAGACTACTAAACTTTTTGAGTAATGATTTTCAAT
GactattttttttgtaaatatccCAAACACTTTTAGAAAATCGGAAAGAT
Cacaattaatttaattttt
Run BLAST on NCBI

transcript from alignment at scaffold_190:57931..81088+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050991 ID=TCONS_00050991|Name=TCONS_00050991|organism=Clytia hemisphaerica|type=transcript|length=23158bp|location=Sequence derived from alignment at scaffold_190:57931..81088+ (Clytia hemisphaerica)
ATTAGAATCAATCTCTAAAATGTACGGAGCCGAAAACGGAGGAGAAGGAA
CGAAATTTTATCGAAACAGATACACCTTGGATTTTTTGTCaatccaaatt
taaaatttacaagCTATCAAACTGGTAGATTCCCCTATCAAAGGGTGACT
CTTCAAAATGAGTGACATGGCAAGGAAGATGCTCGATGAGCTGATGGGAA
CAAATAGAGATGGTGAGTGTCTttgcttcatttttttaatctaaaacaca
caaagagagacaaaattaaaaaactttagCTTCTTCTTTATACCGTTGAC
AAATATTAATTCTTGTTTCATGTATCAAAATGACAATGGGATTTTTTGCC
AAAGTTGTTCATCAGCCTCCAATTTCCTCCTTTTGCCTATAAAGTGGAAT
CAACGGCTCTCGGGTCGGGTGGTGCGAGGACCCTCCCTGCCGACGCACCT
GACTGtctggtgtatttgtccggtggcaaaaagtatcatttccctacacc
ggacgcaattaGTCCGCTGTCAGTcgggtgttgcatacagggaattttgg
acgccggacatttatgaaacaaaaaattaagaaacacggGACAcacaccg
gactggtcatgtccggtgttttgattgtccggtggaaaaaatatccttct
ccgacaccggacatccgacttccttaagtccggtgtaggtagagattgtc
cggtggtaaaaaaaattctcattttacaccggactttcgcgtgtccggtg
ttcgttaaaNgtagcgactccagaagtcatgcaactttcgttgacgtcaa
accaaatgtttcatttttccgtgaactttgagcCCTTGGAACTtgttttc
tatgtatgctaaagcgttccggtttttactaaatgaaaaagcccgtgatc
ttagctttccagcggtatataacactgtggacacgggctagacggcaaat
tggtaaaatgccgaacgttttgcaacattttgaaaattctctgccgacgg
gagaaaaaaaattagcaactatcgaagaacaaatgtgtctggaaacggag
gaaaatgtattgggaggctgaaactttgtatgtttatcagaaaaagggtg
aggaattcaaaaatcacaattgctaattctagttctttcattttcatgta
gtttttttaacttttttgNcaaagctctacaagataggatagattttgaa
aaaaaattaaaacttgaaaaatcttctggagttgctagtgtagagattgt
ccggtgttaaaaaaaattctcattttacaccggactttcgcgtgtccggt
atgcgttaagtccggtgcgtcggcagggtcctgtggTGCGCGGTTGGCAA
ACAATATCATACTCCTCCATCCAGaggatgcatcgtctcttattttcccc
ctattttatactttcctatcttctatcctgattttctgtctttctcaagt
gtttctaacttaCGCCAACGAGACACGACAGAAAGTTGTCATTCACAAAT
Nagtttatttctgccgaaatggattttcttttcatttggggtttctcctt
tcagaaaaacttatcctttactcataagtttttgttcctccatttccaga
ggccccttgaaaatgggccctaccaccttttttgacccatttcaaccttt
tccaagctattttcttcaaaaactaaaataaaacaatgcaatgtcttctt
ttttcaaaaaaagatatatctttcgttattttgataaatatactaaatat
ttttatataataatattttaacaccatNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNcaaccctaaccctaaccctaactgataataaccaaaccc
ccgtctaggtccgcggattgaaaaatttcacttgcatcctggagtatgat
atcgtttgccaaacCCTCAGGTGCCACGCCACCATCACCAGCAGTTCGGA
ATCGGGTGCTGCACCAGTAGTCGTTGTTTTGTCGGGTGCTGACTTttcta
aatttgcgaaaacaCCAGACAATTAGAGCACCTGACAGTTGGTTACTAGA
TGGAAGAAACTAAGttttcttgaaaattcaaaaatttgtgaGGGTCTGTG
TTTCTGGAAAATTTGAGGAGGATctgtgttttttcaaaaatttaaaaggg
GTCAGGGTTTTCGTAAAGGTTTGGGGTCTAGGCTTTCTTAGGATCCAGGG
TCCAGTCCGGGTCCTGGTTGTATAGTACgtcaataaaaagaaagaaaaac
tttaatctctGAAGTTCTCTCAAGAACATCAAAAAATCCAAGAATCAGAA
AAACACCTTGTTTGAAAAGAGagtaattttatcaaaaacgcGCTGGCTCA
CTACAAGTGGGCGGTAGAAAGAAGAAACCGTTTTACCGCCCTCGAGAAAT
CGCCCCCCACCCCTGTTACATGTCGAGTGCTGTTAGAGCTCTCAAGATAT
AGCACCCAACAAAGTGCACCCCCGACTAACGAGTGCACCTGCAGGACGTA
GTGGAAAACGTAAGGTATGAAGGCTGATGGGGGAATGTTCCTTCCTTACT
AGTAAATTTAGGATCCTCagatagaaaaatcaaaattttttcctgatttC
ACCATGAAAAGTggccaaaatgactaaaagtagacgaaaaattggaaaat
tttctaaatttcatcctgaaaatatatcataaattGTAATTAAAAAGTTG
GCTCTGTCAGATACACCTTGTCTTAAAAATTATGTATATATATAACCGGT
TTTAATCATTTTCCTAATTAAGGTAATAACGTTTTGGGATTCTAAATGTA
CCTTGTGGCTGTAACCCTGTCTgtgttgaatttttcttttgttattttga
tacatTAGAAAGCATTGAATAATAGTTTCAAAATCAGTGATGTTgcaaat
taaagtctgtccagatataattggcagtggaaacaagaatgcctgtaact
tttgatagtcaaatacaattatggaaaatttttttNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNaaaaaaatttccataattatatttgactatcaaaagttacaggcatt
cttgtttccactgccaattatatttggacagactttagtagtgaaaattt
gttttatattaagcctattttcactttctttgaTTTATGTCCAGACAAAT
CTTTGGCCTCCTCATATGAGGTTGAGCATCTTGTTAgtgatttctttaaa
aaatattttcagccaaaattacTGTAAGTATTCATCGGTAAGAatgaatt
tattatttatttttatatatattgaTTTGAAACATTGTTAATATATAATG
CAGGAAAAAATCGTTAAAACACACTCGTGTGAAAACTGATTTCCAAGGGT
GGGATTTGGTGCGTGAATCAATTATCAACTAAATTATCAATCTGCAGTCA
CAATTTGACTTAATTCTTCTTAACTTTGAGTGTTGTAATCTGATACTCAA
TTCAATATGGTGTAAACACTAAGTGTGTTATTTACAATTTCACACCCATG
TCAAACACGAACCAAATCCCACCCTGGGAAATCAGTTTTCACATGAATGT
GATTTAACGATTTTTACCTGTGTAACTAGATGAGGATTTTTCCTAGTCTT
CAGATTCTAAAGCTTTACTGTCATGCTCTTTTAAGAATCCACAGTGTGCC
TCATGTGTCCATAAGATCTATATGAcagtatttttaaaaagaaattgtat
AAACTACTGGAATATcgattcttttatttgcttttctGGGGTTTGATTTA
TGAATAGGTCGGACTAAGGCTCTTATATCTCAAAACACACTGTAAGTATT
GTGTGTATGCAAGAAAAAAGCAAAGCCTGCATCATTGCgtaaatttgtaa
aaaagttaATTGAAGAGGTACAAGGTGGTTTGGTGAGTTCAACTTATTTA
TTTAGTGTTTTTTTGTCTTCTTACTAACACGAAAGAATTACTGTAAAGTA
TAGGGGACTGTCTGAAAGTTTTAAGAGAAACTTTCTTTACCAGGAAACAT
ATTTCATGAATTTCATATACTTTCAGATATAAATACTCATGCTAGCAGAA
ACCTTTTTGTGAGAAAAACTTTGCTTTGATAAATGTCTCAGTTAATAATA
GATTTTAAAGacatttgattttgataattttaatatGCAAAAATCATTTA
GCAATAAAGATTTCGATTTCATATTTCCTGGAAAAGAGATTCTCTTCTGA
CTTCCTGAAATTTGCGGCATGTGAAATTCAAAAGTACTTTAGCTCATTGA
ACCCCTATTATTTATTGCATTTAAAAATTGCGTtcttaaacttaaaaaat
caGCCACATTTTGTGACCCTCCAAGCGATAACAAAGACACAAAATTGTTG
CCGGCAACCAAGgcaacaaaaagttttttgaatttcacaAGCCACTTTCT
TATCAAATTCTAATACTTATTTTTTGATTGACTTTTAGGAGCTCCTGGTG
CTAACTcaacaaaattttctgacccagAAGTTTGCAAAAGTTACCTTTTA
GGACTTTGCCCTTACGATCTTTTCCACAATACTGTAAGTTTTTCTTGAAT
TCACAATGTCTCTGTGTCTGTCACAATATTTATTCACTTTTATAAGAATT
CAGATTTTAAGGACCTCCCCATGATTTATTACTTTCTAAACGGCCATTCA
TTCCAAGTAATTATCAAACACAATTGCAGATAGTCTATGCCCAATTGAAC
CACCTCTTTAGGTGTTATCAAATGGTCCATGGGTCACGGCACTCCTTTGC
CTCTACTGGCAATATTCAGACAAAAACAAGCGTGACATATCGTACCCCTT
CCTCTGGAATGGTTGTAGTAAAAACAAGGTTTATCATAGAGGATACTTTC
AGGCTTTAGAAGTGTTTTCATTTTACTTCGAGTACTTTTACTGAGCAATA
CCCCACTCTGATATCTTATGGTATTTTTCGTGGTCATAATAATAATACTc
atctttaaaataaaagaaaattaactttatttctcatttccaaaaaagaa
ttgaaattgataatcgctctgaaatatttcaatctccccagttcaatttt
attttttatttttttaggggTCCTTCAAGTCAAGTAAagtaagtttttct
tttcatattctttcaattttgcaaTGTCAGTATCACTTGTTAATGCTCCC
GTTAAAGGCAGAATAAGATGGGCCCTCCTTAACAAAAAGCTCATGAAACA
ATAAATGACAGAAAGAAGAATATTTAGTGTAGAATGCGTGATAATTTCTG
CACTTTTTATGCTAAACAACGCTTCTTTGTTTGTAAAAAACATAATTTAG
GCTCAATATTTGTTGTGGGTCATAACAAGCTCCCAACCACACATTGTTGT
TGACAATTTACCTCTGCACGTGTTAACCCTATTTAGCCTCAAGCTTTTTT
Gaatttgtatccccaggggggggggtagaatctaccactctcgattattt
tttatctagaagGGCTATggacatgaaatttggtacagatgctCTCTATG
ATGACACATATTctggaataaaaaaaattcgatgatgtcattcaaaaatt
gatgaagtcatctcaaaatttccacctgggaaaaagccaaaatatatggt
ttacaaaaaatgtctattacagtcgaaccaagatatttagattctgtttg
aagattctaaAAGATAAAAGGTTGCTCTTTAAAATAGTTTGCCGGTTTTG
TATTTTGTATGAAGATTTTATCTTGAAATCTGTGCTGAAGATgagtgaaa
ttttcaaaatttgatgacgtcataaatgatgacgttataattttcaaatg
ttcttgtttaatttttcaaatttagattgTCAatacctatcacgtgtcaa
aatttgaagatgattgaataaatagttcagaagttatcagcactttttta
aattttgaattttaagcgattttagctgggttttaggTCATGTTTAACGA
TAAAGtaataaaacctgatctggacaacctgtGACCCTAGAATTCTGCAC
AAATACTgttaataagattttgttaaaagtcagaaagtttcgagtcgttt
aaaaattttttctccgagatatacacaaaagaattccagcgtggtagatt
ctaaccccccccccctggggctaatagggttaagttaGAAGaaacgataa
actcggtatgTACAGGGTTAAGTTAATTTATgagaaaatttcattaaatg
aaTAAAACTTAACATACCACTTCTTCACTTCAATTTATATAATTCTTTTA
GAAATTGGACCTTGGCGTGTGCACAAAGGTTCATGATCCAGCTTTGAAGG
CTGATTATGAGTTAGCTGCCAACGGCAAAGAATATGAATATGAATTTGAG
GTATTTATTCTTGGTTTCAGATATTTTCAACTTCAGGTGGAGCAAgcctc
gaaataacgatttcgTTCGTCGGTCagacaaaatgtccgatcaaggttgc
tttagcttgataATTATGATTTTCTGGTCGGACAATATTCAATAtccgac
cgttatttcaagCCCTGACTCTCAGATTTAGTTGATCAAACTTAGCTTAT
CAATATTACATTTGGGCCTACAAATGGTGCAAATGATAATTAAGATGAGC
CCACAATGATTTCGATAGGAGTATTATATGGGAGATTGGCCAGGGTTGGC
AATTACGAAACAGGTATTGCTAGGTAAGTTTTTCGAAGCCTTCTCTATTA
aaacccctctagaaactaccTAGCTTTTGATGTCACACTTTAAATAGAGA
ACATGGTTTGTCTTAAATACAACCATTGTATCCATAAATAAGCCCACTTA
GGTCAAGTTTCAAGTCAACAGAGCTCTAAAATAATTCTatgccaaaatat
tttttcagcaATTTGGCAACATTTCTAAATTTGTTGAAGATTGTGATCAC
AAAGTGGAAGCCAACAAAAAACGTCTTGAAGAAACACAAGACCAGGAGCA
ACTTGCCCCTGAAGCGCTTGCTGTCCACGTGTTGAATGAGAGCATTGGAA
AGAAATTATCACAAGCAGAAGAATTAGGTAAATACAGCATTTTCCTGTAG
ATAAATCCATCCAAttgtattttgttattttttcctATCAATCCCATGGT
TAATGTATCGATATTGAGGCATTTTAGATTTCCTACTCCACGAAAGTCCC
TCTTTTTATGATTTAAAAACTGGAATTGTTTTTTACAGCAATGTATAGAA
ATTCACTCTgtcgatttttcattttatcagaaaaaaagattttttttcat
tttttttctaattttttcagGTGCTGAAGGAAACGTGGAAGAATCGATGA
AAATTATGGCAGATGTAGAGGAGCTAAAGAATCAAAAACGAAAAGCCGAG
GTCAGTATATAATAAtatctaccttatcggggaaaatttttgtcggggaa
aaatattcgtcacttgctggtagttggtaaacgcattaaggccggggaaa
agtttcgtcggggaaaaatattcgtcatttggccaaaatttcgtcactct
tccccgacgaagttttccccgataaggtatgttcTTCTTAAGTTTAGTAA
GGATTATAAGCCACAATTTTTAGACAAAGTTTTCTAGCAGTTTCATAATT
TTCGCACAGACATTTGAAAATGGCTGCAATAAACTGGCGTTTAAAAACCA
CTCTTTCCTTGCTTTgggtttttcaaaatccaagaCCCCCTTGATGTATG
TTACTAATCAATCTCATCATTCTCTGACTCCAGGAAGCATATCGTAACGC
AGTACCAGCGACacaaaatcaacaacaaaaattacGTGTTTGTGAAATCT
GTGCTGCTTTCTTGAGCTTGTACGACAATGATCGAAGATTGGCAGATCAT
TTTGGTGGACGGTTGCACATGGGTTTCATTGCAGTGCGCGATAGACTGGA
GGAATTAAAGGTCAGATTTGTTTGTTTTATATCAAGATTAAAACACTCTG
TGTAATGGTACGATCGTGCAAAAACACAAACTTCCGAACATTGTCCATTC
CTCTCAATTTTCTGAAATTCAATTCTCTCTTTCACTTCAGGCAATCGTCG
AAAAGAAACGTGAAAGTAGACGTGGCAAGCGTGATAAAGATCGAACTGAT
AAAGGCAATGATCGTGGTGATAAAGATCGTGGTGATAAAGATCGTGGTGA
TAGAGACCGTGGTGATAGAGATCGTGGTGATAGAGATCGTGATCGAAAAG
ATAGGCGTCGCAGTCGTAGTAAGAGTCGTGAAAGGCGCCGGGATCGTGAC
AGAGACAGAGACAGAGACAGAGATAGAGATAGGGATAGACGCCGTAGCGA
ACGAAGTGATCGAGATAAAGAAAGAGATCGAGACAGGTATTGAATTGTTA
AACTTTGAAAGGGGATAGTCAGAAAGTTTACATCTTACGCCTGCACCACT
TAAAAAGAACGCCCACGGGCGTCCCTTACGCCTTTAGATTCTTTCGTTTC
TTCGTCCTGAAAATACCACAGACTTTATACGGTTAACTCTCGCtcattcg
aactcgaacgggaagTCTGATTTGTCCCAAtcacagagagattcgaatta
tagagagtatttcTGTTTGAAGGTAACTGATTTGAATTGTGAAAGAATCA
GTActgtaattcatgatatgcaccattgcaatgtcttctgcggacccaac
agctgattggttgaaagtgacgtattgactgattttacttcACTtacaat
cagctattgggtccgtgatgtaatgtcagaagacattgcagtggtgcata
tcatgaatagaagtTTGGATTAGCGAGAGTCCGCTTCAATTTCTAGAcac
tcaattttcaattttatgagGAAGCAATAACAACCATGTAGAAATTCATT
TTCAGAGAATTAAAATCATCATATTTCAACTACAGAAAACATTTGGAACC
AACTATAGAAGTTGTCTATAaacaggaatttaatttgaaaatttatggcA
TACCTGATAGTCCATAGTATAACCCAACGTGATAGTTTTGGGAAAAAAGT
TTAGTGCTTTTTATcgtgttttgttttcaactggtaaTCAAACGAACATT
GCTTCTCTTATCGTTTAGGAAGCGTCGAAGCAGAAGTCGTAGCCGAGATC
GTGACCGAAGGAGAAGTCGTCGTAGTCGGAGTCGAGAACGTCGAAGGGAT
CGAGATAGAAGTCGGGATCGTTCTCGGGATCGAAGAAGGGACCGAAGCCG
CGATCGCCGAGACCGAAGCAAAGAACGAAAAGGATCGGATACGGTCGCAA
CGGAAGAACGTCAAACGGAAAACGATATCGAGAATAGGTCGACTGGCAAC
CCGGATAGTGAAAAAAACGGTGATACGAATGATAGGGTACCTCAACCACA
GGTAGAATCAATGGATCAAGGAGAAGGAGAAAATTCCACAGACAATCAAA
CGAGTTACGAGAATGAAAGCAAACTGAATGATTTGAACGGTAAGAATTCT
CCGATTTCAGTAATACAACATgggttttgttttatttttaatacgCTAGA
ACTCTAGATTCTAGACTGATGAATTCTGATAAAGTCCAGTGAATATGTAC
TTGAGGTGAACGTGAATATGTAATTGAGATGGCATATCGGATTTTTAGAC
CGGCGAATCTTAATTATGCTTAGACTGTTGAAATTTGCTACAAATCTGCt
acaaatatttctttataagcaaccaggttgtTTGAGGCTTAATTCCCAAA
ATCAGCCAAAGATATGTTTTATGGGCAAACGACTAATAACAAACAACCCA
GTAAGCATAAAATGGTATAATATTAGGTGTATTCATACTctatagaaaaa
ttttcagaaactgAACGATAACATGGTATTATTATAAATTGATCCACTAC
CAGTACTGCTCTTCTAAAAAATCTTGTATTAATTGTAGGGGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACT
TGGACatttaaatagatacatcattgaatatgCCTTTCATCTCTTTGTCC
TTCAAAGTTTTTCGGTAGGTGTCGTCGTCAAACTAAGTTCATATCGAAAA
CGTTGAGTTTGAGAATCAAGTCTTTGGTTTCACCTAACTCAAGCTGTCTT
AGTTGAGAAGAATGACATTAAAGAGTAAAAATTGTCATCAGTCAATCCAA
CATTTCCCAATTAAAGCAGTTTTCATAGTCAAAACACTGGCTGGCTCCaa
aatttgtatgtttttaaaaatatcacttttttGGCTACCATCTTTGATAT
TAGGAAATCCCGCGaaaaaaaggcggtattgacttagacgcccgaaaagg
gcgtaaaaagatctTTCGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAAATGCTacggcc
ttaaaattttcagggtGTGTTCAGAAAGGGTATAGGGTCATGAAACGCGC
AAAATCCCGAAATCGATAATTTTTCCACCAAATCTCAAagcttcatgtga
ctcccaccttaataaaaattcaaattctctCGGGGTTGCGTTTTTCTCAT
GATCGTAATTTCGTTGCATTTGTAAACaggcagagtatgtttttattgtt
acgtaatgaaaaagaaaaaagagggagagcttaaaatacaattttgtgaa
tacacacttaaaactttctactcaatcgcatgttcaaactcgatactttt
attagggacaccctgtattcgATTTGAGTAATTAATTATTGAAAAGCcaa
ttaatttaattaattaattcatccactaattaatgaaaaacccgaaaaat
taatttctttgttAAGTCTGTTAAGTAAAATCAAACTAAATATGGCAGCA
TGACATGAATGTAGGACCAGCTAGACCGGAATCCCGTCTATCGCTTCACT
GCGGAAATCTCGAAAAAACTCGAATTCCTTGTTCTCTTTTGGATGTtgta
ggaaaaaagaaaaaggttagaCAGTGTTTCCTGGCTAAGGACCAGCACAC
TCCTCATTAGAAATACTACCATCACAGTCTAGCGTTTTATTCGTTTATTA
CCGTTCAtatataaatattttgtttcgtAAATATCGAAGTAGAACCATTT
ATCGCGATGAAAAAATTCGTTTTTGAATAACCAGTCANGTTCAtatataa
atattttgtttcgtAAATATCGAAGTAGAACCATTTATCGCGATGAAAAA
ATTCGTTTTTGAATAACCAGTCAAGTTGGTAAATTCGTCTTTTCCAACGT
GGATTTTGTACATGTGATGACAGAAACCACGCCAAAGATAACATTGGTTG
GGCATCCATTTCCtggaaataaagcaaatatatattattcaattgaattg
aattgcaTTTTAATTGATTTAAGAGTTAGCCTATACATANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTTTTTACGCCACACgcccagatctagagaaagga
tgctacactccctattcgggcgcttcgcgccctcaaaacggtcgttccgc
aaaaaatttaatgacaaaCAAATGCCGTATAttaaagtaagatgaaaaca
ctaaagACTCTCAGgggatcttgaatttaaaaagagttgTCGCAAtcgca
ataaacagactgtacccttataaNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGTATAttaaagtaagatgaaaacactaaagACTCTCAGgggatcttga
atttaaaaagagttgTCGCAAtcgcaataaacagactgtacccttataat
cataaaagttggtgagtccagtcaaaacacagatttgatctgtagcgtcg
tgcttcaccttacacctttactttacaaaatggagaaaattttacaataa
accaagaaaaatgtcaaaatttctgagagaTGGATTTTTTTTGGCATATA
TACTATCATGTGTAgctaaaaatactgaaaaaaggaagaaaagtatAGTA
CAGACCTATTCGCAATGTCATgttgaatgaataaaaaactcaaGCATACT
TCAGTATCAAACAATGAGATGATAATATTTAGAATCCACTTTACAGTAAc
taattatatattatatattattgagttattgttttaatgttagaatttta
attgttcaatatgaaatcgtaaatagcaaaaggtctatttccaaaattta
tttattgttctacaggAAGGCCTTCCGAAGAATAAGGGTCAGTCCTGGTC
AGCAAGTCAGTACATatataataaaatcaaatctcAGAAGgtcaagattt
taaaaatttgtgacattttgaagcaccagactttttcctctttattgatA
ATGCTTTGTGTCATTTccattgtgatattttgaattcatcaagttttggg
atgaatttacaaatacattaattttcaacttgttcagtggcaaattcaat
attattattttttctattttgaaaaattagggtcggtcaggcctgtagaa
caacaaattaatttggtctcatttaatgccaaaaagaaaaaaactttcgc
gccagagaaataatttcatttttccaaaagaatgcaaaaaaggaatattc
atgacaaaagtatcAAACCACACTTTagacgcatgcaaaggaaagttcat
aattcacgacaaaagttttccaagttttaattGCACGTTGAAAGAGATCT
CCAAATTCATGACTAAAGTATTCCATATTTTGAGCgcaaattgaagaaaa
tctttaagttcataacaaaagtattccacattttaaacgcatgtgaaaga
aaagttaatagttcataacaaaagttttccccattttaaacgcatgcgaa
ggagaagttcatagttcacaacaaaagttttccccattttaaacgcatgg
aaatgaaaagttcatagttcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNTAGGGAAGCTTTAGACCGAAGAAAATTGGTAATTATAC
TACTGTAAACATCAGTTGATTGGTTAAATGCATTAAATAAGtaatttatt
ataattatatttgttatttttttgtttttttatgaggGATTTCAGGCGGG
AGATGAcgggattttgagggatctttttaatttattcgAAATTCGAAAAG
CCGAGATTAAAAATGGTAGCTGAAACAAGCTCCGCGGAAAAGGCGGGATG
TTCAGTTTGTTTAGTTTTCTGGTCTTGTTGATTGATAATGGTGACTACTT
GTGACTTTGTGTTGGTTGTTGAAGATTTCTTAGGTTTATCAGTCATTTTT
CCTGTCATATTCTTTATTTGATGATTGATTGGTAATTTTGTTAAAGTGCA
GTATCATTTTTTACAGGTAAAAATACTTATGGAGTCTAAAAAAGAAGATa
cagtaaaaaagtttttaaaagataaaGATGCTAAAGTAGCATGGCTTTCC
TTGCTTGATTTTGGACAACCAACAACCGATCCTTGCTGGTATCTTAAAAG
CACTCGTTTAAACGAAGGCTACAAGGCAGAAAGAATAGTCAAAGATAAGA
ATGAAGACGTTTTTAGAGTTGTTATCAGTATCGAAACATCATTTCTTGGT
GTACCATTATTTATCACCAACGCTTTCAAAGGTGTAAAAACATCAGAGGG
ATCAGTCATTTTTTATATGGTTCAGCATTTTACACCACAACTAAGCTCTA
CTAGGATAACAACTCTCACACATgacattttcaataaacttgaaNTGCCA
ACGCTTTCAAAGGTGTAAAAACATCAGAGGGATCAGTCATTTTTAATATG
GTTCAGCATTTCACACCGCAACTAAGCTCTACTAGGATAACAACTCTCAC
ACATgacattttcaataaacttgaaattttgacaaaaaaaaattggccaa
actttacaaaaatagTGTCACTGTCACTGTCAACACCATTGTTTGAGTGT
AGCGCAGAAAATCACGTAGCTAGAACAAACAATATCACCACATATATGAG
AGAAATTTTTCAATGTATTGGTTTTACACCCAAACATCACTGGACCGGGA
ATgaattctttggtttttattggCAGGAGGTTTTGAAATTACTTTCCAAT
AAACTTTTGTAAGCAATCGTTGAAAAGAGCGCATGATCAAGTTTTAATGG
ATATTCAGCAGGTTCGATCACGGAATGCAGGTCCAACAAATGAATTAAAA
TCCAAACAAGCCATCAACAACAGAAATGCCAAAATTAATGCGGTGGTCAC
TTATGCAAGCTTCAATGATATAAAAAGTAGGATTATTGTTTTTATAGTAT
GGNAACAGAAATGCCAAAATTAATGCGGTGGTCACTTATGCAAGCTTCAA
TGATATAAAAAGTAGGATTATTCTTTTTATAGTATGGGCCATTCAAAAAG
TGCGTACGCTCtgagggggagggggtccttTGAAAAGCGTACGTTGGAAG
GAGGTTTATCAAGAATATGTATGTACGCTTtgctttgcaaatttttttca
aactgtttttccaatttttttgaacTTCTATTCGacatataattttttgt
ttatttgctCTCCTATCATGATTTTTAGAGAGGTAAAACCATTTACacac
attttttatgtttcaggcTATGTAACATATCTTCTTGACAACCATGCTGA
TTTAGTTGAGGAAAGCATTGCTGAAAATGAAACCTTTTCAAAGCGCGTta
caaaaatgattaaaaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNccatctactgcgaaaaaaatttcaaaatgttt
tttcttcgccgaaactaagctcttcaaagttgaaatactcttcctcgcaa
aagtcttcactttcttcttcatcaatttttttcaatgcaatttttgaatt
tttagattcaggaatagtttgtctaacagaaaatgtataacatgccatag
ttttgttggttacatcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCCGCCAATtgtcgcgcgggcatttttttgtccgtt
ttaccaccctaaaaccgtcctagAAAAGCCTCATCCTCGTGCTTAaatac
aatagaaaaaagtgtaaaaaatgtttggatcgagtttagggtggtaaatt
aaataataaagtggctacggtcgaaaaggtgtatggGGGATTGGGGGAAA
GTTTGGTGAGAAGGATTTTTTcattcttgattttctttatttttcttttg
tatttccaGATGAAAAGCCGACGAacgaggaagaagaagaaacgaTCCGA
GCCGAAGACTACTAAACTTTTTGAGTAATGATTTTCAATGactatttttt
ttgtaaatatccCAAACACTTTTAGAAAATCGGAAAGATCacaattaatt
taattttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032326XLOC_032326Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050991-exon-scaffold_190-1491911889:57931..58142TCONS_00050991-exon-scaffold_190-1491911889:57931..58142Clytia hemisphaericaexon
TCONS_00050991-exon-scaffold_190-1510915933:57931..58142TCONS_00050991-exon-scaffold_190-1510915933:57931..58142Clytia hemisphaericaexon
TCONS_00050991-exon-scaffold_190-1575043694:57931..58142TCONS_00050991-exon-scaffold_190-1575043694:57931..58142Clytia hemisphaericaexon
TCONS_00050991-exon-scaffold_190-1491911889:62719..62813TCONS_00050991-exon-scaffold_190-1491911889:62719..62813Clytia hemisphaericaexon
TCONS_00050991-exon-scaffold_190-1510915933:62719..62813TCONS_00050991-exon-scaffold_190-1510915933:62719..62813Clytia hemisphaericaexon
TCONS_00050991-exon-scaffold_190-1575043694:62719..62813TCONS_00050991-exon-scaffold_190-1575043694:62719..62813Clytia hemisphaericaexon
TCONS_00050991-exon-scaffold_190-1491911889:63348..63368TCONS_00050991-exon-scaffold_190-1491911889:63348..63368Clytia hemisphaericaexon
TCONS_00050991-exon-scaffold_190-1510915933:63348..63368TCONS_00050991-exon-scaffold_190-1510915933:63348..63368Clytia hemisphaericaexon
TCONS_00050991-exon-scaffold_190-1575043694:63348..63368TCONS_00050991-exon-scaffold_190-1575043694:63348..63368Clytia hemisphaericaexon
TCONS_00050991-exon-scaffold_190-1491911889:64532..64630TCONS_00050991-exon-scaffold_190-1491911889:64532..64630Clytia hemisphaericaexon
TCONS_00050991-exon-scaffold_190-1510915933:64532..64630TCONS_00050991-exon-scaffold_190-1510915933:64532..64630Clytia hemisphaericaexon
TCONS_00050991-exon-scaffold_190-1575043694:64532..64630TCONS_00050991-exon-scaffold_190-1575043694:64532..64630Clytia hemisphaericaexon
TCONS_00050991-exon-scaffold_190-1491911889:65139..65307TCONS_00050991-exon-scaffold_190-1491911889:65139..65307Clytia hemisphaericaexon
TCONS_00050991-exon-scaffold_190-1510915933:65139..65307TCONS_00050991-exon-scaffold_190-1510915933:65139..65307Clytia hemisphaericaexon
TCONS_00050991-exon-scaffold_190-1575043694:65139..65307TCONS_00050991-exon-scaffold_190-1575043694:65139..65307Clytia hemisphaericaexon
TCONS_00050991-exon-scaffold_190-1491911889:65551..65630TCONS_00050991-exon-scaffold_190-1491911889:65551..65630Clytia hemisphaericaexon
TCONS_00050991-exon-scaffold_190-1510915933:65551..65630TCONS_00050991-exon-scaffold_190-1510915933:65551..65630Clytia hemisphaericaexon
TCONS_00050991-exon-scaffold_190-1575043694:65551..65630TCONS_00050991-exon-scaffold_190-1575043694:65551..65630Clytia hemisphaericaexon
TCONS_00050991-exon-scaffold_190-1491911889:66014..66190TCONS_00050991-exon-scaffold_190-1491911889:66014..66190Clytia hemisphaericaexon
TCONS_00050991-exon-scaffold_190-1510915933:66014..66190TCONS_00050991-exon-scaffold_190-1510915933:66014..66190Clytia hemisphaericaexon
TCONS_00050991-exon-scaffold_190-1575043694:66014..66190TCONS_00050991-exon-scaffold_190-1575043694:66014..66190Clytia hemisphaericaexon
TCONS_00050991-exon-scaffold_190-1491911889:66321..66616TCONS_00050991-exon-scaffold_190-1491911889:66321..66616Clytia hemisphaericaexon
TCONS_00050991-exon-scaffold_190-1510915933:66321..66616TCONS_00050991-exon-scaffold_190-1510915933:66321..66616Clytia hemisphaericaexon
TCONS_00050991-exon-scaffold_190-1575043694:66321..66616TCONS_00050991-exon-scaffold_190-1575043694:66321..66616Clytia hemisphaericaexon
TCONS_00050991-exon-scaffold_190-1491911889:67349..67719TCONS_00050991-exon-scaffold_190-1491911889:67349..67719Clytia hemisphaericaexon
TCONS_00050991-exon-scaffold_190-1510915933:67349..67719TCONS_00050991-exon-scaffold_190-1510915933:67349..67719Clytia hemisphaericaexon
TCONS_00050991-exon-scaffold_190-1575043694:67349..67719TCONS_00050991-exon-scaffold_190-1575043694:67349..67719Clytia hemisphaericaexon
TCONS_00050991-exon-scaffold_190-1491911889:80940..81088TCONS_00050991-exon-scaffold_190-1491911889:80940..81088Clytia hemisphaericaexon
TCONS_00050991-exon-scaffold_190-1510915933:80940..81088TCONS_00050991-exon-scaffold_190-1510915933:80940..81088Clytia hemisphaericaexon
TCONS_00050991-exon-scaffold_190-1575043694:80940..81088TCONS_00050991-exon-scaffold_190-1575043694:80940..81088Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_190supercontigscaffold_190:57931..81088 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
72.1731	56.912	73.4954	74.7334	92.6485	71.131	86.2771	97.2129	66.2614	65.0401	69.4954	50.1958	33.9518	35.7007	26.3272	26.0376	53.6299	45.3157	18.061	25.754	36.4009	33.5836	17.3051	21.9788	55.6606	43.2331	29.1424	29.5033	16.4203	13.5117
Blast
[Close]
BLAST of TCONS_00050991 vs. Swiss-Prot (Human)
Match: LC7L2 (Putative RNA-binding protein Luc7-like 2 OS=Homo sapiens GN=LUC7L2 PE=1 SV=2)

HSP 1 Score: 269.626 bits (688), Expect = 8.405e-84
Identity = 128/237 (54.01%), Postives = 176/237 (74.26%), Query Frame = 2 
Query:  173 RKMLDELMGTNRDGAPGANSTKFSDPEVCKSYLLGLCPYDLFHNTGSFKSSKKLDLGVCTKVHDPALKADYELAANGKEYEYEFEQFGNISKFVEDCDHKVEANKKRLEETQDQ--EQLAPEALAVHVLNESIGKKLSQAEELGAEGNVEESMKIMADVEELKNQKRKAEEAYRNAVPATQNQQQKLRVCEICAAFLSLYDNDRRLADHFGGRLHMGFIAVRDRLEELKAIVEKKRE 877
            R MLD+LMGT+RDG       KFSD  VCKS+LL  CP+D+   T       ++DLG C KVHD AL+ADYE+A+  +++ +E +   ++  F+ DCD + E  KKRL ETQ++   ++A +A  VH LNE IGK L++ E+LGAEGNVEES K+M +VE+ + +KR+AEE YRN++PA+  QQQKLRVCE+C+A+L L+DNDRRLADHFGG+LH+GFI +R++LEELK +V +K+E
Sbjct:    8 RAMLDQLMGTSRDGDTTRQRIKFSDDRVCKSHLLNCCPHDVLSGT-------RMDLGECLKVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVAKKRLAETQEEISAEVAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAEKQE 237
The following BLAST results are available for this feature:
BLAST of TCONS_00050991 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LC7L28.405e-8454.01Putative RNA-binding protein Luc7-like 2 OS=Homo s... [more]
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